Wall clock time and date at job start Mon Mar 30 2020 03:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36938 * 119.99674 * 2 1 4 4 H 1.08006 * 119.99692 * 182.80732 * 3 2 1 5 5 C 1.38813 * 120.00294 * 3.09223 * 3 2 1 6 6 N 1.31618 * 119.99712 * 11.33794 * 5 3 2 7 7 Si 1.86793 * 120.00139 * 191.34392 * 5 3 2 8 8 H 1.48499 * 109.47443 * 89.99463 * 7 5 3 9 9 H 1.48502 * 109.47330 * 209.99599 * 7 5 3 10 10 H 1.48501 * 109.47290 * 329.99653 * 7 5 3 11 11 C 1.46504 * 120.00286 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47238 * 269.25590 * 11 2 1 13 13 C 1.51088 * 110.61411 * 73.68856 * 12 11 2 14 14 C 1.54959 * 104.87904 * 83.59606 * 13 12 11 15 15 C 1.56253 * 105.86839 * 6.44167 * 14 13 12 16 16 C 1.50703 * 101.86323 * 24.97272 * 15 14 13 17 17 H 1.09004 * 108.84477 * 68.01903 * 16 15 14 18 18 O 1.39672 * 127.82471 * 201.28108 * 16 15 14 19 19 C 1.46167 * 103.81569 * 161.64876 * 18 16 15 20 20 C 1.51585 * 110.63010 * 293.54841 * 12 11 2 21 21 H 1.09000 * 109.47031 * 54.45873 * 1 2 3 22 22 H 1.09007 * 109.46751 * 174.45057 * 1 2 3 23 23 H 1.08996 * 109.47492 * 294.44747 * 1 2 3 24 24 H 0.97002 * 119.99932 * 180.02562 * 6 5 3 25 25 H 1.09000 * 109.46795 * 29.25754 * 11 2 1 26 26 H 1.09005 * 109.47056 * 149.25868 * 11 2 1 27 27 H 1.09000 * 110.42048 * 201.70437 * 13 12 11 28 28 H 1.08995 * 110.42679 * 324.18822 * 13 12 11 29 29 H 1.08992 * 109.80926 * 247.53697 * 14 13 12 30 30 H 1.09008 * 110.54788 * 125.73342 * 14 13 12 31 31 H 1.08998 * 110.94797 * 266.82990 * 15 14 13 32 32 H 1.08997 * 110.95085 * 143.12214 * 15 14 13 33 33 H 1.09004 * 110.03143 * 91.25708 * 19 18 16 34 34 H 1.08999 * 110.03729 * 212.64364 * 19 18 16 35 35 H 1.09003 * 110.85671 * 33.55207 * 20 12 11 36 36 H 1.08992 * 110.86215 * 157.20092 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.2287 1.1865 -0.0458 5 6 1.4570 2.3872 0.0648 6 7 0.1720 2.3914 0.3495 7 14 2.3487 3.9977 -0.2520 8 1 2.2827 4.3237 -1.6993 9 1 1.7035 5.0830 0.5297 10 1 3.7690 3.8669 0.1615 11 6 2.1975 -1.2687 -0.0006 12 6 2.4688 -1.7017 1.4416 13 6 1.2021 -2.2057 2.0928 14 6 1.0903 -3.6871 1.6519 15 6 2.4148 -4.0063 0.8869 16 6 3.3652 -2.9976 1.4788 17 1 3.5458 -3.2542 2.5227 18 8 4.5584 -2.5208 0.9313 19 6 4.8144 -1.2874 1.6726 20 6 3.4245 -0.7386 2.1175 21 1 -0.3633 0.5974 -0.8362 22 1 -0.3633 -1.0229 -0.0994 23 1 -0.3634 0.4253 0.9355 24 1 -0.3121 3.2308 0.3945 25 1 1.6027 -2.0314 -0.5032 26 1 3.1442 -1.1415 -0.5258 27 1 1.2846 -2.1507 3.1783 28 1 0.3421 -1.6328 1.7462 29 1 0.2341 -3.8115 0.9889 30 1 0.9916 -4.3384 2.5204 31 1 2.2943 -3.8464 -0.1845 32 1 2.7482 -5.0235 1.0926 33 1 5.4299 -1.4983 2.5471 34 1 5.3146 -0.5626 1.0303 35 1 3.2738 0.2776 1.7532 36 1 3.3185 -0.7832 3.2013 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687526864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:22 Heat of formation + Delta-G solvation = -1.783403 kcal Electronic energy + Delta-G solvation = -17005.376718 eV Core-core repulsion = 14491.041656 eV Total energy + Delta-G solvation = -2514.335062 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.62612 -36.01358 -34.90058 -31.71023 -30.47693 -27.56257 -27.17720 -25.89033 -25.06763 -21.62563 -21.24318 -20.04533 -18.44200 -16.81496 -16.01502 -15.19315 -14.95073 -14.74245 -14.51837 -13.71154 -13.26732 -12.71729 -12.47679 -12.09469 -11.88053 -11.71995 -11.37800 -10.99706 -10.86217 -10.80260 -10.71954 -10.39377 -10.22069 -10.10485 -9.91677 -9.79133 -9.62668 -9.46783 -8.90955 -8.45636 -6.81689 -5.60440 -2.99919 3.40768 3.47051 3.48166 3.87666 4.54223 4.97922 5.09156 5.23087 5.43767 5.48140 5.53440 5.58533 5.69156 5.83050 5.86326 5.91525 6.01729 6.05751 6.11829 6.29298 6.37637 6.42529 6.53324 6.67520 6.72579 6.81336 6.93961 7.00253 7.15098 7.38360 7.65197 7.74997 7.96659 8.42353 9.31992 9.97321 10.40916 11.39455 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034708 B = 0.010051 C = 0.008508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.535478 B = 2785.104871 C = 3290.311733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.606 5.606 3 C -0.238 4.238 4 H 0.074 0.926 5 C -0.008 4.008 6 N -0.916 5.916 7 Si 0.903 3.097 8 H -0.290 1.290 9 H -0.293 1.293 10 H -0.282 1.282 11 C 0.173 3.827 12 C -0.119 4.119 13 C -0.103 4.103 14 C -0.116 4.116 15 C -0.100 4.100 16 C 0.052 3.948 17 H 0.042 0.958 18 O -0.361 6.361 19 C 0.050 3.950 20 C -0.140 4.140 21 H 0.032 0.968 22 H -0.008 1.008 23 H 0.046 0.954 24 H 0.249 0.751 25 H 0.038 0.962 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.514 -9.920 3.357 11.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.329 5.329 3 C -0.367 4.367 4 H 0.092 0.908 5 C -0.204 4.204 6 N -0.564 5.564 7 Si 0.733 3.267 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.207 1.207 11 C 0.045 3.955 12 C -0.122 4.122 13 C -0.141 4.141 14 C -0.154 4.154 15 C -0.138 4.138 16 C -0.007 4.007 17 H 0.059 0.941 18 O -0.280 6.280 19 C -0.026 4.026 20 C -0.177 4.177 21 H 0.051 0.949 22 H 0.010 0.990 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.131 0.869 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.516 -9.847 3.194 10.933 hybrid contribution 0.392 1.068 0.197 1.155 sum 3.908 -8.779 3.391 10.190 Atomic orbital electron populations 1.21004 0.82036 0.92859 1.01560 1.44036 1.02169 1.00575 1.86098 1.19246 0.90846 0.83605 1.42996 0.90820 1.24803 0.96005 0.97625 1.01944 1.70189 1.07455 1.24590 1.54129 0.86263 0.78634 0.83901 0.77853 1.21719 1.21942 1.20723 1.20666 0.95839 0.87700 0.91299 1.22770 0.94362 0.94005 1.01093 1.21468 0.98902 0.94584 0.99145 1.22690 0.96621 0.96758 0.99337 1.21752 0.94007 0.97062 1.00966 1.22500 0.85649 0.96930 0.95651 0.94055 1.88379 1.40224 1.38696 1.60711 1.24020 0.97788 0.85483 0.95290 1.22486 0.92837 1.03183 0.99214 0.94921 0.98956 0.93539 0.94060 0.94329 0.93345 0.92922 0.90077 0.91512 0.92039 0.90511 0.91828 0.92931 0.89837 0.86919 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.21 7.43 59.84 0.44 4.65 16 2 N -0.61 -15.02 2.83 -181.12 -0.51 -15.53 16 3 C -0.24 -6.37 7.79 -15.06 -0.12 -6.49 16 4 H 0.07 1.93 7.34 -52.48 -0.39 1.55 16 5 C -0.01 -0.21 5.36 -17.43 -0.09 -0.30 16 6 N -0.92 -26.42 9.65 55.49 0.54 -25.89 16 7 Si 0.90 21.93 29.57 -169.99 -5.03 16.90 16 8 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.17 3.63 4.18 -4.04 -0.02 3.61 16 12 C -0.12 -2.19 0.77 -153.67 -0.12 -2.31 16 13 C -0.10 -1.76 6.04 -26.66 -0.16 -1.92 16 14 C -0.12 -1.61 6.69 -23.95 -0.16 -1.77 16 15 C -0.10 -1.43 6.31 -26.14 -0.16 -1.60 16 16 C 0.05 0.86 3.14 -25.36 -0.08 0.78 16 17 H 0.04 0.66 7.99 -51.93 -0.41 0.25 16 18 O -0.36 -6.52 10.80 -32.03 -0.35 -6.86 16 19 C 0.05 0.83 7.42 38.71 0.29 1.12 16 20 C -0.14 -2.60 6.26 -25.89 -0.16 -2.76 16 21 H 0.03 0.88 7.25 -51.93 -0.38 0.51 16 22 H -0.01 -0.18 7.16 -51.92 -0.37 -0.55 16 23 H 0.05 1.25 6.91 -51.93 -0.36 0.89 16 24 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.04 0.77 6.22 -51.93 -0.32 0.45 16 26 H 0.05 1.07 7.21 -51.93 -0.37 0.70 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 1.55 5.57 -51.93 -0.29 1.26 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 31 H 0.08 1.13 6.84 -51.93 -0.36 0.78 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.11 2.46 5.10 -51.93 -0.26 2.19 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 268.42 15.07 4.05 4.05 Total: -1.00 -28.72 268.42 -7.25 -35.97 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -5.61 Total: -1.66 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -0.34 Total: -6.98 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.02 Total: -41.42 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.35 Total: -6.86 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.72 -7.25 -35.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687526864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.189 kcal (2) G-P(sol) polarization free energy of solvation -28.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds