Wall clock time and date at job start Mon Mar 30 2020 03:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 C 1.46896 * 111.00107 * 84.99918 * 12 2 1 14 14 H 1.09001 * 110.42511 * 325.70391 * 13 12 2 15 15 C 1.54169 * 110.47121 * 88.20779 * 13 12 2 16 16 O 1.43980 * 107.43355 * 116.92309 * 15 13 12 17 17 C 1.43104 * 106.89814 * 24.89847 * 16 15 13 18 18 C 1.52651 * 116.19954 * 192.63035 * 17 16 15 19 19 C 1.53990 * 86.73322 * 216.69475 * 18 17 16 20 20 C 1.52644 * 116.19682 * 90.84765 * 17 16 15 21 21 C 1.54124 * 105.18920 * 321.81415 * 17 16 15 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.00900 * 111.00037 * 208.95264 * 12 2 1 27 27 H 1.09005 * 109.85589 * 236.38595 * 15 13 12 28 28 H 1.08994 * 109.86077 * 357.45715 * 15 13 12 29 29 H 1.08998 * 113.66948 * 331.15772 * 18 17 16 30 30 H 1.08993 * 113.66736 * 102.23383 * 18 17 16 31 31 H 1.08998 * 113.58353 * 269.98129 * 19 18 17 32 32 H 1.09007 * 113.64901 * 139.20184 * 19 18 17 33 33 H 1.09004 * 113.67135 * 257.77104 * 20 17 16 34 34 H 1.09009 * 113.67282 * 28.84527 * 20 17 16 35 35 H 1.08995 * 110.92765 * 277.26059 * 21 17 16 36 36 H 1.08999 * 111.05330 * 153.50150 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 1 1.2706 0.9486 -2.2994 15 6 3.4459 0.9409 -2.3898 16 8 4.1034 0.5457 -3.6082 17 6 3.0773 0.1627 -4.5293 18 6 3.5387 -0.5744 -5.7839 19 6 2.4366 0.1957 -6.5348 20 6 2.5369 1.2673 -5.4335 21 6 2.0231 -0.5707 -3.6771 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7006 1.1552 3.4844 26 1 2.9173 -1.1204 -1.0289 27 1 3.2961 2.0206 -2.3834 28 1 4.0481 0.6439 -1.5312 29 1 4.5485 -0.3118 -6.0992 30 1 3.3718 -1.6508 -5.7453 31 1 1.4778 -0.3224 -6.5532 32 1 2.7441 0.5510 -7.5183 33 1 1.5709 1.6597 -5.1156 34 1 3.2635 2.0505 -5.6499 35 1 2.3038 -1.6124 -3.5222 36 1 1.0343 -0.4985 -4.1301 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688298529.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:40 Heat of formation + Delta-G solvation = -28.368591 kcal Electronic energy + Delta-G solvation = -16051.265405 eV Core-core repulsion = 13535.777523 eV Total energy + Delta-G solvation = -2515.487883 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.34089 -36.72310 -35.17787 -32.72828 -30.27403 -27.72305 -26.48233 -25.59383 -25.12917 -22.96539 -20.97386 -19.69352 -18.70384 -16.76881 -15.90481 -15.52867 -15.43672 -14.93591 -14.60161 -13.66130 -13.46402 -12.88526 -12.60347 -12.24040 -12.16057 -11.63923 -11.51859 -11.30754 -11.15609 -10.95577 -10.80028 -10.69271 -10.49624 -10.32615 -10.17388 -10.15649 -9.81726 -9.29712 -8.86068 -8.50168 -7.31140 -6.05546 -4.12156 3.27506 3.35535 3.39906 4.07031 4.37805 4.56701 4.60563 4.79931 4.97063 5.18269 5.25460 5.28697 5.31528 5.59209 5.66803 5.72833 5.80368 5.85958 5.88307 6.02099 6.10181 6.22604 6.33205 6.41401 6.48711 6.83270 7.09835 7.18771 7.25935 7.47526 7.75663 7.84966 8.23043 8.34329 8.61652 8.98271 9.54255 11.00817 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.056704 B = 0.005910 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.677776 B = 4736.991723 C = 4879.894145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.209 3.791 3 H 0.002 0.998 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.677 5.677 13 C 0.061 3.939 14 H 0.083 0.917 15 C 0.021 3.979 16 O -0.366 6.366 17 C 0.077 3.923 18 C -0.124 4.124 19 C -0.138 4.138 20 C -0.155 4.155 21 C -0.116 4.116 22 H 0.003 0.997 23 H 0.032 0.968 24 H 0.081 0.919 25 H 0.261 0.739 26 H 0.335 0.665 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.291 -0.140 -14.039 14.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.102 3.898 3 H 0.020 0.980 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.308 5.308 13 C -0.051 4.051 14 H 0.101 0.899 15 C -0.058 4.058 16 O -0.285 6.285 17 C 0.037 3.963 18 C -0.161 4.161 19 C -0.175 4.175 20 C -0.192 4.192 21 C -0.154 4.154 22 H 0.022 0.978 23 H 0.051 0.949 24 H 0.100 0.900 25 H 0.071 0.929 26 H 0.153 0.847 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.805 -0.277 -14.072 14.190 hybrid contribution 0.819 0.270 1.262 1.528 sum 2.624 -0.006 -12.810 13.076 Atomic orbital electron populations 1.21733 0.97859 0.99402 0.99337 1.19146 0.92627 0.92427 0.85583 0.98040 1.21293 1.31396 1.12626 0.90417 0.92133 1.24916 0.94984 0.94985 0.99084 1.69901 1.36590 1.22962 1.23407 0.86462 0.78601 0.79656 0.82817 1.19726 1.21075 1.20964 1.60783 1.32343 1.31931 1.05786 1.22910 0.95533 0.94085 0.92537 0.89891 1.24112 0.95300 0.98933 0.87420 1.88653 1.30169 1.85823 1.23841 1.23168 0.88881 0.94855 0.89372 1.22905 0.99432 0.99673 0.94122 1.22735 0.99240 0.97860 0.97700 1.23320 1.01717 0.97489 0.96710 1.22776 0.97955 1.00328 0.94351 0.97788 0.94919 0.90030 0.92949 0.84672 0.92918 0.89662 0.89573 0.90724 0.89917 0.91126 0.91061 0.89673 0.89686 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 9.17 37.16 0.34 -2.75 16 2 C 0.21 5.24 2.47 -68.86 -0.17 5.07 16 3 H 0.00 0.05 7.80 -51.93 -0.40 -0.35 16 4 C -0.52 -14.13 8.60 -34.44 -0.30 -14.43 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.29 11.31 55.43 0.63 -24.66 16 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.68 -14.35 6.05 -99.20 -0.60 -14.95 16 13 C 0.06 1.11 3.13 -66.04 -0.21 0.90 16 14 H 0.08 1.56 7.20 -51.93 -0.37 1.18 16 15 C 0.02 0.37 7.30 37.77 0.28 0.64 16 16 O -0.37 -6.26 11.33 -35.23 -0.40 -6.66 16 17 C 0.08 1.09 1.24 -90.41 -0.11 0.98 16 18 C -0.12 -1.44 7.67 -26.39 -0.20 -1.65 16 19 C -0.14 -1.39 7.94 -25.72 -0.20 -1.60 16 20 C -0.15 -1.87 7.61 -26.40 -0.20 -2.07 16 21 C -0.12 -1.76 6.02 -25.08 -0.15 -1.91 16 22 H 0.00 0.07 7.47 -51.93 -0.39 -0.32 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.08 2.20 6.06 -51.93 -0.31 1.88 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.33 7.06 7.69 -39.29 -0.30 6.76 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.09 1.59 7.61 -51.93 -0.40 1.20 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 34 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 35 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 36 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 LS Contribution 286.96 15.07 4.32 4.32 Total: -1.00 -28.26 286.96 -8.02 -36.29 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.93 Total: 4.67 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.02 Total: -15.20 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.03 Total: -39.61 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.40 Total: -6.66 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.26 -8.02 -36.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688298529.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.917 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds