Wall clock time and date at job start Mon Mar 30 2020 03:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36938 * 119.99674 * 2 1 4 4 H 1.08006 * 119.99692 * 182.80732 * 3 2 1 5 5 C 1.38813 * 120.00294 * 3.09223 * 3 2 1 6 6 N 1.31618 * 119.99712 * 11.33794 * 5 3 2 7 7 Si 1.86793 * 120.00139 * 191.34392 * 5 3 2 8 8 H 1.48499 * 109.47443 * 89.99463 * 7 5 3 9 9 H 1.48502 * 109.47330 * 209.99599 * 7 5 3 10 10 H 1.48501 * 109.47290 * 329.99653 * 7 5 3 11 11 C 1.46504 * 120.00286 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47238 * 269.25590 * 11 2 1 13 13 C 1.51088 * 110.61411 * 73.68856 * 12 11 2 14 14 C 1.54959 * 104.87904 * 83.59606 * 13 12 11 15 15 C 1.56253 * 105.86839 * 6.44167 * 14 13 12 16 16 C 1.50703 * 101.86323 * 24.97272 * 15 14 13 17 17 H 1.09004 * 108.84477 * 68.01903 * 16 15 14 18 18 O 1.39672 * 127.82471 * 201.28108 * 16 15 14 19 19 C 1.46167 * 103.81569 * 161.64876 * 18 16 15 20 20 C 1.51585 * 110.63010 * 293.54841 * 12 11 2 21 21 H 1.09000 * 109.47031 * 54.45873 * 1 2 3 22 22 H 1.09007 * 109.46751 * 174.45057 * 1 2 3 23 23 H 1.08996 * 109.47492 * 294.44747 * 1 2 3 24 24 H 0.97002 * 119.99932 * 180.02562 * 6 5 3 25 25 H 1.09000 * 109.46795 * 29.25754 * 11 2 1 26 26 H 1.09005 * 109.47056 * 149.25868 * 11 2 1 27 27 H 1.09000 * 110.42048 * 201.70437 * 13 12 11 28 28 H 1.08995 * 110.42679 * 324.18822 * 13 12 11 29 29 H 1.08992 * 109.80926 * 247.53697 * 14 13 12 30 30 H 1.09008 * 110.54788 * 125.73342 * 14 13 12 31 31 H 1.08998 * 110.94797 * 266.82990 * 15 14 13 32 32 H 1.08997 * 110.95085 * 143.12214 * 15 14 13 33 33 H 1.09004 * 110.03143 * 91.25708 * 19 18 16 34 34 H 1.08999 * 110.03729 * 212.64364 * 19 18 16 35 35 H 1.09003 * 110.85671 * 33.55207 * 20 12 11 36 36 H 1.08992 * 110.86215 * 157.20092 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.2287 1.1865 -0.0458 5 6 1.4570 2.3872 0.0648 6 7 0.1720 2.3914 0.3495 7 14 2.3487 3.9977 -0.2520 8 1 2.2827 4.3237 -1.6993 9 1 1.7035 5.0830 0.5297 10 1 3.7690 3.8669 0.1615 11 6 2.1975 -1.2687 -0.0006 12 6 2.4688 -1.7017 1.4416 13 6 1.2021 -2.2057 2.0928 14 6 1.0903 -3.6871 1.6519 15 6 2.4148 -4.0063 0.8869 16 6 3.3652 -2.9976 1.4788 17 1 3.5458 -3.2542 2.5227 18 8 4.5584 -2.5208 0.9313 19 6 4.8144 -1.2874 1.6726 20 6 3.4245 -0.7386 2.1175 21 1 -0.3633 0.5974 -0.8362 22 1 -0.3633 -1.0229 -0.0994 23 1 -0.3634 0.4253 0.9355 24 1 -0.3121 3.2308 0.3945 25 1 1.6027 -2.0314 -0.5032 26 1 3.1442 -1.1415 -0.5258 27 1 1.2846 -2.1507 3.1783 28 1 0.3421 -1.6328 1.7462 29 1 0.2341 -3.8115 0.9889 30 1 0.9916 -4.3384 2.5204 31 1 2.2943 -3.8464 -0.1845 32 1 2.7482 -5.0235 1.0926 33 1 5.4299 -1.4983 2.5471 34 1 5.3146 -0.5626 1.0303 35 1 3.2738 0.2776 1.7532 36 1 3.3185 -0.7832 3.2013 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687526864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:22 Heat of formation + Delta-G solvation = -18.805475 kcal Electronic energy + Delta-G solvation = -17006.114851 eV Core-core repulsion = 14491.041656 eV Total energy + Delta-G solvation = -2515.073195 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.01041 -37.62930 -36.50985 -33.42927 -32.20606 -28.95673 -28.65606 -27.83478 -26.68663 -23.25919 -22.87142 -21.26718 -19.94501 -18.78695 -17.48292 -16.61153 -16.49661 -16.35232 -16.05635 -15.35395 -14.93103 -14.55296 -13.97061 -13.52385 -13.38865 -13.24719 -12.92197 -12.84993 -12.68052 -12.44089 -12.22001 -12.01324 -11.96853 -11.83963 -11.43720 -11.33845 -11.19283 -10.92914 -10.57013 -10.27068 -8.84257 -7.71090 -5.11491 1.45637 1.47788 1.54947 2.49573 2.60793 3.36558 3.65991 3.77305 3.90603 4.03794 4.16539 4.20240 4.43242 4.47230 4.51599 4.57255 4.60059 4.74753 4.83550 4.88758 5.01392 5.03483 5.12507 5.20249 5.25109 5.34536 5.44777 5.50426 5.57978 5.62473 5.67168 5.87332 6.06315 6.34230 7.21693 7.96207 8.34854 9.27548 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034708 B = 0.010051 C = 0.008508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.535478 B = 2785.104871 C = 3290.311733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.618 5.618 3 C -0.234 4.234 4 H 0.075 0.925 5 C -0.064 4.064 6 N -0.945 5.945 7 Si 0.962 3.038 8 H -0.292 1.292 9 H -0.298 1.298 10 H -0.269 1.269 11 C 0.176 3.824 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.107 4.107 15 C -0.099 4.099 16 C 0.060 3.940 17 H 0.055 0.945 18 O -0.377 6.377 19 C 0.054 3.946 20 C -0.143 4.143 21 H 0.001 0.999 22 H 0.021 0.979 23 H 0.020 0.980 24 H 0.242 0.758 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.565 -11.743 3.985 13.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.341 5.341 3 C -0.363 4.363 4 H 0.093 0.907 5 C -0.257 4.257 6 N -0.595 5.595 7 Si 0.791 3.209 8 H -0.219 1.219 9 H -0.225 1.225 10 H -0.194 1.194 11 C 0.050 3.950 12 C -0.130 4.130 13 C -0.144 4.144 14 C -0.144 4.144 15 C -0.136 4.136 16 C 0.000 4.000 17 H 0.073 0.927 18 O -0.296 6.296 19 C -0.022 4.022 20 C -0.180 4.180 21 H 0.020 0.980 22 H 0.040 0.960 23 H 0.039 0.961 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.599 -11.704 3.820 13.142 hybrid contribution 0.098 1.578 0.012 1.581 sum 4.697 -10.125 3.832 11.801 Atomic orbital electron populations 1.20641 0.82278 0.93681 0.98862 1.44224 1.02272 1.01492 1.86114 1.19493 0.91049 0.84499 1.41300 0.90699 1.25500 0.96816 1.00508 1.02865 1.70378 1.08655 1.24617 1.55805 0.85316 0.78161 0.80214 0.77162 1.21945 1.22507 1.19387 1.20704 0.94739 0.86318 0.93233 1.22687 0.95849 0.95492 0.98964 1.21469 0.96874 0.96528 0.99499 1.22661 0.96654 0.94631 1.00476 1.21828 0.93370 0.97997 1.00420 1.22649 0.84606 0.95971 0.96740 0.92722 1.88365 1.40827 1.38998 1.61384 1.24043 0.96847 0.85121 0.96153 1.22421 0.94464 1.01239 0.99888 0.97996 0.96011 0.96145 0.94831 0.93264 0.94805 0.92155 0.92789 0.90887 0.89347 0.91310 0.88969 0.90086 0.90186 0.90642 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.61 7.43 127.77 0.95 10.56 16 2 N -0.62 -30.95 2.83 -726.93 -2.06 -33.01 16 3 C -0.23 -12.70 7.79 84.03 0.65 -12.04 16 4 H 0.08 3.98 7.34 -2.91 -0.02 3.95 16 5 C -0.06 -3.60 5.36 84.86 0.45 -3.15 16 6 N -0.94 -56.09 9.65 21.65 0.21 -55.88 16 7 Si 0.96 45.80 29.57 68.60 2.03 47.83 16 8 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 9 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 C 0.18 7.30 4.18 86.38 0.36 7.66 16 12 C -0.13 -4.49 0.77 -51.64 -0.04 -4.53 16 13 C -0.11 -3.40 6.04 30.64 0.19 -3.22 16 14 C -0.11 -2.57 6.69 32.40 0.22 -2.35 16 15 C -0.10 -2.45 6.31 30.98 0.20 -2.26 16 16 C 0.06 1.79 3.14 31.48 0.10 1.89 16 17 H 0.05 1.53 7.99 -2.38 -0.02 1.51 16 18 O -0.38 -12.69 10.80 -137.52 -1.48 -14.17 16 19 C 0.05 1.70 7.42 72.99 0.54 2.24 16 20 C -0.14 -5.16 6.26 31.14 0.19 -4.96 16 21 H 0.00 0.08 7.25 -2.39 -0.02 0.07 16 22 H 0.02 0.94 7.16 -2.38 -0.02 0.92 16 23 H 0.02 1.13 6.91 -2.39 -0.02 1.11 16 24 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 25 H 0.05 1.91 6.22 -2.39 -0.01 1.90 16 26 H 0.03 1.48 7.21 -2.38 -0.02 1.47 16 27 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 2.02 5.57 -2.39 -0.01 2.01 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.07 1.82 6.84 -2.39 -0.02 1.81 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.08 3.32 5.10 -2.39 -0.01 3.31 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -62.03 268.42 3.55 -58.48 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.05 Total: 6.91 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 3.81 Total: -10.16 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -1.85 Total: -88.89 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -1.48 Total: -14.17 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -62.03 3.55 -58.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687526864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.676 kcal (2) G-P(sol) polarization free energy of solvation -62.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds