Wall clock time and date at job start Mon Mar 30 2020 03:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46930 * 2 1 4 4 C 1.50696 * 109.47227 * 240.00512 * 2 1 3 5 5 H 1.08007 * 119.99801 * 239.99778 * 4 2 1 6 6 C 1.37876 * 120.00307 * 60.00070 * 4 2 1 7 7 N 1.31513 * 120.00111 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00081 * 180.27859 * 6 4 2 9 9 H 1.48503 * 109.47133 * 179.72118 * 8 6 4 10 10 H 1.48501 * 109.47469 * 299.72120 * 8 6 4 11 11 H 1.48505 * 109.47244 * 59.72304 * 8 6 4 12 12 N 1.46902 * 109.47003 * 119.99924 * 2 1 3 13 13 C 1.46899 * 110.99842 * 205.93078 * 12 2 1 14 14 H 1.09001 * 110.45679 * 328.17603 * 13 12 2 15 15 C 1.54537 * 110.50921 * 90.77904 * 13 12 2 16 16 O 1.44974 * 104.83746 * 95.02135 * 15 13 12 17 17 C 1.43344 * 105.25450 * 39.18370 * 16 15 13 18 18 C 1.52814 * 115.70629 * 90.37723 * 17 16 15 19 19 C 1.53958 * 86.78850 * 92.86227 * 18 17 16 20 20 C 1.52807 * 115.72125 * 191.36180 * 17 16 15 21 21 C 1.53559 * 106.13014 * 320.88925 * 17 16 15 22 22 H 1.09000 * 109.47186 * 294.03089 * 1 2 3 23 23 H 1.09007 * 109.47152 * 54.02547 * 1 2 3 24 24 H 1.08999 * 109.47186 * 174.02826 * 1 2 3 25 25 H 0.96993 * 120.00153 * 180.02562 * 7 6 4 26 26 H 1.00893 * 111.00284 * 329.88556 * 12 2 1 27 27 H 1.09003 * 110.33565 * 213.86981 * 15 13 12 28 28 H 1.09007 * 110.33407 * 336.10192 * 15 13 12 29 29 H 1.08996 * 113.66143 * 207.33820 * 18 17 16 30 30 H 1.09004 * 113.65908 * 338.38642 * 18 17 16 31 31 H 1.09003 * 113.58613 * 270.12571 * 19 18 17 32 32 H 1.09003 * 113.65526 * 139.32089 * 19 18 17 33 33 H 1.09003 * 113.66133 * 21.62680 * 20 17 16 34 34 H 1.09005 * 113.65846 * 152.67830 * 20 17 16 35 35 H 1.09003 * 110.57049 * 264.26183 * 21 17 16 36 36 H 1.08994 * 110.69472 * 141.45071 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3156 -1.1242 -4.0079 9 1 1.8161 -0.4272 -5.2204 10 1 3.8006 -1.1249 -4.0138 11 1 1.8199 -2.5240 -4.0022 12 7 2.0196 -0.6925 1.1995 13 6 3.3579 -0.2157 1.5731 14 1 3.9206 0.0740 0.6857 15 6 3.2546 0.9693 2.5596 16 8 3.3703 0.3692 3.8742 17 6 4.3645 -0.6540 3.7355 18 6 5.8042 -0.2207 4.0087 19 6 5.5766 -0.6829 5.4595 20 6 4.4875 -1.6227 4.9109 21 6 4.1193 -1.3044 2.3663 22 1 -0.3633 0.4185 0.9386 23 1 -0.3634 0.6037 -0.8317 24 1 -0.3633 -1.0221 -0.1069 25 1 0.7082 1.1610 -3.4843 26 1 1.3720 -0.5895 1.9662 27 1 4.0686 1.6745 2.3911 28 1 2.2916 1.4687 2.4523 29 1 6.5477 -0.8108 3.4731 30 1 5.9637 0.8533 3.9116 31 1 5.1890 0.1003 6.1110 32 1 6.4293 -1.2079 5.8901 33 1 3.5949 -1.6692 5.5348 34 1 4.8608 -2.6073 4.6290 35 1 3.5070 -2.2000 2.4718 36 1 5.0643 -1.5430 1.8785 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688298527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:36 Heat of formation + Delta-G solvation = -25.406591 kcal Electronic energy + Delta-G solvation = -16106.231235 eV Core-core repulsion = 13590.871795 eV Total energy + Delta-G solvation = -2515.359441 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.28152 -36.63109 -34.96218 -32.58572 -30.51280 -27.84255 -26.38941 -25.48692 -25.13044 -22.71319 -20.37358 -20.23371 -19.01925 -16.10812 -15.89482 -15.70662 -15.29330 -14.75416 -14.34960 -13.81778 -13.50759 -13.12884 -12.71265 -12.40358 -12.10513 -11.65363 -11.29598 -11.18262 -10.90158 -10.85925 -10.77772 -10.68636 -10.56412 -10.22183 -10.12670 -9.96357 -9.62280 -9.43646 -9.06014 -8.39509 -7.22169 -5.97564 -4.00864 3.33739 3.38023 3.41366 3.98245 4.44327 4.64804 4.68076 4.86601 5.11084 5.20221 5.29661 5.36637 5.39308 5.61237 5.71433 5.74006 5.85255 5.91423 5.99534 6.05246 6.13956 6.28373 6.36747 6.51142 6.59444 6.76457 6.96803 7.04474 7.18986 7.47021 7.74009 7.92757 8.29185 8.36142 8.74861 9.06429 9.64271 11.09247 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044321 B = 0.006499 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.598690 B = 4307.554797 C = 4610.074675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.209 3.791 3 H 0.001 0.999 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.289 1.289 10 H -0.279 1.279 11 H -0.277 1.277 12 N -0.674 5.674 13 C 0.067 3.933 14 H 0.093 0.907 15 C 0.017 3.983 16 O -0.355 6.355 17 C 0.080 3.920 18 C -0.157 4.157 19 C -0.136 4.136 20 C -0.127 4.127 21 C -0.128 4.128 22 H 0.005 0.995 23 H 0.085 0.915 24 H 0.036 0.964 25 H 0.260 0.740 26 H 0.321 0.679 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.256 -1.782 11.769 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.102 3.898 3 H 0.019 0.981 4 C -0.533 4.533 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.215 1.215 10 H -0.205 1.205 11 H -0.203 1.203 12 N -0.304 5.304 13 C -0.044 4.044 14 H 0.111 0.889 15 C -0.061 4.061 16 O -0.273 6.273 17 C 0.039 3.961 18 C -0.194 4.194 19 C -0.174 4.174 20 C -0.164 4.164 21 C -0.167 4.167 22 H 0.024 0.976 23 H 0.103 0.897 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.138 0.862 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.268 -2.151 11.437 13.720 hybrid contribution 0.153 0.538 -0.783 0.962 sum 7.421 -1.614 10.654 13.084 Atomic orbital electron populations 1.21936 0.98213 1.00651 0.99072 1.19203 0.91570 0.92069 0.86927 0.98089 1.21142 1.30546 1.12023 0.89591 0.92117 1.24963 0.95408 0.95154 0.99028 1.69884 1.37230 1.23234 1.23417 0.86591 0.78988 0.79798 0.82162 1.21456 1.20456 1.20296 1.60733 1.01526 1.60583 1.07570 1.22842 0.93524 0.91232 0.96845 0.88877 1.24368 1.01712 0.96918 0.83094 1.88944 1.57686 1.50318 1.30396 1.22651 0.88758 0.89240 0.95412 1.23349 0.97225 1.01850 0.97017 1.22831 0.98692 0.99376 0.96479 1.22891 0.99419 0.97434 0.96664 1.22814 1.00608 0.99818 0.93432 0.97580 0.89672 0.94464 0.93045 0.86206 0.92697 0.89323 0.89360 0.91195 0.90202 0.91664 0.90737 0.88997 0.89588 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.92 37.16 0.33 -3.08 16 2 C 0.21 5.24 2.47 -68.87 -0.17 5.07 16 3 H 0.00 0.04 7.84 -51.93 -0.41 -0.37 16 4 C -0.49 -13.64 8.59 -34.44 -0.30 -13.93 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.66 11.39 55.43 0.63 -25.03 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.67 -14.38 6.01 -99.16 -0.60 -14.97 16 13 C 0.07 1.26 3.20 -66.00 -0.21 1.05 16 14 H 0.09 1.92 7.72 -51.93 -0.40 1.52 16 15 C 0.02 0.30 7.12 37.96 0.27 0.57 16 16 O -0.35 -5.96 11.44 -35.23 -0.40 -6.36 16 17 C 0.08 1.14 1.13 -90.53 -0.10 1.04 16 18 C -0.16 -1.91 7.57 -26.33 -0.20 -2.11 16 19 C -0.14 -1.50 8.09 -25.74 -0.21 -1.71 16 20 C -0.13 -1.53 7.61 -26.33 -0.20 -1.73 16 21 C -0.13 -2.04 6.27 -25.53 -0.16 -2.20 16 22 H 0.01 0.11 8.00 -51.93 -0.42 -0.30 16 23 H 0.08 2.26 6.25 -51.92 -0.32 1.93 16 24 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.32 6.48 7.92 -39.30 -0.31 6.17 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.56 8.00 -51.92 -0.42 1.14 16 29 H 0.09 0.96 7.97 -51.93 -0.41 0.55 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.42 7.94 -51.93 -0.41 1.01 16 36 H 0.07 1.06 7.85 -51.93 -0.41 0.66 16 LS Contribution 288.58 15.07 4.35 4.35 Total: -1.00 -28.49 288.58 -8.09 -36.58 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.01 Total: 4.53 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -1.04 Total: -15.59 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.04 Total: -40.00 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.40 Total: -6.36 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.49 -8.09 -36.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688298527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.173 kcal (2) G-P(sol) polarization free energy of solvation -28.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds