Wall clock time and date at job start Mon Mar 30 2020 03:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 119.99755 * 2 1 4 4 H 1.08001 * 119.99758 * 171.07244 * 3 2 1 5 5 C 1.38811 * 120.00007 * 351.07232 * 3 2 1 6 6 N 1.31617 * 120.00083 * 6.44600 * 5 3 2 7 7 Si 1.86798 * 119.99759 * 186.44312 * 5 3 2 8 8 H 1.48506 * 109.46843 * 90.00493 * 7 5 3 9 9 H 1.48505 * 109.47218 * 210.00025 * 7 5 3 10 10 H 1.48498 * 109.47537 * 330.00379 * 7 5 3 11 11 C 1.46497 * 120.00145 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47003 * 91.31909 * 11 2 1 13 13 C 1.54195 * 111.96908 * 297.34578 * 12 11 2 14 14 C 1.55098 * 103.85817 * 263.67457 * 13 12 11 15 15 C 1.54998 * 102.11111 * 319.35592 * 14 13 12 16 16 C 1.54451 * 104.16131 * 39.55260 * 15 14 13 17 17 H 1.09000 * 111.44217 * 98.02219 * 16 15 14 18 18 O 1.43803 * 108.49201 * 221.07230 * 16 15 14 19 19 C 1.44290 * 107.24983 * 139.99159 * 18 16 15 20 20 C 1.54986 * 103.48727 * 320.02888 * 19 18 16 21 21 H 1.09001 * 109.46873 * 185.19715 * 1 2 3 22 22 H 1.08993 * 109.46935 * 305.20058 * 1 2 3 23 23 H 1.08999 * 109.47185 * 65.20303 * 1 2 3 24 24 H 0.96998 * 119.99762 * 179.97438 * 6 5 3 25 25 H 1.09002 * 109.47500 * 331.32236 * 11 2 1 26 26 H 1.08997 * 109.47365 * 211.31676 * 11 2 1 27 27 H 1.09005 * 110.57562 * 145.03680 * 13 12 11 28 28 H 1.09005 * 110.57129 * 22.31126 * 13 12 11 29 29 H 1.09001 * 110.90234 * 77.55749 * 14 13 12 30 30 H 1.09001 * 110.90688 * 201.14881 * 14 13 12 31 31 H 1.08999 * 110.49291 * 158.22527 * 15 14 13 32 32 H 1.09007 * 110.48953 * 280.88390 * 15 14 13 33 33 H 1.08994 * 110.61725 * 78.52958 * 19 18 16 34 34 H 1.08997 * 110.62216 * 201.53339 * 19 18 16 35 35 H 1.09006 * 110.90328 * 155.63411 * 20 19 18 36 36 H 1.09000 * 110.91266 * 279.20798 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2199 1.1916 0.1452 5 6 1.4682 2.3808 -0.1866 6 7 0.1530 2.3874 -0.2365 7 14 2.4178 3.9793 -0.3667 8 1 2.7210 4.2159 -1.8011 9 1 1.6004 5.1025 0.1582 10 1 3.6868 3.8903 0.3994 11 6 2.1976 -1.2687 -0.0006 12 6 2.4813 -1.6931 -1.4429 13 6 1.1833 -1.9491 -2.2349 14 6 0.9827 -3.4837 -2.1334 15 6 2.4288 -4.0130 -2.3103 16 6 3.2971 -3.0130 -1.5156 17 1 3.5317 -3.3919 -0.5208 18 8 4.4910 -2.7449 -2.2709 19 6 4.7715 -1.3355 -2.1418 20 6 3.3703 -0.6787 -2.2275 21 1 -0.3633 -1.0235 0.0931 22 1 -0.3633 0.5924 0.8397 23 1 -0.3633 0.4310 -0.9329 24 1 -0.3232 3.2224 -0.3665 25 1 1.5985 -2.0344 0.4922 26 1 3.1395 -1.1446 0.5336 27 1 1.3032 -1.6463 -3.2751 28 1 0.3456 -1.4222 -1.7779 29 1 0.5841 -3.7601 -1.1573 30 1 0.3357 -3.8451 -2.9327 31 1 2.5219 -5.0154 -1.8925 32 1 2.7101 -4.0098 -3.3634 33 1 5.2366 -1.1233 -1.1792 34 1 5.4061 -0.9939 -2.9595 35 1 3.3656 0.2934 -1.7342 36 1 3.0457 -0.5884 -3.2641 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687526862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:20 Heat of formation + Delta-G solvation = -22.804046 kcal Electronic energy + Delta-G solvation = -16892.631879 eV Core-core repulsion = 14377.385293 eV Total energy + Delta-G solvation = -2515.246586 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.87707 -35.89173 -34.65122 -31.82061 -30.38159 -27.85769 -26.97491 -25.87951 -24.80364 -21.84478 -20.79294 -20.22834 -18.48207 -16.77873 -15.82451 -15.59696 -14.81692 -14.70659 -13.95839 -13.49759 -13.22843 -13.07960 -12.82784 -12.11083 -11.79593 -11.45758 -11.27347 -11.00297 -10.80852 -10.69784 -10.60241 -10.38788 -10.28424 -10.12648 -10.06361 -9.90898 -9.65269 -9.52752 -9.13218 -8.48453 -6.86769 -5.64607 -3.05498 3.37916 3.44038 3.45404 4.28182 4.49126 4.90754 4.98910 5.35526 5.43484 5.54414 5.55192 5.64002 5.75126 5.79914 5.95692 5.97804 6.01630 6.04992 6.16460 6.20215 6.31213 6.52825 6.54657 6.67797 6.71993 6.77583 6.85810 6.93075 7.06858 7.41268 7.65008 7.72295 7.95282 8.39251 9.28164 9.91747 10.36047 11.35199 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034093 B = 0.009918 C = 0.008372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.075609 B = 2822.514141 C = 3343.854291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.607 5.607 3 C -0.240 4.240 4 H 0.073 0.927 5 C -0.004 4.004 6 N -0.915 5.915 7 Si 0.901 3.099 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.174 3.826 12 C -0.102 4.102 13 C -0.109 4.109 14 C -0.124 4.124 15 C -0.122 4.122 16 C 0.073 3.927 17 H 0.069 0.931 18 O -0.386 6.386 19 C 0.046 3.954 20 C -0.144 4.144 21 H -0.009 1.009 22 H 0.042 0.958 23 H 0.040 0.960 24 H 0.249 0.751 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.473 -9.213 -2.990 10.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.330 5.330 3 C -0.369 4.369 4 H 0.091 0.909 5 C -0.200 4.200 6 N -0.563 5.563 7 Si 0.732 3.268 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.207 1.207 11 C 0.045 3.955 12 C -0.105 4.105 13 C -0.146 4.146 14 C -0.162 4.162 15 C -0.160 4.160 16 C 0.015 3.985 17 H 0.087 0.913 18 O -0.305 6.305 19 C -0.030 4.030 20 C -0.181 4.181 21 H 0.009 0.991 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.462 -9.196 -3.098 10.303 hybrid contribution 0.416 1.104 -0.133 1.187 sum 3.878 -8.092 -3.230 9.537 Atomic orbital electron populations 1.21043 0.81792 0.92809 1.01621 1.43974 1.02245 1.00393 1.86339 1.19206 0.91680 0.83961 1.42051 0.90909 1.24871 0.95671 0.97797 1.01665 1.70206 1.05135 1.24987 1.55967 0.86282 0.78894 0.83756 0.77867 1.21570 1.21798 1.20702 1.20593 0.95580 0.88229 0.91055 1.23557 0.94825 0.92488 0.99628 1.22484 0.98379 0.94430 0.99351 1.22601 0.95666 0.96768 1.01162 1.22560 0.94964 0.97637 1.00792 1.23668 0.84830 0.96005 0.94013 0.91296 1.88754 1.44404 1.25278 1.72080 1.23551 0.97867 0.81049 1.00551 1.23503 0.92932 1.01577 1.00092 0.99095 0.93909 0.94196 0.93994 0.94025 0.93966 0.92469 0.89947 0.91632 0.92016 0.92101 0.91001 0.92744 0.90110 0.87452 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.17 7.18 59.85 0.43 4.60 16 2 N -0.61 -14.62 2.74 -181.12 -0.50 -15.12 16 3 C -0.24 -6.29 7.70 -15.06 -0.12 -6.41 16 4 H 0.07 1.87 7.48 -52.49 -0.39 1.47 16 5 C 0.00 -0.10 5.46 -17.43 -0.10 -0.20 16 6 N -0.92 -26.04 9.48 55.49 0.53 -25.51 16 7 Si 0.90 21.57 29.56 -169.99 -5.02 16.54 16 8 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 C 0.17 3.48 4.92 -4.04 -0.02 3.46 16 12 C -0.10 -1.84 0.67 -151.01 -0.10 -1.94 16 13 C -0.11 -1.92 5.88 -25.00 -0.15 -2.06 16 14 C -0.12 -1.79 6.92 -24.57 -0.17 -1.96 16 15 C -0.12 -1.75 6.52 -24.91 -0.16 -1.92 16 16 C 0.07 1.20 3.96 -24.73 -0.10 1.10 16 17 H 0.07 1.08 7.87 -51.93 -0.41 0.68 16 18 O -0.39 -6.73 11.03 -35.23 -0.39 -7.12 16 19 C 0.05 0.76 7.72 38.21 0.29 1.06 16 20 C -0.14 -2.68 6.28 -24.05 -0.15 -2.83 16 21 H -0.01 -0.20 7.25 -51.93 -0.38 -0.58 16 22 H 0.04 1.14 7.09 -51.93 -0.37 0.78 16 23 H 0.04 1.05 6.83 -51.93 -0.35 0.70 16 24 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.04 0.78 7.85 -51.93 -0.41 0.38 16 26 H 0.04 0.85 8.05 -51.93 -0.42 0.43 16 27 H 0.06 1.01 7.26 -51.93 -0.38 0.63 16 28 H 0.08 1.61 5.00 -51.93 -0.26 1.36 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.06 8.01 -51.92 -0.42 0.64 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.11 2.29 5.29 -51.93 -0.27 2.01 16 36 H 0.06 1.15 7.29 -51.93 -0.38 0.78 16 LS Contribution 271.63 15.07 4.09 4.09 Total: -1.00 -28.00 271.63 -7.31 -35.30 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.68 Total: -1.09 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -0.34 Total: -7.11 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.03 Total: -40.63 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.39 Total: -7.12 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.00 -7.31 -35.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687526862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.501 kcal (2) G-P(sol) polarization free energy of solvation -27.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds