Wall clock time and date at job start Mon Mar 30 2020 03:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 109.47372 * 2 1 4 4 C 1.50693 * 109.47787 * 120.00440 * 2 1 3 5 5 H 1.07993 * 120.00520 * 119.99185 * 4 2 1 6 6 C 1.37877 * 119.99675 * 300.00273 * 4 2 1 7 7 N 1.31519 * 119.99896 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00369 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47061 * 90.00156 * 8 6 4 10 10 H 1.48492 * 109.47283 * 210.00381 * 8 6 4 11 11 H 1.48503 * 109.46666 * 330.00584 * 8 6 4 12 12 N 1.46904 * 109.47064 * 240.00952 * 2 1 3 13 13 C 1.46892 * 111.00590 * 84.99364 * 12 2 1 14 14 H 1.09007 * 110.93255 * 31.35518 * 13 12 2 15 15 C 1.55044 * 110.87458 * 267.70238 * 13 12 2 16 16 O 1.44545 * 103.62156 * 205.19336 * 15 13 12 17 17 C 1.43067 * 106.80432 * 39.33887 * 16 15 13 18 18 C 1.53146 * 115.22437 * 204.06739 * 17 16 15 19 19 C 1.53896 * 86.99607 * 268.13412 * 18 17 16 20 20 C 1.53154 * 115.21280 * 104.08817 * 17 16 15 21 21 C 1.53526 * 108.05783 * 334.09668 * 17 16 15 22 22 H 1.09007 * 109.46751 * 299.99535 * 1 2 3 23 23 H 1.08999 * 109.47113 * 59.99215 * 1 2 3 24 24 H 1.08997 * 109.47231 * 179.97438 * 1 2 3 25 25 H 0.97001 * 120.00009 * 179.97438 * 7 6 4 26 26 H 1.00900 * 110.99280 * 321.04039 * 12 2 1 27 27 H 1.08999 * 110.59586 * 323.73064 * 15 13 12 28 28 H 1.09005 * 110.59081 * 86.66394 * 15 13 12 29 29 H 1.09002 * 113.64479 * 22.68219 * 18 17 16 30 30 H 1.08999 * 113.64354 * 153.59080 * 18 17 16 31 31 H 1.09000 * 113.59473 * 89.65276 * 19 18 17 32 32 H 1.08993 * 113.59930 * 220.50178 * 19 18 17 33 33 H 1.08992 * 113.64881 * 206.33343 * 20 17 16 34 34 H 1.09001 * 113.64028 * 337.24291 * 20 17 16 35 35 H 1.08999 * 110.54376 * 120.31902 * 21 17 16 36 36 H 1.08996 * 110.54516 * 243.11830 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6532 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 2.1375 -0.8598 3.5564 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8742 2.6995 10 1 0.9772 1.9951 3.9071 11 1 0.8490 2.1771 1.4923 12 7 2.0196 -0.6923 -1.1996 13 6 2.0823 0.2228 -2.3469 14 1 2.3003 1.2402 -2.0221 15 6 0.7662 0.1740 -3.1650 16 8 1.1728 0.5873 -4.4891 17 6 2.4471 -0.0140 -4.7369 18 6 3.3164 0.7028 -5.7742 19 6 2.6854 -0.2265 -6.8261 20 6 2.4265 -1.2217 -5.6786 21 6 3.1277 -0.2619 -3.3833 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.9035 -0.5282 4.4374 26 1 1.4495 -1.4977 -1.4102 27 1 0.3650 -0.8392 -3.1859 28 1 0.0337 0.8692 -2.7545 29 1 3.0595 1.7535 -5.9088 30 1 4.3854 0.5426 -5.6344 31 1 1.7741 0.1732 -7.2709 32 1 3.3954 -0.5905 -7.5687 33 1 3.2475 -1.9192 -5.5131 34 1 1.4562 -1.7152 -5.7353 35 1 3.3361 -1.3233 -3.2486 36 1 4.0446 0.3221 -3.3035 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688298528.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:38 Heat of formation + Delta-G solvation = -16.629506 kcal Electronic energy + Delta-G solvation = -16087.794205 eV Core-core repulsion = 13572.815367 eV Total energy + Delta-G solvation = -2514.978838 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.37918 -36.94273 -35.32260 -32.68596 -30.96445 -28.15982 -26.75367 -25.78281 -24.95158 -22.76052 -20.77463 -20.38250 -19.27203 -16.72586 -16.06859 -15.89847 -15.29487 -14.80390 -14.54302 -13.99218 -13.64556 -13.12864 -12.80318 -12.55145 -12.31252 -12.28119 -12.13069 -11.70147 -11.35150 -11.08464 -10.94204 -10.82547 -10.54236 -10.34167 -10.16750 -10.01327 -9.51781 -9.44408 -9.12508 -8.58968 -7.52746 -6.06652 -4.04396 3.23809 3.33764 3.36830 3.79396 4.38304 4.53469 4.57557 4.79255 4.92301 4.99305 5.11074 5.17884 5.23780 5.42167 5.55048 5.64436 5.70394 5.81699 5.83770 5.87509 6.01978 6.14455 6.16700 6.21308 6.26080 6.30215 6.40238 6.47739 6.68953 7.05494 7.11009 7.66975 7.86547 8.23039 8.65870 9.04323 9.55641 11.06854 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.058284 B = 0.006214 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.293928 B = 4505.049168 C = 4687.763697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.181 3.819 3 H 0.035 0.965 4 C -0.500 4.500 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.657 5.657 13 C 0.058 3.942 14 H 0.087 0.913 15 C 0.018 3.982 16 O -0.357 6.357 17 C 0.080 3.920 18 C -0.133 4.133 19 C -0.136 4.136 20 C -0.153 4.153 21 C -0.130 4.130 22 H 0.046 0.954 23 H 0.028 0.972 24 H 0.054 0.946 25 H 0.263 0.737 26 H 0.334 0.666 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.541 2.048 -17.081 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.073 3.927 3 H 0.053 0.947 4 C -0.538 4.538 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.287 5.287 13 C -0.054 4.054 14 H 0.105 0.895 15 C -0.061 4.061 16 O -0.275 6.275 17 C 0.040 3.960 18 C -0.170 4.170 19 C -0.174 4.174 20 C -0.191 4.191 21 C -0.168 4.168 22 H 0.064 0.936 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.152 0.848 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.020 2.262 -16.849 17.000 hybrid contribution -1.649 0.779 0.244 1.841 sum -1.629 3.041 -16.605 16.959 Atomic orbital electron populations 1.22975 1.01431 1.00991 0.99049 1.19746 0.88639 0.95076 0.89280 0.94745 1.20962 1.31300 1.13820 0.87712 0.90015 1.24941 0.95963 0.96598 0.95873 1.69884 1.45853 1.40311 0.97854 0.86896 0.80572 0.83938 0.76931 1.20761 1.22386 1.19497 1.60602 1.57647 1.08194 1.02236 1.23232 0.92620 0.98000 0.91547 0.89498 1.24609 0.98828 1.00040 0.82593 1.88699 1.34156 1.70808 1.33849 1.22700 0.85084 0.93869 0.94363 1.23081 0.98958 0.99804 0.95165 1.22827 1.00834 0.97436 0.96278 1.23427 1.02471 0.96787 0.96411 1.22802 0.98822 1.03101 0.92063 0.93580 0.95316 0.92645 0.92658 0.84769 0.92224 0.89190 0.90845 0.88996 0.90189 0.91592 0.89270 0.91156 0.89692 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.88 8.49 37.16 0.32 -3.57 16 2 C 0.18 4.17 2.16 -68.87 -0.15 4.02 16 3 H 0.03 0.83 6.50 -51.92 -0.34 0.49 16 4 C -0.50 -13.92 9.42 -34.44 -0.32 -14.25 16 5 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 6 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 7 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 8 Si 0.89 21.80 24.37 -169.99 -4.14 17.66 16 9 H -0.28 -6.73 6.87 56.52 0.39 -6.34 16 10 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 12 N -0.66 -12.88 6.09 -98.74 -0.60 -13.49 16 13 C 0.06 0.96 3.42 -65.59 -0.22 0.74 16 14 H 0.09 1.54 7.45 -51.93 -0.39 1.15 16 15 C 0.02 0.27 6.44 38.24 0.25 0.51 16 16 O -0.36 -5.51 11.27 -35.23 -0.40 -5.90 16 17 C 0.08 1.06 1.38 -90.19 -0.12 0.94 16 18 C -0.13 -1.48 7.46 -26.19 -0.20 -1.67 16 19 C -0.14 -1.40 8.10 -25.70 -0.21 -1.61 16 20 C -0.15 -1.74 7.48 -26.08 -0.19 -1.94 16 21 C -0.13 -1.85 6.22 -25.41 -0.16 -2.01 16 22 H 0.05 1.03 3.27 -51.92 -0.17 0.86 16 23 H 0.03 0.51 5.96 -51.93 -0.31 0.20 16 24 H 0.05 1.12 8.13 -51.93 -0.42 0.70 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 26 H 0.33 6.15 7.93 -39.29 -0.31 5.83 16 27 H 0.06 0.87 7.76 -51.93 -0.40 0.46 16 28 H 0.09 1.36 6.80 -51.93 -0.35 1.00 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.21 7.81 -51.93 -0.41 0.81 16 36 H 0.08 1.06 7.93 -51.93 -0.41 0.65 16 LS Contribution 276.89 15.07 4.17 4.17 Total: -1.00 -29.78 276.89 -6.96 -36.73 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.65 Total: 4.54 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -1.11 Total: -17.00 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.17 Total: -40.20 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.40 Total: -5.90 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.14 Total: 17.66 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.78 -6.96 -36.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688298528.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.104 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds