Wall clock time and date at job start Mon Mar 30 2020 03:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46842 * 110.99716 * 2 1 4 4 C 1.53046 * 109.62805 * 186.21354 * 3 2 1 5 5 C 1.53230 * 109.19990 * 300.38317 * 4 3 2 6 6 C 1.52561 * 109.19398 * 56.81000 * 5 4 3 7 7 C 1.53993 * 110.10903 * 181.65006 * 6 5 4 8 8 C 1.54605 * 103.93533 * 264.60153 * 7 6 5 9 9 C 1.54517 * 104.05684 * 0.33249 * 8 7 6 10 10 H 1.08992 * 110.35763 * 95.02762 * 9 8 7 11 11 C 1.50702 * 110.35540 * 217.32544 * 9 8 7 12 12 H 1.07990 * 120.00114 * 359.97438 * 11 9 8 13 13 C 1.37882 * 119.99618 * 179.97438 * 11 9 8 14 14 N 1.31514 * 119.99646 * 179.97438 * 13 11 9 15 15 Si 1.86800 * 120.00246 * 0.02562 * 13 11 9 16 16 H 1.48499 * 109.47230 * 89.99706 * 15 13 11 17 17 H 1.48495 * 109.47191 * 209.99994 * 15 13 11 18 18 H 1.48500 * 109.47048 * 329.99523 * 15 13 11 19 19 O 1.43886 * 110.18251 * 65.77396 * 6 5 4 20 20 C 1.46947 * 111.00256 * 124.14918 * 2 1 3 21 21 H 1.08999 * 109.47219 * 63.95182 * 1 2 3 22 22 H 1.09003 * 109.46625 * 183.94989 * 1 2 3 23 23 H 1.08995 * 109.47301 * 303.94651 * 1 2 3 24 24 H 1.09003 * 109.44460 * 66.16792 * 3 2 1 25 25 H 1.08998 * 109.45134 * 306.26873 * 3 2 1 26 26 H 1.08998 * 109.51635 * 180.47148 * 4 3 2 27 27 H 1.08997 * 109.51790 * 60.29728 * 4 3 2 28 28 H 1.08997 * 109.51415 * 296.89913 * 5 4 3 29 29 H 1.08998 * 109.56090 * 176.75715 * 5 4 3 30 30 H 1.09002 * 110.53289 * 145.98801 * 7 6 5 31 31 H 1.09000 * 110.65266 * 23.27631 * 7 6 5 32 32 H 1.08996 * 110.51457 * 241.68982 * 8 7 6 33 33 H 1.09001 * 110.63084 * 119.03094 * 8 7 6 34 34 H 0.97004 * 119.99685 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.45031 * 55.09007 * 20 2 1 36 36 H 1.09004 * 109.45128 * 295.16548 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5173 1.3374 -0.1560 5 6 4.1258 0.5468 1.0070 6 6 3.5150 -0.8509 1.0372 7 6 4.0821 -1.6510 2.2246 8 6 5.2474 -2.4579 1.6072 9 6 5.2474 -2.0391 0.1199 10 1 5.9577 -1.2293 -0.0460 11 6 5.5810 -3.2186 -0.7569 12 1 5.7778 -4.1830 -0.3126 13 6 5.6350 -3.0663 -2.1262 14 7 5.9267 -4.0954 -2.8912 15 14 5.2953 -1.3978 -2.8945 16 1 6.5658 -0.6376 -3.0090 17 1 4.7072 -1.5853 -4.2451 18 1 4.3427 -0.6442 -2.0402 19 8 3.8995 -1.5862 -0.1383 20 6 1.9957 -0.7701 1.1353 21 1 -0.3633 0.4513 -0.9233 22 1 -0.3633 -1.0253 0.0708 23 1 -0.3633 0.5738 0.8525 24 1 1.7375 1.8585 0.9402 25 1 1.5577 1.9276 -0.8286 26 1 3.9068 2.3554 -0.1474 27 1 3.7762 0.8555 -1.0988 28 1 3.9123 1.0578 1.9458 29 1 5.2046 0.4700 0.8712 30 1 3.3248 -2.3220 2.6299 31 1 4.4507 -0.9792 2.9998 32 1 5.0636 -3.5281 1.7026 33 1 6.1926 -2.1901 2.0794 34 1 5.9650 -3.9882 -3.8546 35 1 1.5767 -1.7762 1.1171 36 1 1.7178 -0.2784 2.0676 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686233792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:18 Heat of formation + Delta-G solvation = -41.445906 kcal Electronic energy + Delta-G solvation = -16949.498942 eV Core-core repulsion = 14433.443984 eV Total energy + Delta-G solvation = -2516.054958 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73073 -36.90635 -32.88430 -32.19977 -31.22934 -30.13046 -26.75523 -26.49552 -23.38293 -22.72189 -21.00082 -19.85837 -18.80940 -16.89260 -15.79932 -15.13776 -14.97735 -14.46535 -14.24715 -13.98894 -13.75050 -13.07994 -12.57494 -12.53250 -12.18726 -11.86127 -11.85053 -11.67079 -11.17255 -11.05714 -10.75134 -10.61662 -10.44639 -9.96568 -9.82023 -9.59945 -9.51387 -9.28301 -8.46432 -8.20434 -7.96827 -6.02164 -4.10294 3.46019 3.54001 3.79243 4.14271 4.62033 4.78987 5.09220 5.14956 5.30832 5.35267 5.49006 5.51805 5.54171 5.59248 5.72125 5.73873 5.84175 5.94634 5.96782 5.98506 6.11045 6.25099 6.26347 6.34617 6.54337 6.57204 6.67656 6.76277 6.85692 7.22844 7.34480 7.37356 7.70775 8.33387 8.53271 8.98614 9.61943 11.08118 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027205 B = 0.011909 C = 0.010200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.958929 B = 2350.652257 C = 2744.326752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.532 5.532 3 C 0.062 3.938 4 C -0.122 4.122 5 C -0.132 4.132 6 C 0.098 3.902 7 C -0.144 4.144 8 C -0.135 4.135 9 C 0.167 3.833 10 H 0.022 0.978 11 C -0.518 4.518 12 H 0.076 0.924 13 C 0.083 3.917 14 N -0.895 5.895 15 Si 0.862 3.138 16 H -0.288 1.288 17 H -0.294 1.294 18 H -0.209 1.209 19 O -0.339 6.339 20 C 0.076 3.924 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.017 0.983 24 H 0.024 0.976 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.264 0.736 35 H 0.080 0.920 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 10.918 8.691 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.256 5.256 3 C -0.066 4.066 4 C -0.160 4.160 5 C -0.170 4.170 6 C 0.057 3.943 7 C -0.183 4.183 8 C -0.173 4.173 9 C 0.111 3.889 10 H 0.040 0.960 11 C -0.554 4.554 12 H 0.094 0.906 13 C -0.120 4.120 14 N -0.533 5.533 15 Si 0.689 3.311 16 H -0.215 1.215 17 H -0.220 1.220 18 H -0.132 1.132 19 O -0.259 6.259 20 C -0.052 4.052 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.036 0.964 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.595 10.592 7.896 15.239 hybrid contribution -0.244 1.113 0.395 1.206 sum -7.839 11.705 8.292 16.346 Atomic orbital electron populations 1.22335 0.87878 1.01708 1.00101 1.61798 1.06647 1.13301 1.43816 1.22037 0.96163 0.89076 0.99342 1.21689 0.93939 0.99231 1.01114 1.21949 1.01001 0.96250 0.97784 1.21719 0.92698 0.91537 0.88344 1.22892 0.98956 0.98840 0.97574 1.22855 0.96249 1.00369 0.97795 1.20962 0.81842 0.94314 0.91757 0.96037 1.20962 1.47636 0.95759 0.91089 0.90567 1.25048 0.92554 0.97218 0.97227 1.69930 1.47672 1.30779 1.04905 0.87130 0.79521 0.85431 0.79049 1.21511 1.22015 1.13217 1.89569 1.32481 1.69530 1.34291 1.22020 0.94477 0.98365 0.90350 0.91664 0.91437 0.96415 0.95790 0.91318 0.92313 0.89479 0.92622 0.91324 0.91713 0.92060 0.91238 0.92548 0.92661 0.90202 0.95012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.62 60.07 0.58 0.95 16 2 N -0.53 -8.81 4.88 -243.24 -1.19 -9.99 16 3 C 0.06 0.91 5.44 -3.83 -0.02 0.89 16 4 C -0.12 -1.98 5.99 -26.59 -0.16 -2.14 16 5 C -0.13 -2.19 4.73 -26.84 -0.13 -2.31 16 6 C 0.10 1.81 0.72 -90.60 -0.07 1.75 16 7 C -0.14 -2.45 6.16 -25.37 -0.16 -2.61 16 8 C -0.13 -2.72 6.62 -25.09 -0.17 -2.88 16 9 C 0.17 4.04 2.09 -27.09 -0.06 3.99 16 10 H 0.02 0.53 6.58 -51.93 -0.34 0.19 16 11 C -0.52 -15.05 9.35 -34.44 -0.32 -15.37 16 12 H 0.08 2.37 7.81 -52.49 -0.41 1.96 16 13 C 0.08 2.50 5.47 -17.82 -0.10 2.40 16 14 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 15 Si 0.86 22.29 27.04 -169.99 -4.60 17.70 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 17 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 18 H -0.21 -5.20 3.51 56.52 0.20 -5.00 16 19 O -0.34 -8.02 7.71 -35.23 -0.27 -8.30 16 20 C 0.08 1.25 4.34 -4.07 -0.02 1.23 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 23 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.09 1.70 5.91 -51.93 -0.31 1.39 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.19 6.92 -51.93 -0.36 0.83 16 30 H 0.06 1.03 7.85 -51.93 -0.41 0.62 16 31 H 0.06 0.89 7.85 -51.93 -0.41 0.49 16 32 H 0.07 1.46 7.70 -51.93 -0.40 1.06 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 35 H 0.08 1.36 8.06 -51.93 -0.42 0.94 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 271.95 15.07 4.10 4.10 Total: -1.00 -31.95 271.95 -7.98 -39.93 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -6.19 Total: -1.91 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -0.61 Total: -14.10 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.41 Total: -37.42 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.27 Total: -8.30 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.60 Total: 17.70 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.95 -7.98 -39.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686233792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.519 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds