Wall clock time and date at job start Mon Mar 30 2020 03:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 C 1.46896 * 111.00107 * 84.99918 * 12 2 1 14 14 H 1.09001 * 110.42511 * 325.70391 * 13 12 2 15 15 C 1.54169 * 110.47121 * 88.20779 * 13 12 2 16 16 O 1.43980 * 107.43355 * 116.92309 * 15 13 12 17 17 C 1.43104 * 106.89814 * 24.89847 * 16 15 13 18 18 C 1.52651 * 116.19954 * 192.63035 * 17 16 15 19 19 C 1.53990 * 86.73322 * 216.69475 * 18 17 16 20 20 C 1.52644 * 116.19682 * 90.84765 * 17 16 15 21 21 C 1.54124 * 105.18920 * 321.81415 * 17 16 15 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.00900 * 111.00037 * 208.95264 * 12 2 1 27 27 H 1.09005 * 109.85589 * 236.38595 * 15 13 12 28 28 H 1.08994 * 109.86077 * 357.45715 * 15 13 12 29 29 H 1.08998 * 113.66948 * 331.15772 * 18 17 16 30 30 H 1.08993 * 113.66736 * 102.23383 * 18 17 16 31 31 H 1.08998 * 113.58353 * 269.98129 * 19 18 17 32 32 H 1.09007 * 113.64901 * 139.20184 * 19 18 17 33 33 H 1.09004 * 113.67135 * 257.77104 * 20 17 16 34 34 H 1.09009 * 113.67282 * 28.84527 * 20 17 16 35 35 H 1.08995 * 110.92765 * 277.26059 * 21 17 16 36 36 H 1.08999 * 111.05330 * 153.50150 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 1 1.2706 0.9486 -2.2994 15 6 3.4459 0.9409 -2.3898 16 8 4.1034 0.5457 -3.6082 17 6 3.0773 0.1627 -4.5293 18 6 3.5387 -0.5744 -5.7839 19 6 2.4366 0.1957 -6.5348 20 6 2.5369 1.2673 -5.4335 21 6 2.0231 -0.5707 -3.6771 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7006 1.1552 3.4844 26 1 2.9173 -1.1204 -1.0289 27 1 3.2961 2.0206 -2.3834 28 1 4.0481 0.6439 -1.5312 29 1 4.5485 -0.3118 -6.0992 30 1 3.3718 -1.6508 -5.7453 31 1 1.4778 -0.3224 -6.5532 32 1 2.7441 0.5510 -7.5183 33 1 1.5709 1.6597 -5.1156 34 1 3.2635 2.0505 -5.6499 35 1 2.3038 -1.6124 -3.5222 36 1 1.0343 -0.4985 -4.1301 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688298529.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:40 Heat of formation + Delta-G solvation = -46.379373 kcal Electronic energy + Delta-G solvation = -16052.046411 eV Core-core repulsion = 13535.777523 eV Total energy + Delta-G solvation = -2516.268889 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.52170 -38.13148 -36.71046 -34.60688 -31.99437 -29.22116 -27.95415 -27.23132 -26.56785 -23.99181 -22.62700 -21.45071 -19.78875 -18.61798 -17.40924 -16.93486 -16.66695 -16.50621 -15.91938 -15.38008 -15.06821 -14.58599 -13.90599 -13.71415 -13.31889 -13.19930 -12.99740 -12.84427 -12.73094 -12.57321 -12.24366 -12.22131 -12.06539 -11.90931 -11.82011 -11.60786 -11.15336 -10.88922 -10.61704 -10.47908 -9.07178 -8.15158 -6.29179 1.40553 1.42669 1.54249 2.40437 2.86284 3.13622 3.37111 3.64004 3.71316 3.81782 3.90557 3.99365 4.17274 4.20320 4.50197 4.58865 4.73229 4.81202 4.82069 4.84042 4.99302 5.02197 5.06894 5.09801 5.14247 5.20395 5.30279 5.43747 5.49514 5.66265 5.83688 6.01961 6.20141 6.43393 6.72404 6.95315 7.41455 8.90690 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.056704 B = 0.005910 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.677776 B = 4736.991723 C = 4879.894145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.215 3.785 3 H -0.027 1.027 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.962 3.038 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.279 1.279 12 N -0.673 5.673 13 C 0.058 3.942 14 H 0.075 0.925 15 C 0.028 3.972 16 O -0.380 6.380 17 C 0.061 3.939 18 C -0.122 4.122 19 C -0.123 4.123 20 C -0.156 4.156 21 C -0.106 4.106 22 H 0.022 0.978 23 H 0.028 0.972 24 H 0.057 0.943 25 H 0.263 0.737 26 H 0.334 0.666 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 -0.832 -15.332 15.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 H -0.009 1.009 4 C -0.576 4.576 5 H 0.076 0.924 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.787 3.213 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.205 1.205 12 N -0.304 5.304 13 C -0.053 4.053 14 H 0.093 0.907 15 C -0.051 4.051 16 O -0.299 6.299 17 C 0.021 3.979 18 C -0.159 4.159 19 C -0.160 4.160 20 C -0.193 4.193 21 C -0.144 4.144 22 H 0.041 0.959 23 H 0.047 0.953 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.152 0.848 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.886 -0.973 -15.392 15.538 hybrid contribution 0.805 0.512 1.614 1.875 sum 2.691 -0.461 -13.778 14.046 Atomic orbital electron populations 1.21559 0.97640 0.98948 0.99088 1.18939 0.92743 0.90940 0.86706 1.00943 1.21604 1.31615 1.12765 0.91645 0.92387 1.25707 0.95105 0.95667 1.01997 1.70019 1.37379 1.24084 1.24152 0.85447 0.78119 0.78598 0.79089 1.19169 1.20649 1.20520 1.60733 1.32290 1.32213 1.05176 1.22969 0.95511 0.94085 0.92729 0.90674 1.23895 0.94695 0.98964 0.87527 1.88642 1.31378 1.86022 1.23892 1.23553 0.88304 0.96492 0.89525 1.22956 1.00232 1.00172 0.92540 1.22720 0.99149 0.96307 0.97823 1.23346 1.01585 0.97501 0.96901 1.22713 0.99375 0.99650 0.92677 0.95869 0.95271 0.92402 0.92799 0.84791 0.92674 0.91413 0.89317 0.89918 0.88788 0.89136 0.90986 0.89628 0.90075 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.68 9.17 71.98 0.66 -5.02 16 2 C 0.21 10.93 2.47 44.17 0.11 11.04 16 3 H -0.03 -1.51 7.80 -2.38 -0.02 -1.53 16 4 C -0.54 -29.60 8.60 25.60 0.22 -29.38 16 5 H 0.06 3.15 7.62 -2.91 -0.02 3.13 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -52.71 11.31 21.45 0.24 -52.47 16 8 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.67 -28.63 6.05 -467.77 -2.83 -31.46 16 13 C 0.06 2.09 3.13 46.00 0.14 2.24 16 14 H 0.08 2.80 7.20 -2.39 -0.02 2.79 16 15 C 0.03 0.99 7.30 72.38 0.53 1.52 16 16 O -0.38 -12.74 11.33 -148.98 -1.69 -14.43 16 17 C 0.06 1.61 1.24 -10.66 -0.01 1.60 16 18 C -0.12 -2.51 7.67 30.81 0.24 -2.27 16 19 C -0.12 -2.06 7.94 31.25 0.25 -1.81 16 20 C -0.16 -3.41 7.61 30.81 0.23 -3.17 16 21 C -0.11 -3.05 6.02 31.66 0.19 -2.86 16 22 H 0.02 1.01 7.47 -2.38 -0.02 0.99 16 23 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 3.16 6.06 -2.38 -0.01 3.15 16 25 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 26 H 0.33 14.23 7.69 -89.69 -0.69 13.54 16 27 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.07 2.61 7.61 -2.39 -0.02 2.59 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 1.57 8.12 -2.39 -0.02 1.55 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.20 8.14 -2.38 -0.02 1.19 16 33 H 0.07 1.56 8.11 -2.39 -0.02 1.54 16 34 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.08 2.40 8.06 -2.39 -0.02 2.38 16 36 H 0.09 2.37 8.06 -2.39 -0.02 2.35 16 Total: -1.00 -59.80 286.96 1.12 -58.68 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.36 Total: 20.98 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 3.01 Total: -26.87 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -2.59 Total: -83.93 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -1.69 Total: -14.43 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -59.80 1.12 -58.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688298529.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.301 kcal (2) G-P(sol) polarization free energy of solvation -59.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds