Wall clock time and date at job start Mon Mar 30 2020 02:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 110.21405 * 2 1 4 4 C 1.54476 * 110.24575 * 237.97767 * 2 1 3 5 5 H 1.08998 * 110.97382 * 333.70210 * 4 2 1 6 6 C 1.52998 * 110.97012 * 97.46864 * 4 2 1 7 7 C 1.54629 * 101.76082 * 215.58315 * 4 2 1 8 8 C 1.51280 * 104.25899 * 24.58154 * 7 4 2 9 9 O 1.21280 * 124.94459 * 164.01210 * 8 7 4 10 10 N 1.34415 * 110.11155 * 344.14520 * 8 7 4 11 11 C 1.46507 * 124.35043 * 179.43540 * 10 8 7 12 12 C 1.52992 * 109.47485 * 269.70184 * 11 10 8 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47094 * 90.00289 * 18 16 14 20 20 H 1.48505 * 109.47195 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00136 * 18 16 14 22 22 H 1.08997 * 109.47212 * 299.52908 * 1 2 3 23 23 H 1.09007 * 109.46847 * 59.52654 * 1 2 3 24 24 H 1.09003 * 109.46781 * 179.52014 * 1 2 3 25 25 H 1.08998 * 109.47717 * 59.99304 * 6 4 2 26 26 H 1.09000 * 109.47039 * 180.02562 * 6 4 2 27 27 H 1.09009 * 109.46895 * 299.99614 * 6 4 2 28 28 H 1.09005 * 110.48380 * 143.47788 * 7 4 2 29 29 H 1.08996 * 110.48492 * 266.11738 * 7 4 2 30 30 H 1.09002 * 109.47280 * 149.69888 * 11 10 8 31 31 H 1.09001 * 109.46702 * 29.70081 * 11 10 8 32 32 H 1.09002 * 109.47103 * 59.99596 * 12 11 10 33 33 H 1.08998 * 109.46862 * 300.00408 * 12 11 10 34 34 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 35 35 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 36 36 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9067 1.0229 0.0000 4 6 2.0646 -0.7685 -1.2288 5 1 1.3436 -1.5123 -1.5678 6 6 2.4283 0.1942 -2.3610 7 6 3.3288 -1.4462 -0.6512 8 6 3.0561 -1.5394 0.8339 9 8 3.6657 -2.2451 1.6092 10 7 2.0379 -0.7282 1.1686 11 6 1.5073 -0.5848 2.5267 12 6 0.3828 -1.5991 2.7447 13 6 -0.1709 -1.4497 4.1631 14 6 -1.2789 -2.4484 4.3777 15 1 -1.5598 -3.1225 3.5820 16 6 -1.9333 -2.5022 5.5901 17 7 -1.5909 -1.6816 6.5590 18 14 -3.3062 -3.7405 5.8561 19 1 -2.7366 -5.0041 6.3891 20 1 -4.2869 -3.1915 6.8268 21 1 -3.9867 -4.0105 4.5642 22 1 -0.3633 0.5065 0.8941 23 1 -0.3633 0.5212 -0.8858 24 1 -0.3633 -1.0277 -0.0086 25 1 3.1989 0.8844 -2.0177 26 1 2.8015 -0.3726 -3.2140 27 1 1.5431 0.7566 -2.6581 28 1 3.4592 -2.4395 -1.0810 29 1 4.2094 -0.8311 -0.8357 30 1 1.1172 0.4243 2.6597 31 1 2.3038 -0.7645 3.2487 32 1 0.7729 -2.6082 2.6117 33 1 -0.4136 -1.4194 2.0226 34 1 -0.5608 -0.4406 4.2966 35 1 0.6258 -1.6297 4.8849 36 1 -2.0516 -1.7192 7.4119 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687716137.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:23 Heat of formation + Delta-G solvation = -82.163538 kcal Electronic energy + Delta-G solvation = -15762.155060 eV Core-core repulsion = 13244.334453 eV Total energy + Delta-G solvation = -2517.820607 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.61389 -38.05139 -36.57480 -34.83219 -32.80330 -31.55498 -29.42463 -27.78364 -25.13804 -24.18415 -22.29260 -21.57035 -20.39255 -18.53166 -17.69825 -17.15687 -16.52884 -16.35593 -15.53010 -15.09941 -14.91298 -14.74137 -14.42469 -13.99382 -13.48064 -13.36951 -13.18793 -13.11988 -12.92785 -12.70434 -12.53574 -12.45405 -12.30686 -11.79171 -11.62597 -11.56864 -11.35797 -11.29634 -10.74586 -10.58525 -9.67808 -8.22865 -6.34524 1.37506 1.39610 1.50406 1.56921 2.08195 2.39285 3.10009 3.39396 3.49897 3.80931 4.05808 4.12246 4.27054 4.36019 4.49332 4.54805 4.60468 4.70501 4.79752 4.82470 4.85383 4.95599 5.09617 5.12931 5.15597 5.25223 5.37679 5.46972 5.50626 5.64059 5.68148 5.79984 6.20815 6.25570 6.80692 7.17523 7.34625 8.88962 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041635 B = 0.005658 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.353822 B = 4947.739918 C = 5176.195203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.124 3.876 3 H 0.099 0.901 4 C -0.090 4.090 5 H 0.094 0.906 6 C -0.134 4.134 7 C -0.140 4.140 8 C 0.494 3.506 9 O -0.596 6.596 10 N -0.613 5.613 11 C 0.132 3.868 12 C -0.105 4.105 13 C 0.028 3.972 14 C -0.545 4.545 15 H 0.055 0.945 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.966 3.034 19 H -0.275 1.275 20 H -0.277 1.277 21 H -0.262 1.262 22 H 0.051 0.949 23 H 0.099 0.901 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.026 0.974 33 H 0.068 0.932 34 H 0.004 0.996 35 H -0.016 1.016 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.481 6.318 -20.055 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.022 3.978 3 H 0.117 0.883 4 C -0.109 4.109 5 H 0.113 0.887 6 C -0.191 4.191 7 C -0.180 4.180 8 C 0.284 3.716 9 O -0.477 6.477 10 N -0.345 5.345 11 C 0.010 3.990 12 C -0.144 4.144 13 C -0.010 4.010 14 C -0.583 4.583 15 H 0.074 0.926 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.790 3.210 19 H -0.201 1.201 20 H -0.202 1.202 21 H -0.186 1.186 22 H 0.070 0.930 23 H 0.118 0.882 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.126 0.874 29 H 0.141 0.859 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.023 0.977 35 H 0.003 0.997 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.712 6.045 -19.423 21.129 hybrid contribution -0.614 -0.748 1.113 1.475 sum 5.098 5.297 -18.310 19.730 Atomic orbital electron populations 1.22173 0.93691 1.02407 1.03444 1.22153 0.95474 0.96495 0.83660 0.88292 1.22278 0.95678 0.98394 0.94523 0.88726 1.21750 1.02616 0.98330 0.96449 1.22500 1.01215 1.04989 0.89266 1.21913 0.79010 0.78002 0.92720 1.90682 1.54452 1.43219 1.59361 1.48717 1.33838 1.42814 1.09099 1.21298 0.95751 1.00114 0.81838 1.21811 0.97038 0.97228 0.98315 1.18930 0.94374 0.95962 0.91733 1.21626 1.18538 1.19208 0.98927 0.92628 1.25975 1.00067 0.97955 0.95668 1.70090 1.43241 1.39204 1.04636 0.85437 0.78505 0.78632 0.78421 1.20108 1.20236 1.18611 0.93024 0.88230 0.93233 0.91647 0.90671 0.90730 0.87370 0.85850 0.88966 0.92905 0.95527 0.91308 0.97733 0.99725 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 7.86 71.98 0.57 -2.68 16 2 C 0.12 2.50 3.48 45.45 0.16 2.66 16 3 H 0.10 1.62 7.89 -2.38 -0.02 1.60 16 4 C -0.09 -1.34 3.26 -9.74 -0.03 -1.38 16 5 H 0.09 1.40 7.91 -2.39 -0.02 1.38 16 6 C -0.13 -1.12 9.14 71.98 0.66 -0.47 16 7 C -0.14 -2.75 6.42 30.59 0.20 -2.55 16 8 C 0.49 16.27 8.02 87.90 0.71 16.98 16 9 O -0.60 -26.22 17.59 -3.03 -0.05 -26.27 16 10 N -0.61 -18.76 2.79 -794.17 -2.22 -20.98 16 11 C 0.13 4.92 5.22 86.38 0.45 5.37 16 12 C -0.11 -4.68 5.33 30.59 0.16 -4.51 16 13 C 0.03 1.52 4.97 29.85 0.15 1.67 16 14 C -0.55 -32.30 9.11 25.60 0.23 -32.06 16 15 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 16 C 0.00 0.08 5.46 84.66 0.46 0.54 16 17 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 18 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 22 H 0.05 1.23 7.34 -2.39 -0.02 1.21 16 23 H 0.10 1.35 8.14 -2.38 -0.02 1.34 16 24 H 0.05 1.18 7.40 -2.39 -0.02 1.16 16 25 H 0.06 0.51 8.06 -2.39 -0.02 0.49 16 26 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.49 8.14 -2.38 -0.02 0.48 16 28 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.12 1.88 7.84 -2.39 -0.02 1.86 16 30 H 0.09 3.04 7.91 -2.39 -0.02 3.02 16 31 H 0.05 2.21 7.92 -2.39 -0.02 2.19 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 2.82 5.97 -2.39 -0.01 2.81 16 34 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 35 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 36 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -75.23 294.06 4.78 -70.45 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: 1.03 Total: 3.47 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 3.71 Total: -16.43 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -1.93 Total: -78.58 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.05 Total: -26.27 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -75.23 4.78 -70.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687716137.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.711 kcal (2) G-P(sol) polarization free energy of solvation -75.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds