Wall clock time and date at job start Mon Mar 30 2020 02:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 110.21405 * 2 1 4 4 C 1.54476 * 110.24575 * 237.97767 * 2 1 3 5 5 H 1.08998 * 110.97382 * 333.70210 * 4 2 1 6 6 C 1.52998 * 110.97012 * 97.46864 * 4 2 1 7 7 C 1.54629 * 101.76082 * 215.58315 * 4 2 1 8 8 C 1.51280 * 104.25899 * 24.58154 * 7 4 2 9 9 O 1.21280 * 124.94459 * 164.01210 * 8 7 4 10 10 N 1.34415 * 110.11155 * 344.14520 * 8 7 4 11 11 C 1.46507 * 124.35043 * 179.43540 * 10 8 7 12 12 C 1.52992 * 109.47485 * 269.70184 * 11 10 8 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47094 * 90.00289 * 18 16 14 20 20 H 1.48505 * 109.47195 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00136 * 18 16 14 22 22 H 1.08997 * 109.47212 * 299.52908 * 1 2 3 23 23 H 1.09007 * 109.46847 * 59.52654 * 1 2 3 24 24 H 1.09003 * 109.46781 * 179.52014 * 1 2 3 25 25 H 1.08998 * 109.47717 * 59.99304 * 6 4 2 26 26 H 1.09000 * 109.47039 * 180.02562 * 6 4 2 27 27 H 1.09009 * 109.46895 * 299.99614 * 6 4 2 28 28 H 1.09005 * 110.48380 * 143.47788 * 7 4 2 29 29 H 1.08996 * 110.48492 * 266.11738 * 7 4 2 30 30 H 1.09002 * 109.47280 * 149.69888 * 11 10 8 31 31 H 1.09001 * 109.46702 * 29.70081 * 11 10 8 32 32 H 1.09002 * 109.47103 * 59.99596 * 12 11 10 33 33 H 1.08998 * 109.46862 * 300.00408 * 12 11 10 34 34 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 35 35 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 36 36 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9067 1.0229 0.0000 4 6 2.0646 -0.7685 -1.2288 5 1 1.3436 -1.5123 -1.5678 6 6 2.4283 0.1942 -2.3610 7 6 3.3288 -1.4462 -0.6512 8 6 3.0561 -1.5394 0.8339 9 8 3.6657 -2.2451 1.6092 10 7 2.0379 -0.7282 1.1686 11 6 1.5073 -0.5848 2.5267 12 6 0.3828 -1.5991 2.7447 13 6 -0.1709 -1.4497 4.1631 14 6 -1.2789 -2.4484 4.3777 15 1 -1.5598 -3.1225 3.5820 16 6 -1.9333 -2.5022 5.5901 17 7 -1.5909 -1.6816 6.5590 18 14 -3.3062 -3.7405 5.8561 19 1 -2.7366 -5.0041 6.3891 20 1 -4.2869 -3.1915 6.8268 21 1 -3.9867 -4.0105 4.5642 22 1 -0.3633 0.5065 0.8941 23 1 -0.3633 0.5212 -0.8858 24 1 -0.3633 -1.0277 -0.0086 25 1 3.1989 0.8844 -2.0177 26 1 2.8015 -0.3726 -3.2140 27 1 1.5431 0.7566 -2.6581 28 1 3.4592 -2.4395 -1.0810 29 1 4.2094 -0.8311 -0.8357 30 1 1.1172 0.4243 2.6597 31 1 2.3038 -0.7645 3.2487 32 1 0.7729 -2.6082 2.6117 33 1 -0.4136 -1.4194 2.0226 34 1 -0.5608 -0.4406 4.2966 35 1 0.6258 -1.6297 4.8849 36 1 -2.0516 -1.7192 7.4119 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687716137.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:23 Heat of formation + Delta-G solvation = -61.058320 kcal Electronic energy + Delta-G solvation = -15761.239869 eV Core-core repulsion = 13244.334453 eV Total energy + Delta-G solvation = -2516.905416 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.45945 -36.77461 -34.94775 -33.03973 -31.12730 -30.54947 -28.19543 -26.25531 -23.51920 -23.04389 -20.85150 -20.23101 -19.14689 -16.58642 -16.44066 -15.71673 -15.07550 -14.49477 -14.23774 -14.10396 -13.70434 -13.51395 -12.78079 -12.64852 -12.38007 -12.21612 -11.96988 -11.80997 -11.70193 -11.26958 -11.05988 -10.80695 -10.69961 -10.67274 -10.52492 -9.71752 -9.56848 -9.34826 -9.13464 -8.32635 -8.30569 -5.97866 -3.99955 2.84182 3.29473 3.33848 3.39754 3.43164 4.30592 4.38251 4.48230 4.55904 4.96692 5.19290 5.22485 5.30248 5.37946 5.43099 5.52008 5.59992 5.68272 5.77887 5.83993 5.85485 6.00352 6.08798 6.20159 6.27997 6.55440 6.67669 7.03304 7.13601 7.46054 7.68498 7.83706 8.01644 8.42596 8.48496 9.06519 9.63859 11.13546 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041635 B = 0.005658 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.353822 B = 4947.739918 C = 5176.195203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.077 0.923 4 C -0.102 4.102 5 H 0.091 0.909 6 C -0.140 4.140 7 C -0.152 4.152 8 C 0.511 3.489 9 O -0.536 6.536 10 N -0.610 5.610 11 C 0.123 3.877 12 C -0.125 4.125 13 C 0.023 3.977 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.016 0.984 35 H 0.017 0.983 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.254 5.831 -17.499 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.028 3.972 3 H 0.095 0.905 4 C -0.121 4.121 5 H 0.110 0.890 6 C -0.197 4.197 7 C -0.192 4.192 8 C 0.298 3.702 9 O -0.413 6.413 10 N -0.344 5.344 11 C 0.003 3.997 12 C -0.164 4.164 13 C -0.014 4.014 14 C -0.556 4.556 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.498 5.529 -16.818 18.859 hybrid contribution -0.863 -0.633 0.304 1.113 sum 5.635 4.896 -16.515 18.123 Atomic orbital electron populations 1.22181 0.93789 1.03308 1.02611 1.21754 0.95364 0.95549 0.84572 0.90517 1.22251 0.96931 0.98149 0.94783 0.89030 1.21758 1.01778 0.98766 0.97424 1.22462 0.99313 1.03523 0.93921 1.20816 0.79679 0.79172 0.90507 1.90725 1.52453 1.40872 1.57219 1.48581 1.34053 1.42641 1.09106 1.21663 0.97653 1.00319 0.80105 1.22086 0.95727 0.97502 1.01066 1.19046 0.95711 0.97131 0.89546 1.21217 1.17590 1.18474 0.98368 0.92796 1.25016 0.97364 0.95927 0.96125 1.69964 1.41912 1.37573 1.04073 0.86597 0.81931 0.81540 0.77952 1.20649 1.21220 1.19926 0.91314 0.91630 0.91477 0.92278 0.92014 0.91967 0.88411 0.88216 0.90937 0.90474 0.93153 0.92748 0.96561 0.96473 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 7.86 37.16 0.29 -1.53 16 2 C 0.13 1.49 3.48 -67.01 -0.23 1.25 16 3 H 0.08 0.77 7.89 -51.93 -0.41 0.36 16 4 C -0.10 -0.94 3.26 -88.99 -0.29 -1.23 16 5 H 0.09 0.83 7.91 -51.93 -0.41 0.42 16 6 C -0.14 -0.91 9.14 37.16 0.34 -0.57 16 7 C -0.15 -1.67 6.42 -26.74 -0.17 -1.84 16 8 C 0.51 8.43 8.02 -10.86 -0.09 8.34 16 9 O -0.54 -11.33 17.59 5.56 0.10 -11.23 16 10 N -0.61 -9.47 2.79 -164.89 -0.46 -9.93 16 11 C 0.12 2.23 5.22 -4.04 -0.02 2.21 16 12 C -0.13 -2.69 5.33 -26.74 -0.14 -2.83 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 18 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H 0.07 0.87 7.34 -51.93 -0.38 0.49 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.85 7.40 -51.93 -0.38 0.47 16 25 H 0.06 0.37 8.06 -51.93 -0.42 -0.05 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.10 0.92 7.84 -51.93 -0.41 0.52 16 30 H 0.07 1.19 7.91 -51.93 -0.41 0.78 16 31 H 0.08 1.52 7.92 -51.93 -0.41 1.11 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.10 5.97 -51.93 -0.31 0.79 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 294.06 15.07 4.43 4.43 Total: -1.00 -33.37 294.06 -7.12 -40.50 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -6.04 Total: -4.71 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -0.86 Total: -9.50 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.28 Total: -36.52 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.10 Total: -11.23 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.37 -7.12 -40.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687716137.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.561 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds