Wall clock time and date at job start Mon Mar 30 2020 02:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.43545 * 2 1 4 4 C 1.54633 * 110.49101 * 122.68023 * 2 1 3 5 5 C 1.54306 * 101.84262 * 143.25822 * 4 2 1 6 6 C 1.53000 * 110.31059 * 215.85147 * 5 4 2 7 7 C 1.52996 * 110.08844 * 93.91487 * 5 4 2 8 8 N 1.46762 * 105.56671 * 334.94094 * 5 4 2 9 9 C 1.46499 * 124.34754 * 196.88593 * 8 5 4 10 10 C 1.53000 * 109.46840 * 269.72168 * 9 8 5 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46999 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46942 * 119.99666 * 15 13 11 18 18 H 1.48504 * 109.46979 * 239.99580 * 15 13 11 19 19 C 1.34417 * 111.30088 * 16.61765 * 8 5 4 20 20 O 1.21275 * 124.94537 * 179.83882 * 19 8 5 21 21 H 1.08997 * 109.46512 * 181.09362 * 1 2 3 22 22 H 1.09002 * 109.46810 * 301.08582 * 1 2 3 23 23 H 1.08994 * 109.47379 * 61.08633 * 1 2 3 24 24 H 1.08990 * 110.97236 * 261.59619 * 4 2 1 25 25 H 1.09003 * 110.96430 * 25.32448 * 4 2 1 26 26 H 1.08997 * 109.47294 * 177.65446 * 6 5 4 27 27 H 1.08999 * 109.47062 * 297.65314 * 6 5 4 28 28 H 1.08997 * 109.46977 * 57.65090 * 6 5 4 29 29 H 1.08999 * 109.47185 * 302.47125 * 7 5 4 30 30 H 1.08999 * 109.47554 * 62.47561 * 7 5 4 31 31 H 1.09005 * 109.47246 * 182.47720 * 7 5 4 32 32 H 1.09001 * 109.46813 * 149.72442 * 9 8 5 33 33 H 1.08992 * 109.47397 * 29.72504 * 9 8 5 34 34 H 1.09002 * 109.47398 * 300.00326 * 10 9 8 35 35 H 1.09001 * 109.47194 * 60.00507 * 10 9 8 36 36 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0713 -0.7821 1.2192 5 6 3.3158 -1.4739 0.6245 6 6 3.4925 -2.8656 1.2352 7 6 4.5614 -0.6220 0.8765 8 7 3.0564 -1.5807 -0.8161 9 6 3.7860 -2.4696 -1.7237 10 6 4.9979 -1.7313 -2.2956 11 6 5.7481 -2.6455 -3.2298 12 1 5.3954 -3.6521 -3.3989 13 6 6.8846 -2.1967 -3.8684 14 7 7.3137 -0.9706 -3.6629 15 14 7.8141 -3.3296 -5.0269 16 1 7.1303 -4.6465 -5.0858 17 1 7.8495 -2.7286 -6.3844 18 1 9.2016 -3.5145 -4.5310 19 6 2.0595 -0.7623 -1.1947 20 8 1.6450 -0.6509 -2.3290 21 1 -0.3632 -1.0275 0.0196 22 1 -0.3633 0.5306 0.8801 23 1 -0.3634 0.4968 -0.8995 24 1 2.3472 -0.1039 2.0265 25 1 1.3460 -1.5197 1.5627 26 1 4.3498 -3.3577 0.7760 27 1 3.6586 -2.7729 2.3085 28 1 2.5949 -3.4575 1.0563 29 1 4.4177 0.3683 0.4445 30 1 4.7274 -0.5297 1.9498 31 1 5.4265 -1.0978 0.4147 32 1 3.1293 -2.7757 -2.5381 33 1 4.1219 -3.3507 -1.1772 34 1 4.6619 -0.8501 -2.8422 35 1 5.6545 -1.4252 -1.4812 36 1 8.1135 -0.6550 -4.1119 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687795526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:14 Heat of formation + Delta-G solvation = -55.497870 kcal Electronic energy + Delta-G solvation = -16278.100744 eV Core-core repulsion = 13761.436448 eV Total energy + Delta-G solvation = -2516.664296 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.46128 -36.62445 -34.39068 -32.79944 -31.70377 -29.51858 -27.35018 -26.65643 -24.76704 -22.95168 -21.05057 -20.29807 -18.25493 -16.46536 -16.12692 -15.48052 -14.77359 -14.42336 -14.09039 -13.75904 -13.35273 -13.20386 -12.56604 -12.42935 -12.27953 -12.14701 -11.97149 -11.68304 -11.56340 -11.34866 -11.15178 -10.94204 -10.73768 -10.62719 -10.34168 -9.88343 -9.81806 -9.25132 -9.00523 -8.34737 -7.96783 -6.00681 -4.03693 3.15319 3.31353 3.38584 3.42472 3.59314 4.46791 4.51116 4.58002 4.80315 5.15146 5.24862 5.35502 5.38817 5.43899 5.61212 5.73738 5.81057 5.82725 5.95866 6.00137 6.05159 6.12970 6.15515 6.23597 6.30089 6.51124 6.62097 6.87498 7.13244 7.61762 7.71866 7.93515 8.00794 8.36972 8.78794 9.03707 9.60146 11.10697 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037811 B = 0.007185 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.338091 B = 3896.112106 C = 4176.533731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 H 0.103 0.897 4 C -0.119 4.119 5 C 0.152 3.848 6 C -0.152 4.152 7 C -0.157 4.157 8 N -0.600 5.600 9 C 0.126 3.874 10 C 0.011 3.989 11 C -0.521 4.521 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.514 3.486 20 O -0.536 6.536 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.019 0.981 35 H 0.022 0.978 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.098 0.001 13.209 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.150 4.150 3 H 0.121 0.879 4 C -0.157 4.157 5 C 0.067 3.933 6 C -0.210 4.210 7 C -0.215 4.215 8 N -0.333 5.333 9 C 0.006 3.994 10 C -0.027 4.027 11 C -0.560 4.560 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.301 3.699 20 O -0.413 6.413 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.128 0.105 12.499 15.477 hybrid contribution 0.787 -0.480 -0.683 1.147 sum -8.340 -0.375 11.816 14.468 Atomic orbital electron populations 1.21589 0.92779 1.02203 1.02265 1.21962 0.97747 1.00701 0.94602 0.87893 1.22771 0.96547 0.99301 0.97036 1.20948 0.95208 0.96026 0.81137 1.22069 1.02761 0.95568 1.00571 1.22235 0.97958 1.00198 1.01082 1.48615 1.34815 1.41565 1.08281 1.21785 0.94808 0.91785 0.91032 1.19469 0.91101 0.96157 0.95952 1.21150 1.09554 0.99060 1.26209 0.92525 1.24996 0.97391 0.95103 0.96782 1.69984 1.23790 1.16105 1.43307 0.86515 0.79614 0.80941 0.80808 1.19685 1.20967 1.21016 1.20670 0.79826 0.80083 0.89339 1.90683 1.62162 1.66531 1.21915 0.92573 0.92078 0.91682 0.89591 0.90199 0.91301 0.91551 0.92327 0.92341 0.92105 0.90735 0.91399 0.91587 0.96262 0.96004 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.08 37.16 0.34 -1.19 16 2 C -0.13 -1.76 3.53 -90.63 -0.32 -2.08 16 3 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.12 -1.33 5.72 -25.19 -0.14 -1.47 16 5 C 0.15 2.16 1.00 -130.99 -0.13 2.03 16 6 C -0.15 -1.86 8.10 37.16 0.30 -1.56 16 7 C -0.16 -2.26 8.60 37.16 0.32 -1.94 16 8 N -0.60 -11.19 2.42 -157.77 -0.38 -11.57 16 9 C 0.13 2.74 5.65 -4.04 -0.02 2.71 16 10 C 0.01 0.29 5.27 -27.88 -0.15 0.14 16 11 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 15 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 C 0.51 9.94 7.45 -10.86 -0.08 9.86 16 20 O -0.54 -12.68 17.44 5.56 0.10 -12.58 16 21 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.09 0.77 7.89 -51.93 -0.41 0.36 16 25 H 0.08 0.79 7.65 -51.93 -0.40 0.39 16 26 H 0.07 0.94 6.95 -51.93 -0.36 0.58 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.28 6.48 -51.93 -0.34 0.95 16 32 H 0.07 1.57 7.93 -51.93 -0.41 1.16 16 33 H 0.07 1.31 6.42 -51.93 -0.33 0.97 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.02 0.59 6.30 -51.93 -0.33 0.26 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 291.90 15.07 4.40 4.40 Total: -1.00 -33.18 291.90 -6.39 -39.57 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -5.92 Total: -3.09 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -0.30 Total: -7.13 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.35 Total: -38.05 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.10 Total: -12.58 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.18 -6.39 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687795526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.926 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds