Wall clock time and date at job start Mon Mar 30 2020 03:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46853 * 111.00100 * 2 1 4 4 C 1.53039 * 109.62709 * 186.21287 * 3 2 1 5 5 C 1.53227 * 109.20388 * 300.37988 * 4 3 2 6 6 C 1.52560 * 109.19451 * 56.81146 * 5 4 3 7 7 C 1.53988 * 110.12681 * 181.65578 * 6 5 4 8 8 C 1.54614 * 103.92813 * 217.72355 * 7 6 5 9 9 C 1.54506 * 104.06056 * 359.67578 * 8 7 6 10 10 H 1.08992 * 110.35787 * 264.96084 * 9 8 7 11 11 C 1.50704 * 110.35492 * 142.66546 * 9 8 7 12 12 H 1.07997 * 119.99989 * 359.97438 * 11 9 8 13 13 C 1.37884 * 119.99758 * 180.02562 * 11 9 8 14 14 N 1.31518 * 119.99777 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99883 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47264 * 89.99723 * 15 13 11 17 17 H 1.48494 * 109.46987 * 209.99836 * 15 13 11 18 18 H 1.48503 * 109.46882 * 329.99885 * 15 13 11 19 19 O 1.43885 * 110.17911 * 65.76539 * 6 5 4 20 20 C 1.46956 * 111.00119 * 124.13749 * 2 1 3 21 21 H 1.08999 * 109.47339 * 295.86042 * 1 2 3 22 22 H 1.08995 * 109.46751 * 55.86084 * 1 2 3 23 23 H 1.08997 * 109.46858 * 175.86313 * 1 2 3 24 24 H 1.08996 * 109.44578 * 306.26598 * 3 2 1 25 25 H 1.09005 * 109.44236 * 66.17027 * 3 2 1 26 26 H 1.09004 * 109.52103 * 180.46300 * 4 3 2 27 27 H 1.08999 * 109.56397 * 60.32859 * 4 3 2 28 28 H 1.09001 * 109.51542 * 296.89609 * 5 4 3 29 29 H 1.09007 * 109.56307 * 176.75726 * 5 4 3 30 30 H 1.08994 * 110.53976 * 336.34169 * 7 6 5 31 31 H 1.09000 * 110.53278 * 99.11680 * 7 6 5 32 32 H 1.09005 * 110.50871 * 118.32060 * 8 7 6 33 33 H 1.09000 * 110.51074 * 240.88882 * 8 7 6 34 34 H 0.97001 * 119.99136 * 179.97438 * 14 13 11 35 35 H 1.08996 * 109.45193 * 295.15989 * 20 2 1 36 36 H 1.09002 * 109.44766 * 55.10968 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5173 1.3373 -0.1560 5 6 4.1258 0.5468 1.0070 6 6 3.5150 -0.8509 1.0373 7 6 4.0817 -1.6512 2.2246 8 6 4.2331 -3.0857 1.6681 9 6 3.7301 -2.9782 0.2112 10 1 2.6787 -3.2591 0.1514 11 6 4.5595 -3.8508 -0.6955 12 1 5.3726 -4.4334 -0.2885 13 6 4.2807 -3.9043 -2.0448 14 7 3.2908 -3.1943 -2.5404 15 14 5.3082 -4.9864 -3.1685 16 1 4.7019 -6.3400 -3.2423 17 1 5.3517 -4.3887 -4.5271 18 1 6.6879 -5.0908 -2.6292 19 8 3.8993 -1.5861 -0.1383 20 6 1.9957 -0.7699 1.1355 21 1 -0.3634 0.4482 0.9247 22 1 -0.3633 0.5767 -0.8506 23 1 -0.3633 -1.0250 -0.0741 24 1 1.5577 1.9276 -0.8287 25 1 1.7376 1.8585 0.9403 26 1 3.9069 2.3553 -0.1475 27 1 3.7770 0.8560 -1.0988 28 1 3.9125 1.0579 1.9458 29 1 5.2047 0.4699 0.8712 30 1 5.0508 -1.2536 2.5260 31 1 3.3845 -1.6377 3.0624 32 1 5.2781 -3.3954 1.6896 33 1 3.6175 -3.7828 2.2365 34 1 3.0950 -3.2318 -3.4897 35 1 1.7178 -0.2780 2.0677 36 1 1.5768 -1.7761 1.1173 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686233788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:12 Heat of formation + Delta-G solvation = -67.212096 kcal Electronic energy + Delta-G solvation = -16848.102804 eV Core-core repulsion = 14330.930540 eV Total energy + Delta-G solvation = -2517.172263 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.00603 -38.09024 -34.82858 -33.80443 -32.61416 -31.16150 -28.29543 -27.61627 -25.25997 -23.79613 -22.56783 -21.44373 -20.07934 -18.66305 -17.00439 -16.50767 -16.37139 -16.12411 -15.62737 -15.48573 -15.08596 -14.31867 -13.98219 -13.83416 -13.61912 -13.33301 -13.13374 -12.81275 -12.69826 -12.63784 -12.40934 -12.09682 -11.98870 -11.68118 -11.64948 -11.13957 -11.02132 -10.91791 -10.62528 -9.80379 -8.99074 -8.07613 -6.29039 1.40147 1.42102 1.52493 2.43230 3.01347 3.18127 3.73637 3.86918 3.95205 4.13080 4.19097 4.24331 4.39321 4.44935 4.50932 4.59858 4.64802 4.66359 4.73835 4.86297 4.95914 4.99053 5.00570 5.06218 5.11685 5.24118 5.25927 5.47748 5.52598 5.64078 5.80487 6.25349 6.27254 6.35857 6.68092 7.08709 7.45343 8.98576 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029664 B = 0.009780 C = 0.008791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.685071 B = 2862.309905 C = 3184.191798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.561 5.561 3 C 0.064 3.936 4 C -0.111 4.111 5 C -0.100 4.100 6 C 0.080 3.920 7 C -0.135 4.135 8 C -0.143 4.143 9 C 0.205 3.795 10 H -0.014 1.014 11 C -0.556 4.556 12 H 0.060 0.940 13 C 0.024 3.976 14 N -0.891 5.891 15 Si 0.957 3.043 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.266 1.266 19 O -0.358 6.358 20 C 0.060 3.940 21 H 0.038 0.962 22 H 0.073 0.927 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.037 0.963 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.258 0.742 35 H 0.050 0.950 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.431 8.591 8.628 12.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.285 5.285 3 C -0.064 4.064 4 C -0.149 4.149 5 C -0.138 4.138 6 C 0.040 3.960 7 C -0.173 4.173 8 C -0.181 4.181 9 C 0.149 3.851 10 H 0.004 0.996 11 C -0.594 4.594 12 H 0.079 0.921 13 C -0.179 4.179 14 N -0.527 5.527 15 Si 0.782 3.218 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.191 1.191 19 O -0.278 6.278 20 C -0.068 4.068 21 H 0.056 0.944 22 H 0.092 0.908 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.108 0.892 27 H 0.056 0.944 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.313 8.502 7.836 11.792 hybrid contribution -0.070 -0.599 -0.090 0.610 sum -2.383 7.903 7.746 11.320 Atomic orbital electron populations 1.22284 0.86649 1.01584 1.00898 1.61643 1.08093 1.14437 1.44351 1.22064 0.95397 0.88244 1.00670 1.21503 0.94928 1.00073 0.98418 1.21505 0.99784 0.93115 0.99378 1.22112 0.92609 0.93912 0.87415 1.22879 1.01916 0.94733 0.97749 1.22962 1.01090 0.97033 0.97013 1.20268 0.93270 0.80808 0.90786 0.99611 1.21457 1.17696 1.26242 0.93979 0.92143 1.25932 0.95876 0.96152 0.99899 1.70242 1.29523 1.39912 1.13056 0.85598 0.79434 0.78867 0.77926 1.19542 1.20970 1.19074 1.89399 1.86275 1.18451 1.33634 1.22293 0.95907 0.97331 0.91302 0.94395 0.90815 0.93073 0.90584 0.93548 0.89220 0.94427 0.89021 0.92132 0.90127 0.89537 0.92336 0.91602 0.93273 0.93170 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 9.60 127.69 1.23 2.26 16 2 N -0.56 -20.99 4.88 -923.45 -4.50 -25.50 16 3 C 0.06 1.94 5.45 86.33 0.47 2.41 16 4 C -0.11 -3.64 5.99 30.68 0.18 -3.46 16 5 C -0.10 -3.29 4.90 30.52 0.15 -3.14 16 6 C 0.08 3.19 0.72 -10.78 -0.01 3.18 16 7 C -0.13 -4.69 6.17 31.48 0.19 -4.50 16 8 C -0.14 -6.08 6.62 31.66 0.21 -5.87 16 9 C 0.20 11.11 2.64 30.36 0.08 11.19 16 10 H -0.01 -0.83 7.27 -2.39 -0.02 -0.84 16 11 C -0.56 -32.85 8.77 25.60 0.22 -32.63 16 12 H 0.06 3.44 7.56 -2.91 -0.02 3.42 16 13 C 0.02 1.42 5.43 84.66 0.46 1.88 16 14 N -0.89 -55.90 13.06 21.45 0.28 -55.62 16 15 Si 0.96 45.70 29.54 68.60 2.03 47.72 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 O -0.36 -19.20 10.05 -148.98 -1.50 -20.70 16 20 C 0.06 2.24 4.15 86.12 0.36 2.59 16 21 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.07 2.05 8.09 -2.39 -0.02 2.03 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.08 2.15 8.08 -2.39 -0.02 2.13 16 25 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 27 H 0.04 1.57 7.94 -2.39 -0.02 1.55 16 28 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.08 2.52 7.85 -2.39 -0.02 2.50 16 31 H 0.09 2.49 7.84 -2.39 -0.02 2.47 16 32 H 0.06 2.49 7.70 -2.38 -0.02 2.48 16 33 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 2.01 6.95 -2.39 -0.02 1.99 16 Total: -1.00 -70.12 282.02 0.88 -69.24 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.03 Total: 10.92 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 3.55 Total: -26.06 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -4.22 Total: -81.12 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -1.50 Total: -20.70 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -70.12 0.88 -69.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686233788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.025 kcal (2) G-P(sol) polarization free energy of solvation -70.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds