Wall clock time and date at job start Mon Mar 30 2020 03:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 109.47372 * 2 1 4 4 C 1.50693 * 109.47787 * 120.00440 * 2 1 3 5 5 H 1.07993 * 120.00520 * 119.99185 * 4 2 1 6 6 C 1.37877 * 119.99675 * 300.00273 * 4 2 1 7 7 N 1.31519 * 119.99896 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00369 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47061 * 90.00156 * 8 6 4 10 10 H 1.48492 * 109.47283 * 210.00381 * 8 6 4 11 11 H 1.48503 * 109.46666 * 330.00584 * 8 6 4 12 12 N 1.46904 * 109.47064 * 240.00952 * 2 1 3 13 13 C 1.46892 * 111.00590 * 84.99364 * 12 2 1 14 14 H 1.09007 * 110.93255 * 31.35518 * 13 12 2 15 15 C 1.55044 * 110.87458 * 267.70238 * 13 12 2 16 16 O 1.44545 * 103.62156 * 205.19336 * 15 13 12 17 17 C 1.43067 * 106.80432 * 39.33887 * 16 15 13 18 18 C 1.53146 * 115.22437 * 204.06739 * 17 16 15 19 19 C 1.53896 * 86.99607 * 268.13412 * 18 17 16 20 20 C 1.53154 * 115.21280 * 104.08817 * 17 16 15 21 21 C 1.53526 * 108.05783 * 334.09668 * 17 16 15 22 22 H 1.09007 * 109.46751 * 299.99535 * 1 2 3 23 23 H 1.08999 * 109.47113 * 59.99215 * 1 2 3 24 24 H 1.08997 * 109.47231 * 179.97438 * 1 2 3 25 25 H 0.97001 * 120.00009 * 179.97438 * 7 6 4 26 26 H 1.00900 * 110.99280 * 321.04039 * 12 2 1 27 27 H 1.08999 * 110.59586 * 323.73064 * 15 13 12 28 28 H 1.09005 * 110.59081 * 86.66394 * 15 13 12 29 29 H 1.09002 * 113.64479 * 22.68219 * 18 17 16 30 30 H 1.08999 * 113.64354 * 153.59080 * 18 17 16 31 31 H 1.09000 * 113.59473 * 89.65276 * 19 18 17 32 32 H 1.08993 * 113.59930 * 220.50178 * 19 18 17 33 33 H 1.08992 * 113.64881 * 206.33343 * 20 17 16 34 34 H 1.09001 * 113.64028 * 337.24291 * 20 17 16 35 35 H 1.08999 * 110.54376 * 120.31902 * 21 17 16 36 36 H 1.08996 * 110.54516 * 243.11830 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6532 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 2.1375 -0.8598 3.5564 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8742 2.6995 10 1 0.9772 1.9951 3.9071 11 1 0.8490 2.1771 1.4923 12 7 2.0196 -0.6923 -1.1996 13 6 2.0823 0.2228 -2.3469 14 1 2.3003 1.2402 -2.0221 15 6 0.7662 0.1740 -3.1650 16 8 1.1728 0.5873 -4.4891 17 6 2.4471 -0.0140 -4.7369 18 6 3.3164 0.7028 -5.7742 19 6 2.6854 -0.2265 -6.8261 20 6 2.4265 -1.2217 -5.6786 21 6 3.1277 -0.2619 -3.3833 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.9035 -0.5282 4.4374 26 1 1.4495 -1.4977 -1.4102 27 1 0.3650 -0.8392 -3.1859 28 1 0.0337 0.8692 -2.7545 29 1 3.0595 1.7535 -5.9088 30 1 4.3854 0.5426 -5.6344 31 1 1.7741 0.1732 -7.2709 32 1 3.3954 -0.5905 -7.5687 33 1 3.2475 -1.9192 -5.5131 34 1 1.4562 -1.7152 -5.7353 35 1 3.3361 -1.3233 -3.2486 36 1 4.0446 0.3221 -3.3035 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688298528.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:38 Heat of formation + Delta-G solvation = -37.937298 kcal Electronic energy + Delta-G solvation = -16088.718180 eV Core-core repulsion = 13572.815367 eV Total energy + Delta-G solvation = -2515.902813 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.45939 -38.31845 -36.63327 -34.58810 -32.62060 -29.55502 -28.06587 -26.95156 -26.63812 -23.77654 -22.33628 -21.94898 -20.28766 -18.72387 -17.39436 -17.10236 -16.67662 -16.28562 -15.67956 -15.47108 -15.03275 -14.61158 -14.43610 -13.96039 -13.81437 -13.63289 -13.24076 -13.15142 -12.85506 -12.68416 -12.31294 -12.01772 -11.89397 -11.71104 -11.50097 -11.47304 -11.22665 -10.92440 -10.75080 -10.49546 -9.08517 -8.27496 -6.30050 1.29311 1.35224 1.44880 2.31618 2.69286 3.06700 3.41643 3.62536 3.69954 3.81116 3.92876 3.97301 4.10995 4.24630 4.38419 4.47526 4.54727 4.64993 4.69314 4.73893 4.83325 4.86103 4.96020 5.02687 5.05472 5.13610 5.17423 5.33381 5.36592 5.39217 5.65394 5.96493 6.06857 6.65710 6.68153 6.77690 7.34984 8.89874 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.058284 B = 0.006214 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.293928 B = 4505.049168 C = 4687.763697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.187 3.813 3 H 0.027 0.973 4 C -0.504 4.504 5 H 0.037 0.963 6 C 0.010 3.990 7 N -0.951 5.951 8 Si 0.951 3.049 9 H -0.266 1.266 10 H -0.300 1.300 11 H -0.251 1.251 12 N -0.666 5.666 13 C 0.054 3.946 14 H 0.075 0.925 15 C 0.025 3.975 16 O -0.369 6.369 17 C 0.068 3.932 18 C -0.130 4.130 19 C -0.129 4.129 20 C -0.151 4.151 21 C -0.125 4.125 22 H 0.035 0.965 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.265 0.735 26 H 0.340 0.660 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 3.042 -19.152 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.077 3.923 3 H 0.045 0.955 4 C -0.543 4.543 5 H 0.055 0.945 6 C -0.187 4.187 7 N -0.592 5.592 8 Si 0.778 3.222 9 H -0.192 1.192 10 H -0.227 1.227 11 H -0.175 1.175 12 N -0.297 5.297 13 C -0.057 4.057 14 H 0.094 0.906 15 C -0.054 4.054 16 O -0.288 6.288 17 C 0.028 3.972 18 C -0.168 4.168 19 C -0.166 4.166 20 C -0.189 4.189 21 C -0.163 4.163 22 H 0.054 0.946 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.159 0.841 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.126 0.874 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.789 3.253 -18.962 19.255 hybrid contribution -1.299 0.388 0.841 1.595 sum -2.088 3.641 -18.122 18.601 Atomic orbital electron populations 1.22838 0.99288 1.01645 1.00113 1.19494 0.90154 0.93974 0.88637 0.95479 1.21258 1.30307 1.12591 0.90130 0.94490 1.25795 0.97546 0.99975 0.95399 1.70044 1.47981 1.42574 0.98552 0.85829 0.79116 0.80020 0.77204 1.19227 1.22740 1.17512 1.60444 1.57902 1.08893 1.02465 1.23238 0.94651 0.96781 0.91016 0.90631 1.24481 0.97842 1.00595 0.82437 1.88688 1.35195 1.71335 1.33557 1.22960 0.84499 0.95557 0.94186 1.23145 0.99551 0.99623 0.94440 1.22793 1.01047 0.96527 0.96249 1.23454 1.02774 0.96503 0.96144 1.22780 0.98470 1.02986 0.92075 0.94612 0.91957 0.92339 0.92597 0.84067 0.91459 0.88879 0.91218 0.87404 0.90653 0.89508 0.88024 0.91632 0.89804 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.12 8.49 71.98 0.61 -6.50 16 2 C 0.19 8.44 2.16 44.17 0.10 8.54 16 3 H 0.03 1.28 6.50 -2.38 -0.02 1.26 16 4 C -0.50 -28.65 9.42 25.60 0.24 -28.41 16 5 H 0.04 2.37 8.06 -2.91 -0.02 2.34 16 6 C 0.01 0.56 5.45 84.65 0.46 1.02 16 7 N -0.95 -59.61 13.96 21.45 0.30 -59.32 16 8 Si 0.95 44.64 24.37 68.60 1.67 46.31 16 9 H -0.27 -11.82 6.87 99.48 0.68 -11.14 16 10 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 11 H -0.25 -10.92 6.53 99.48 0.65 -10.27 16 12 N -0.67 -25.66 6.09 -466.30 -2.84 -28.50 16 13 C 0.05 1.73 3.42 46.29 0.16 1.89 16 14 H 0.08 2.58 7.45 -2.38 -0.02 2.56 16 15 C 0.02 0.70 6.44 72.68 0.47 1.17 16 16 O -0.37 -10.60 11.27 -148.98 -1.68 -12.28 16 17 C 0.07 1.64 1.38 -10.52 -0.01 1.63 16 18 C -0.13 -2.55 7.46 30.95 0.23 -2.32 16 19 C -0.13 -2.27 8.10 31.26 0.25 -2.02 16 20 C -0.15 -3.04 7.48 31.01 0.23 -2.81 16 21 C -0.12 -3.37 6.22 31.45 0.20 -3.17 16 22 H 0.04 1.48 3.27 -2.38 -0.01 1.48 16 23 H 0.06 2.03 5.96 -2.39 -0.01 2.02 16 24 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 25 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 26 H 0.34 12.22 7.93 -89.69 -0.71 11.51 16 27 H 0.07 1.80 7.76 -2.39 -0.02 1.78 16 28 H 0.09 2.55 6.80 -2.38 -0.02 2.53 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 30 H 0.11 1.76 8.11 -2.39 -0.02 1.74 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.79 8.08 -2.39 -0.02 1.77 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 2.27 7.81 -2.39 -0.02 2.25 16 36 H 0.08 2.11 7.93 -2.39 -0.02 2.09 16 Total: -1.00 -64.57 276.89 0.65 -63.92 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.27 Total: 20.86 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: 2.93 Total: -31.00 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -2.54 Total: -87.82 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -1.68 Total: -12.28 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.67 Total: 46.31 kcal Total: -64.57 0.65 -63.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688298528.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.983 kcal (2) G-P(sol) polarization free energy of solvation -64.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds