Wall clock time and date at job start Mon Mar 30 2020 03:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46842 * 110.99716 * 2 1 4 4 C 1.53046 * 109.62805 * 186.21354 * 3 2 1 5 5 C 1.53230 * 109.19990 * 300.38317 * 4 3 2 6 6 C 1.52561 * 109.19398 * 56.81000 * 5 4 3 7 7 C 1.53993 * 110.10903 * 181.65006 * 6 5 4 8 8 C 1.54605 * 103.93533 * 264.60153 * 7 6 5 9 9 C 1.54517 * 104.05684 * 0.33249 * 8 7 6 10 10 H 1.08992 * 110.35763 * 95.02762 * 9 8 7 11 11 C 1.50702 * 110.35540 * 217.32544 * 9 8 7 12 12 H 1.07990 * 120.00114 * 359.97438 * 11 9 8 13 13 C 1.37882 * 119.99618 * 179.97438 * 11 9 8 14 14 N 1.31514 * 119.99646 * 179.97438 * 13 11 9 15 15 Si 1.86800 * 120.00246 * 0.02562 * 13 11 9 16 16 H 1.48499 * 109.47230 * 89.99706 * 15 13 11 17 17 H 1.48495 * 109.47191 * 209.99994 * 15 13 11 18 18 H 1.48500 * 109.47048 * 329.99523 * 15 13 11 19 19 O 1.43886 * 110.18251 * 65.77396 * 6 5 4 20 20 C 1.46947 * 111.00256 * 124.14918 * 2 1 3 21 21 H 1.08999 * 109.47219 * 63.95182 * 1 2 3 22 22 H 1.09003 * 109.46625 * 183.94989 * 1 2 3 23 23 H 1.08995 * 109.47301 * 303.94651 * 1 2 3 24 24 H 1.09003 * 109.44460 * 66.16792 * 3 2 1 25 25 H 1.08998 * 109.45134 * 306.26873 * 3 2 1 26 26 H 1.08998 * 109.51635 * 180.47148 * 4 3 2 27 27 H 1.08997 * 109.51790 * 60.29728 * 4 3 2 28 28 H 1.08997 * 109.51415 * 296.89913 * 5 4 3 29 29 H 1.08998 * 109.56090 * 176.75715 * 5 4 3 30 30 H 1.09002 * 110.53289 * 145.98801 * 7 6 5 31 31 H 1.09000 * 110.65266 * 23.27631 * 7 6 5 32 32 H 1.08996 * 110.51457 * 241.68982 * 8 7 6 33 33 H 1.09001 * 110.63084 * 119.03094 * 8 7 6 34 34 H 0.97004 * 119.99685 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.45031 * 55.09007 * 20 2 1 36 36 H 1.09004 * 109.45128 * 295.16548 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5173 1.3374 -0.1560 5 6 4.1258 0.5468 1.0070 6 6 3.5150 -0.8509 1.0372 7 6 4.0821 -1.6510 2.2246 8 6 5.2474 -2.4579 1.6072 9 6 5.2474 -2.0391 0.1199 10 1 5.9577 -1.2293 -0.0460 11 6 5.5810 -3.2186 -0.7569 12 1 5.7778 -4.1830 -0.3126 13 6 5.6350 -3.0663 -2.1262 14 7 5.9267 -4.0954 -2.8912 15 14 5.2953 -1.3978 -2.8945 16 1 6.5658 -0.6376 -3.0090 17 1 4.7072 -1.5853 -4.2451 18 1 4.3427 -0.6442 -2.0402 19 8 3.8995 -1.5862 -0.1383 20 6 1.9957 -0.7701 1.1353 21 1 -0.3633 0.4513 -0.9233 22 1 -0.3633 -1.0253 0.0708 23 1 -0.3633 0.5738 0.8525 24 1 1.7375 1.8585 0.9402 25 1 1.5577 1.9276 -0.8286 26 1 3.9068 2.3554 -0.1474 27 1 3.7762 0.8555 -1.0988 28 1 3.9123 1.0578 1.9458 29 1 5.2046 0.4700 0.8712 30 1 3.3248 -2.3220 2.6299 31 1 4.4507 -0.9792 2.9998 32 1 5.0636 -3.5281 1.7026 33 1 6.1926 -2.1901 2.0794 34 1 5.9650 -3.9882 -3.8546 35 1 1.5767 -1.7762 1.1171 36 1 1.7178 -0.2784 2.0676 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686233792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:18 Heat of formation + Delta-G solvation = -64.214057 kcal Electronic energy + Delta-G solvation = -16950.486243 eV Core-core repulsion = 14433.443984 eV Total energy + Delta-G solvation = -2517.042259 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.16293 -38.28335 -34.82813 -33.70630 -32.78789 -31.73929 -28.51216 -27.61470 -25.05520 -23.92522 -22.45539 -21.50661 -20.16301 -19.06569 -17.24760 -16.55772 -16.52058 -16.05053 -15.53801 -15.49110 -15.13261 -14.71276 -14.46675 -13.90473 -13.54390 -13.20819 -13.16254 -12.95632 -12.76943 -12.65365 -12.36807 -12.00907 -11.91688 -11.81368 -11.41721 -11.21562 -11.17398 -11.07417 -10.66492 -9.94416 -9.08824 -8.33185 -6.45181 1.36585 1.42471 1.73416 2.45268 2.91428 3.07601 3.56194 3.86729 3.89660 4.05576 4.17034 4.19451 4.32269 4.44236 4.49839 4.56506 4.65502 4.67597 4.74886 4.77422 4.88097 4.99346 5.02220 5.03080 5.07358 5.14345 5.21077 5.41562 5.46767 5.55096 5.60025 6.19875 6.23568 6.29359 6.53253 6.78574 7.31298 8.80644 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027205 B = 0.011909 C = 0.010200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.958929 B = 2350.652257 C = 2744.326752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.567 5.567 3 C 0.064 3.936 4 C -0.124 4.124 5 C -0.131 4.131 6 C 0.084 3.916 7 C -0.133 4.133 8 C -0.135 4.135 9 C 0.169 3.831 10 H 0.022 0.978 11 C -0.527 4.527 12 H 0.037 0.963 13 C 0.026 3.974 14 N -0.944 5.944 15 Si 0.927 3.073 16 H -0.279 1.279 17 H -0.301 1.301 18 H -0.193 1.193 19 O -0.368 6.368 20 C 0.079 3.921 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.038 0.962 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.265 0.735 35 H 0.065 0.935 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.925 13.923 10.539 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.292 5.292 3 C -0.064 4.064 4 C -0.162 4.162 5 C -0.168 4.168 6 C 0.044 3.956 7 C -0.171 4.171 8 C -0.173 4.173 9 C 0.113 3.887 10 H 0.040 0.960 11 C -0.564 4.564 12 H 0.055 0.945 13 C -0.173 4.173 14 N -0.584 5.584 15 Si 0.751 3.249 16 H -0.205 1.205 17 H -0.228 1.228 18 H -0.115 1.115 19 O -0.288 6.288 20 C -0.049 4.049 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.066 0.934 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.895 13.605 9.773 18.966 hybrid contribution 0.139 0.122 -0.122 0.222 sum -8.755 13.727 9.651 18.927 Atomic orbital electron populations 1.22338 0.86079 1.01982 1.01337 1.61755 1.08572 1.14506 1.44320 1.22050 0.94940 0.88450 1.00928 1.21698 0.95362 1.00198 0.98936 1.21955 1.00039 0.95214 0.99624 1.22130 0.94467 0.92269 0.86716 1.22869 0.97631 0.98914 0.97694 1.22788 0.98958 0.99832 0.95686 1.20728 0.82488 0.92344 0.93118 0.95995 1.21318 1.47046 0.96126 0.91929 0.94480 1.25945 0.92573 1.00885 0.97931 1.70067 1.49974 1.33091 1.05246 0.86150 0.79944 0.81139 0.77664 1.20512 1.22757 1.11508 1.89453 1.31426 1.70684 1.37204 1.21944 0.92792 0.98241 0.91878 0.91052 0.91840 0.94328 0.93438 0.90414 0.89674 0.93357 0.89216 0.92554 0.90686 0.88572 0.93192 0.90633 0.92596 0.91636 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.62 127.69 1.23 1.93 16 2 N -0.57 -17.03 4.88 -923.46 -4.50 -21.53 16 3 C 0.06 1.62 5.44 86.33 0.47 2.09 16 4 C -0.12 -3.59 5.99 30.69 0.18 -3.41 16 5 C -0.13 -3.81 4.73 30.53 0.14 -3.67 16 6 C 0.08 2.88 0.72 -10.78 -0.01 2.87 16 7 C -0.13 -4.08 6.16 31.48 0.19 -3.89 16 8 C -0.13 -5.29 6.62 31.66 0.21 -5.08 16 9 C 0.17 8.18 2.09 30.36 0.06 8.25 16 10 H 0.02 1.07 6.58 -2.39 -0.02 1.06 16 11 C -0.53 -31.74 9.35 25.60 0.24 -31.50 16 12 H 0.04 2.44 7.81 -2.92 -0.02 2.42 16 13 C 0.03 1.57 5.47 84.66 0.46 2.04 16 14 N -0.94 -61.83 13.96 21.45 0.30 -61.53 16 15 Si 0.93 47.30 27.04 68.60 1.86 49.15 16 16 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 17 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 18 H -0.19 -9.34 3.51 99.48 0.35 -8.99 16 19 O -0.37 -17.06 7.71 -148.98 -1.15 -18.21 16 20 C 0.08 2.36 4.34 86.12 0.37 2.74 16 21 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.06 1.48 8.04 -2.39 -0.02 1.46 16 23 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 1.81 8.12 -2.39 -0.02 1.79 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.05 1.77 5.91 -2.39 -0.01 1.76 16 28 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 1.78 6.92 -2.39 -0.02 1.76 16 30 H 0.07 2.15 7.85 -2.39 -0.02 2.13 16 31 H 0.10 2.31 7.85 -2.39 -0.02 2.29 16 32 H 0.05 2.12 7.70 -2.39 -0.02 2.10 16 33 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.27 16.32 8.31 -92.71 -0.77 15.55 16 35 H 0.07 2.10 8.06 -2.39 -0.02 2.08 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -71.61 271.95 0.74 -70.88 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.67 Total: 8.86 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 3.56 Total: -27.63 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -4.20 Total: -83.06 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.15 Total: -18.21 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.86 Total: 49.15 kcal Total: -71.61 0.74 -70.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686233792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.663 kcal (2) G-P(sol) polarization free energy of solvation -71.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds