Wall clock time and date at job start Mon Mar 30 2020 03:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 119.99755 * 2 1 4 4 H 1.08001 * 119.99758 * 171.07244 * 3 2 1 5 5 C 1.38811 * 120.00007 * 351.07232 * 3 2 1 6 6 N 1.31617 * 120.00083 * 6.44600 * 5 3 2 7 7 Si 1.86798 * 119.99759 * 186.44312 * 5 3 2 8 8 H 1.48506 * 109.46843 * 90.00493 * 7 5 3 9 9 H 1.48505 * 109.47218 * 210.00025 * 7 5 3 10 10 H 1.48498 * 109.47537 * 330.00379 * 7 5 3 11 11 C 1.46497 * 120.00145 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47003 * 91.31909 * 11 2 1 13 13 C 1.54195 * 111.96908 * 297.34578 * 12 11 2 14 14 C 1.55098 * 103.85817 * 263.67457 * 13 12 11 15 15 C 1.54998 * 102.11111 * 319.35592 * 14 13 12 16 16 C 1.54451 * 104.16131 * 39.55260 * 15 14 13 17 17 H 1.09000 * 111.44217 * 98.02219 * 16 15 14 18 18 O 1.43803 * 108.49201 * 221.07230 * 16 15 14 19 19 C 1.44290 * 107.24983 * 139.99159 * 18 16 15 20 20 C 1.54986 * 103.48727 * 320.02888 * 19 18 16 21 21 H 1.09001 * 109.46873 * 185.19715 * 1 2 3 22 22 H 1.08993 * 109.46935 * 305.20058 * 1 2 3 23 23 H 1.08999 * 109.47185 * 65.20303 * 1 2 3 24 24 H 0.96998 * 119.99762 * 179.97438 * 6 5 3 25 25 H 1.09002 * 109.47500 * 331.32236 * 11 2 1 26 26 H 1.08997 * 109.47365 * 211.31676 * 11 2 1 27 27 H 1.09005 * 110.57562 * 145.03680 * 13 12 11 28 28 H 1.09005 * 110.57129 * 22.31126 * 13 12 11 29 29 H 1.09001 * 110.90234 * 77.55749 * 14 13 12 30 30 H 1.09001 * 110.90688 * 201.14881 * 14 13 12 31 31 H 1.08999 * 110.49291 * 158.22527 * 15 14 13 32 32 H 1.09007 * 110.48953 * 280.88390 * 15 14 13 33 33 H 1.08994 * 110.61725 * 78.52958 * 19 18 16 34 34 H 1.08997 * 110.62216 * 201.53339 * 19 18 16 35 35 H 1.09006 * 110.90328 * 155.63411 * 20 19 18 36 36 H 1.09000 * 110.91266 * 279.20798 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2199 1.1916 0.1452 5 6 1.4682 2.3808 -0.1866 6 7 0.1530 2.3874 -0.2365 7 14 2.4178 3.9793 -0.3667 8 1 2.7210 4.2159 -1.8011 9 1 1.6004 5.1025 0.1582 10 1 3.6868 3.8903 0.3994 11 6 2.1976 -1.2687 -0.0006 12 6 2.4813 -1.6931 -1.4429 13 6 1.1833 -1.9491 -2.2349 14 6 0.9827 -3.4837 -2.1334 15 6 2.4288 -4.0130 -2.3103 16 6 3.2971 -3.0130 -1.5156 17 1 3.5317 -3.3919 -0.5208 18 8 4.4910 -2.7449 -2.2709 19 6 4.7715 -1.3355 -2.1418 20 6 3.3703 -0.6787 -2.2275 21 1 -0.3633 -1.0235 0.0931 22 1 -0.3633 0.5924 0.8397 23 1 -0.3633 0.4310 -0.9329 24 1 -0.3232 3.2224 -0.3665 25 1 1.5985 -2.0344 0.4922 26 1 3.1395 -1.1446 0.5336 27 1 1.3032 -1.6463 -3.2751 28 1 0.3456 -1.4222 -1.7779 29 1 0.5841 -3.7601 -1.1573 30 1 0.3357 -3.8451 -2.9327 31 1 2.5219 -5.0154 -1.8925 32 1 2.7101 -4.0098 -3.3634 33 1 5.2366 -1.1233 -1.1792 34 1 5.4061 -0.9939 -2.9595 35 1 3.3656 0.2934 -1.7342 36 1 3.0457 -0.5884 -3.2641 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687526862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:20 Heat of formation + Delta-G solvation = -38.911180 kcal Electronic energy + Delta-G solvation = -16893.330337 eV Core-core repulsion = 14377.385293 eV Total energy + Delta-G solvation = -2515.945044 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.25826 -37.59551 -36.12113 -33.53415 -32.07008 -29.32356 -28.49193 -27.71877 -26.39583 -23.48311 -22.39022 -21.48848 -19.93060 -18.76209 -17.20349 -16.94929 -16.76452 -16.05672 -15.49586 -15.14998 -14.90403 -14.61024 -14.27392 -13.74761 -13.43607 -13.04688 -12.74233 -12.73714 -12.68086 -12.32821 -12.14331 -11.97202 -11.94316 -11.65418 -11.55115 -11.47050 -11.32116 -11.02999 -10.53768 -10.45383 -8.85203 -7.71249 -5.12443 1.46470 1.47730 1.54998 2.52403 2.97728 3.34575 3.54561 3.67925 3.92711 4.09106 4.24715 4.28508 4.36654 4.43350 4.54814 4.57921 4.68475 4.83237 4.85621 4.87923 4.98663 5.02093 5.09034 5.18312 5.24201 5.37409 5.44205 5.48346 5.51521 5.59786 5.69206 5.91438 6.08386 6.35366 7.22310 7.95575 8.34788 9.27410 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034093 B = 0.009918 C = 0.008372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.075609 B = 2822.514141 C = 3343.854291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.192 3.808 2 N -0.618 5.618 3 C -0.233 4.233 4 H 0.077 0.923 5 C -0.061 4.061 6 N -0.945 5.945 7 Si 0.959 3.041 8 H -0.290 1.290 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.172 3.828 12 C -0.102 4.102 13 C -0.112 4.112 14 C -0.114 4.114 15 C -0.115 4.115 16 C 0.074 3.926 17 H 0.080 0.920 18 O -0.393 6.393 19 C 0.052 3.948 20 C -0.146 4.146 21 H 0.020 0.980 22 H 0.011 0.989 23 H 0.012 0.988 24 H 0.241 0.759 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.627 -10.960 -3.191 12.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.341 5.341 3 C -0.363 4.363 4 H 0.095 0.905 5 C -0.254 4.254 6 N -0.595 5.595 7 Si 0.789 3.211 8 H -0.217 1.217 9 H -0.226 1.226 10 H -0.195 1.195 11 C 0.046 3.954 12 C -0.105 4.105 13 C -0.149 4.149 14 C -0.152 4.152 15 C -0.153 4.153 16 C 0.016 3.984 17 H 0.098 0.902 18 O -0.313 6.313 19 C -0.024 4.024 20 C -0.184 4.184 21 H 0.039 0.961 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.649 -10.979 -3.296 12.370 hybrid contribution 0.083 1.596 -0.059 1.599 sum 4.732 -9.383 -3.355 11.031 Atomic orbital electron populations 1.20666 0.82186 0.93607 0.98829 1.44155 1.02286 1.01383 1.86303 1.19476 0.91906 0.84797 1.40118 0.90516 1.25550 0.96454 1.00660 1.02727 1.70403 1.06308 1.24939 1.57804 0.85358 0.77997 0.80205 0.77552 1.21687 1.22648 1.19457 1.20733 0.95321 0.86844 0.92512 1.23398 0.95508 0.93572 0.97990 1.22437 0.97125 0.96884 0.98466 1.22565 0.96322 0.93903 1.02399 1.22543 0.93995 0.98254 1.00502 1.23738 0.84488 0.95185 0.95029 0.90177 1.88752 1.44750 1.25401 1.72350 1.23554 0.96666 0.80534 1.01662 1.23425 0.94937 1.00517 0.99508 0.96144 0.97025 0.96957 0.94870 0.92411 0.93964 0.93230 0.92367 0.90757 0.90245 0.89588 0.91235 0.92304 0.88192 0.90359 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.44 7.18 127.77 0.92 10.35 16 2 N -0.62 -29.74 2.74 -726.94 -1.99 -31.73 16 3 C -0.23 -12.27 7.70 84.03 0.65 -11.62 16 4 H 0.08 3.91 7.48 -2.91 -0.02 3.89 16 5 C -0.06 -3.36 5.46 84.86 0.46 -2.90 16 6 N -0.94 -55.26 9.48 21.65 0.21 -55.05 16 7 Si 0.96 44.93 29.56 68.60 2.03 46.96 16 8 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 9 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 C 0.17 6.66 4.92 86.38 0.42 7.08 16 12 C -0.10 -3.52 0.67 -49.92 -0.03 -3.55 16 13 C -0.11 -3.77 5.88 31.72 0.19 -3.59 16 14 C -0.11 -2.94 6.92 32.00 0.22 -2.72 16 15 C -0.12 -2.89 6.52 31.77 0.21 -2.69 16 16 C 0.07 2.19 3.96 31.89 0.13 2.32 16 17 H 0.08 2.23 7.87 -2.39 -0.02 2.21 16 18 O -0.39 -12.61 11.03 -148.98 -1.64 -14.25 16 19 C 0.05 1.61 7.72 72.66 0.56 2.17 16 20 C -0.15 -5.34 6.28 32.33 0.20 -5.14 16 21 H 0.02 0.86 7.25 -2.39 -0.02 0.84 16 22 H 0.01 0.62 7.09 -2.39 -0.02 0.60 16 23 H 0.01 0.66 6.83 -2.39 -0.02 0.64 16 24 H 0.24 13.93 8.31 -92.71 -0.77 13.16 16 25 H 0.06 2.04 7.85 -2.39 -0.02 2.02 16 26 H 0.04 1.62 8.05 -2.39 -0.02 1.61 16 27 H 0.05 1.72 7.26 -2.38 -0.02 1.70 16 28 H 0.06 2.25 5.00 -2.38 -0.01 2.24 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 1.80 8.01 -2.38 -0.02 1.79 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.08 3.33 5.29 -2.38 -0.01 3.32 16 36 H 0.06 2.11 7.29 -2.39 -0.02 2.10 16 Total: -1.00 -59.75 271.63 3.57 -56.18 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.05 Total: 8.18 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 3.92 Total: -10.28 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -1.79 Total: -86.78 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -1.64 Total: -14.25 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -59.75 3.57 -56.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687526862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.268 kcal (2) G-P(sol) polarization free energy of solvation -59.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds