Wall clock time and date at job start Mon Mar 30 2020 02:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.43545 * 2 1 4 4 C 1.54633 * 110.49101 * 122.68023 * 2 1 3 5 5 C 1.54306 * 101.84262 * 143.25822 * 4 2 1 6 6 C 1.53000 * 110.31059 * 215.85147 * 5 4 2 7 7 C 1.52996 * 110.08844 * 93.91487 * 5 4 2 8 8 N 1.46762 * 105.56671 * 334.94094 * 5 4 2 9 9 C 1.46499 * 124.34754 * 196.88593 * 8 5 4 10 10 C 1.53000 * 109.46840 * 269.72168 * 9 8 5 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46999 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46942 * 119.99666 * 15 13 11 18 18 H 1.48504 * 109.46979 * 239.99580 * 15 13 11 19 19 C 1.34417 * 111.30088 * 16.61765 * 8 5 4 20 20 O 1.21275 * 124.94537 * 179.83882 * 19 8 5 21 21 H 1.08997 * 109.46512 * 181.09362 * 1 2 3 22 22 H 1.09002 * 109.46810 * 301.08582 * 1 2 3 23 23 H 1.08994 * 109.47379 * 61.08633 * 1 2 3 24 24 H 1.08990 * 110.97236 * 261.59619 * 4 2 1 25 25 H 1.09003 * 110.96430 * 25.32448 * 4 2 1 26 26 H 1.08997 * 109.47294 * 177.65446 * 6 5 4 27 27 H 1.08999 * 109.47062 * 297.65314 * 6 5 4 28 28 H 1.08997 * 109.46977 * 57.65090 * 6 5 4 29 29 H 1.08999 * 109.47185 * 302.47125 * 7 5 4 30 30 H 1.08999 * 109.47554 * 62.47561 * 7 5 4 31 31 H 1.09005 * 109.47246 * 182.47720 * 7 5 4 32 32 H 1.09001 * 109.46813 * 149.72442 * 9 8 5 33 33 H 1.08992 * 109.47397 * 29.72504 * 9 8 5 34 34 H 1.09002 * 109.47398 * 300.00326 * 10 9 8 35 35 H 1.09001 * 109.47194 * 60.00507 * 10 9 8 36 36 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0713 -0.7821 1.2192 5 6 3.3158 -1.4739 0.6245 6 6 3.4925 -2.8656 1.2352 7 6 4.5614 -0.6220 0.8765 8 7 3.0564 -1.5807 -0.8161 9 6 3.7860 -2.4696 -1.7237 10 6 4.9979 -1.7313 -2.2956 11 6 5.7481 -2.6455 -3.2298 12 1 5.3954 -3.6521 -3.3989 13 6 6.8846 -2.1967 -3.8684 14 7 7.3137 -0.9706 -3.6629 15 14 7.8141 -3.3296 -5.0269 16 1 7.1303 -4.6465 -5.0858 17 1 7.8495 -2.7286 -6.3844 18 1 9.2016 -3.5145 -4.5310 19 6 2.0595 -0.7623 -1.1947 20 8 1.6450 -0.6509 -2.3290 21 1 -0.3632 -1.0275 0.0196 22 1 -0.3633 0.5306 0.8801 23 1 -0.3634 0.4968 -0.8995 24 1 2.3472 -0.1039 2.0265 25 1 1.3460 -1.5197 1.5627 26 1 4.3498 -3.3577 0.7760 27 1 3.6586 -2.7729 2.3085 28 1 2.5949 -3.4575 1.0563 29 1 4.4177 0.3683 0.4445 30 1 4.7274 -0.5297 1.9498 31 1 5.4265 -1.0978 0.4147 32 1 3.1293 -2.7757 -2.5381 33 1 4.1219 -3.3507 -1.1772 34 1 4.6619 -0.8501 -2.8422 35 1 5.6545 -1.4252 -1.4812 36 1 8.1135 -0.6550 -4.1119 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687795526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:14 Heat of formation + Delta-G solvation = -77.041142 kcal Electronic energy + Delta-G solvation = -16279.034931 eV Core-core repulsion = 13761.436448 eV Total energy + Delta-G solvation = -2517.598483 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.80611 -38.12747 -36.12557 -34.55693 -33.12382 -31.33331 -28.47494 -27.85563 -26.52745 -24.34831 -22.88086 -21.55352 -19.69765 -18.56730 -17.38035 -17.12730 -16.61197 -16.01136 -15.42265 -14.98485 -14.71113 -14.52361 -14.38381 -13.98718 -13.76061 -13.40025 -13.13410 -12.97944 -12.88356 -12.70122 -12.61732 -12.50715 -12.33438 -12.00053 -11.81832 -11.65070 -11.45005 -11.28993 -10.63836 -10.58002 -9.57960 -8.25471 -6.38292 1.36593 1.38381 1.51485 1.65411 2.14974 2.40029 3.07772 3.34022 3.53684 3.83803 4.09562 4.16262 4.26984 4.34654 4.47639 4.61627 4.75133 4.77277 4.82839 4.87139 4.88155 4.93908 5.00528 5.14330 5.14505 5.23747 5.31510 5.41321 5.42228 5.53676 5.67033 5.84296 6.15074 6.39020 6.77348 7.26867 7.31703 8.86841 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037811 B = 0.007185 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.338091 B = 3896.112106 C = 4176.533731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 H 0.111 0.889 4 C -0.101 4.101 5 C 0.140 3.860 6 C -0.148 4.148 7 C -0.153 4.153 8 N -0.606 5.606 9 C 0.140 3.860 10 C 0.025 3.975 11 C -0.546 4.546 12 H 0.064 0.936 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.970 3.030 16 H -0.260 1.260 17 H -0.281 1.281 18 H -0.272 1.272 19 C 0.493 3.507 20 O -0.595 6.595 21 H 0.056 0.944 22 H 0.100 0.900 23 H 0.044 0.956 24 H 0.124 0.876 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.103 0.897 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.088 0.912 34 H -0.033 1.033 35 H 0.010 0.990 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.564 -0.885 15.698 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 H 0.129 0.871 4 C -0.138 4.138 5 C 0.056 3.944 6 C -0.205 4.205 7 C -0.211 4.211 8 N -0.337 5.337 9 C 0.018 3.982 10 C -0.013 4.013 11 C -0.584 4.584 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.794 3.206 16 H -0.183 1.183 17 H -0.207 1.207 18 H -0.197 1.197 19 C 0.282 3.718 20 O -0.477 6.477 21 H 0.075 0.925 22 H 0.119 0.881 23 H 0.063 0.937 24 H 0.142 0.858 25 H 0.122 0.878 26 H 0.065 0.935 27 H 0.121 0.879 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.106 0.894 34 H -0.014 1.014 35 H 0.028 0.972 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.596 -0.788 15.043 17.861 hybrid contribution 0.954 -0.154 -1.447 1.739 sum -8.643 -0.942 13.597 16.138 Atomic orbital electron populations 1.21601 0.90965 1.02648 1.03140 1.22028 0.99123 1.00359 0.92695 0.87126 1.22846 0.94885 0.99742 0.96333 1.21415 0.96691 0.97855 0.78455 1.22065 1.02158 0.93848 1.02443 1.22218 0.96653 0.98890 1.03361 1.48783 1.34071 1.40675 1.10187 1.21317 0.92733 0.92529 0.91574 1.19258 0.92676 0.94445 0.94890 1.21593 1.10176 0.99693 1.26932 0.91803 1.26016 0.98401 0.96784 0.98522 1.70124 1.24445 1.18174 1.44485 0.85322 0.78351 0.78934 0.77967 1.18334 1.20715 1.19709 1.21898 0.79561 0.80037 0.90277 1.90630 1.63974 1.68267 1.24788 0.92508 0.88147 0.93686 0.85816 0.87784 0.93469 0.87863 0.91638 0.93875 0.87810 0.94524 0.93590 0.89366 1.01440 0.97194 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.08 71.98 0.65 -1.98 16 2 C -0.12 -3.08 3.53 -10.80 -0.04 -3.12 16 3 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 4 C -0.10 -1.82 5.72 31.59 0.18 -1.64 16 5 C 0.14 3.67 1.00 4.00 0.00 3.67 16 6 C -0.15 -3.18 8.10 71.98 0.58 -2.59 16 7 C -0.15 -4.23 8.60 71.98 0.62 -3.61 16 8 N -0.61 -22.96 2.42 -771.64 -1.87 -24.83 16 9 C 0.14 6.36 5.65 86.38 0.49 6.85 16 10 C 0.03 1.42 5.27 29.85 0.16 1.57 16 11 C -0.55 -32.31 9.11 25.60 0.23 -32.07 16 12 H 0.06 3.59 7.74 -2.91 -0.02 3.57 16 13 C 0.00 0.04 5.46 84.65 0.46 0.51 16 14 N -0.93 -58.65 13.29 21.45 0.28 -58.36 16 15 Si 0.97 45.44 29.54 68.60 2.03 47.46 16 16 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 C 0.49 19.53 7.45 87.90 0.65 20.18 16 20 O -0.60 -29.86 17.44 -3.01 -0.05 -29.91 16 21 H 0.06 1.18 8.12 -2.39 -0.02 1.16 16 22 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.12 1.42 7.89 -2.39 -0.02 1.40 16 25 H 0.10 1.47 7.65 -2.39 -0.02 1.45 16 26 H 0.05 1.22 6.95 -2.39 -0.02 1.20 16 27 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.28 6.48 -2.38 -0.02 1.26 16 32 H 0.05 2.25 7.93 -2.39 -0.02 2.23 16 33 H 0.09 3.56 6.42 -2.39 -0.02 3.55 16 34 H -0.03 -2.16 8.14 -2.39 -0.02 -2.18 16 35 H 0.01 0.57 6.30 -2.39 -0.02 0.55 16 36 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -77.87 291.90 5.42 -72.45 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.03 Total: 5.42 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 4.00 Total: -12.22 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -1.59 Total: -83.20 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.05 Total: -29.91 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -77.87 5.42 -72.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687795526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.593 kcal (2) G-P(sol) polarization free energy of solvation -77.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds