Wall clock time and date at job start Mon Mar 30 2020 03:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99878 * 2 1 4 4 C 1.53003 * 109.47602 * 270.00517 * 3 2 1 5 5 C 1.52994 * 109.47375 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47150 * 180.02562 * 5 4 3 7 7 C 1.53777 * 113.61613 * 274.13583 * 6 5 4 8 8 C 1.53954 * 87.02394 * 220.04972 * 7 6 5 9 9 C 1.53781 * 87.10783 * 25.36294 * 8 7 6 10 10 C 1.34779 * 120.00145 * 180.02562 * 2 1 3 11 11 O 1.21687 * 119.99546 * 179.97438 * 10 2 1 12 12 C 1.46373 * 119.99812 * 359.97438 * 10 2 1 13 13 H 1.07989 * 120.00346 * 355.24475 * 12 10 2 14 14 C 1.40051 * 119.99724 * 175.24706 * 12 10 2 15 15 N 1.30678 * 119.99947 * 6.28240 * 14 12 10 16 16 Si 1.86796 * 120.00049 * 186.28096 * 14 12 10 17 17 H 1.48498 * 109.47073 * 94.98156 * 16 14 12 18 18 H 1.48495 * 109.47166 * 214.98234 * 16 14 12 19 19 H 1.48504 * 109.47168 * 334.98369 * 16 14 12 20 20 H 1.08997 * 109.47696 * 89.99817 * 1 2 3 21 21 H 1.09001 * 109.47050 * 209.99724 * 1 2 3 22 22 H 1.08997 * 109.46981 * 329.99173 * 1 2 3 23 23 H 1.08998 * 109.47365 * 150.00104 * 3 2 1 24 24 H 1.09008 * 109.47286 * 30.00604 * 3 2 1 25 25 H 1.08998 * 109.46875 * 300.00356 * 4 3 2 26 26 H 1.09002 * 109.46849 * 59.99872 * 4 3 2 27 27 H 1.09008 * 109.47029 * 300.00339 * 5 4 3 28 28 H 1.08998 * 109.47386 * 59.99713 * 5 4 3 29 29 H 1.09000 * 112.85009 * 45.33741 * 6 5 4 30 30 H 1.09005 * 113.61478 * 334.57081 * 7 6 5 31 31 H 1.08995 * 113.61825 * 105.46992 * 7 6 5 32 32 H 1.09003 * 113.53575 * 270.81491 * 8 7 6 33 33 H 1.08998 * 113.66729 * 139.92843 * 8 7 6 34 34 H 1.09000 * 113.61299 * 220.08962 * 9 8 7 35 35 H 1.09003 * 113.69090 * 89.20558 * 9 8 7 36 36 H 0.96995 * 119.99647 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7106 -1.4425 5 6 3.2168 3.0359 -1.4424 6 6 3.4711 3.4780 -2.8848 7 6 4.7430 2.8709 -3.5001 8 6 4.9915 4.2469 -4.1443 9 6 4.1623 4.8472 -2.9967 10 6 2.1389 -1.1672 -0.0005 11 8 3.3558 -1.1671 -0.0010 12 6 1.4070 -2.4348 -0.0005 13 1 0.3299 -2.4365 0.0774 14 6 2.1037 -3.6456 -0.1016 15 7 3.4101 -3.6521 -0.0721 16 14 1.1654 -5.2511 -0.2783 17 1 1.0538 -5.6034 -1.7166 18 1 1.8899 -6.3296 0.4407 19 1 -0.1935 -5.0966 0.3003 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5139 23 1 3.1499 1.1385 0.5138 24 1 1.6084 2.0284 0.5140 25 1 3.0414 0.9510 -1.9564 26 1 1.4999 1.8409 -1.9562 27 1 2.6273 3.7953 -0.9285 28 1 4.1692 2.9061 -0.9285 29 1 2.5899 3.3807 -3.5190 30 1 5.4950 2.5922 -2.7618 31 1 4.5438 2.0793 -4.2223 32 1 4.5268 4.3592 -5.1239 33 1 6.0377 4.5527 -4.1334 34 1 3.4949 5.6487 -3.3131 35 1 4.7541 5.1106 -2.1200 36 1 3.8925 -4.4907 -0.1418 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688455978.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:57 Heat of formation + Delta-G solvation = -36.102645 kcal Electronic energy + Delta-G solvation = -15525.384965 eV Core-core repulsion = 13009.561709 eV Total energy + Delta-G solvation = -2515.823256 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.88187 -37.62991 -34.38681 -32.42039 -32.33729 -27.91000 -25.98797 -25.53697 -25.00983 -22.80449 -20.85000 -19.38704 -18.85562 -16.42739 -15.59477 -15.55969 -14.81483 -14.48764 -14.21104 -13.89054 -13.61249 -12.61258 -12.35918 -12.33226 -12.12672 -11.63121 -11.50122 -11.33108 -11.16172 -11.00101 -10.94669 -10.82585 -10.41838 -10.31512 -10.16214 -10.04685 -9.88873 -9.81520 -8.81528 -7.52672 -7.13539 -6.16819 -4.60555 3.15051 3.22215 3.25498 4.11801 4.58097 4.60726 4.72574 4.78310 4.84939 4.96156 5.48708 5.54243 5.68592 5.72434 5.80462 5.83937 5.87011 5.94505 6.00496 6.06144 6.16067 6.16707 6.27753 6.34248 6.44924 6.55507 6.58229 6.63776 6.80797 6.96718 7.48132 7.70894 8.19881 8.41516 9.05679 9.48694 10.61667 10.80926 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039211 B = 0.005606 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.910070 B = 4993.039523 C = 5362.484626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.651 5.651 3 C 0.128 3.872 4 C -0.129 4.129 5 C -0.105 4.105 6 C -0.108 4.108 7 C -0.137 4.137 8 C -0.144 4.144 9 C -0.139 4.139 10 C 0.556 3.444 11 O -0.577 6.577 12 C -0.546 4.546 13 H 0.072 0.928 14 C 0.088 3.912 15 N -0.768 5.768 16 Si 0.905 3.095 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.265 1.265 20 H 0.029 0.971 21 H 0.070 0.930 22 H 0.039 0.961 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 11.932 -4.570 12.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.388 5.388 3 C 0.004 3.996 4 C -0.168 4.168 5 C -0.143 4.143 6 C -0.126 4.126 7 C -0.175 4.175 8 C -0.182 4.182 9 C -0.176 4.176 10 C 0.362 3.638 11 O -0.460 6.460 12 C -0.582 4.582 13 H 0.090 0.910 14 C -0.132 4.132 15 N -0.396 5.396 16 Si 0.730 3.270 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.189 1.189 20 H 0.047 0.953 21 H 0.088 0.912 22 H 0.058 0.942 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.420 11.813 -4.553 12.739 hybrid contribution -0.623 -0.782 -0.198 1.019 sum -2.044 11.031 -4.751 12.183 Atomic orbital electron populations 1.21368 0.82412 1.00847 0.99450 1.47983 1.05069 1.05613 1.80184 1.21021 0.97411 0.86055 0.95149 1.21939 0.99530 0.96418 0.98942 1.21507 1.00530 0.97102 0.95191 1.22534 0.97327 0.95559 0.97188 1.22998 0.98044 0.96328 1.00091 1.22847 0.99927 0.97436 0.97964 1.22946 0.99080 0.96813 0.98756 1.18238 0.86982 0.82329 0.76256 1.90586 1.14031 1.86388 1.54996 1.21034 0.94011 0.89455 1.53745 0.90993 1.25734 0.94587 1.00192 0.92684 1.70035 1.07222 1.27112 1.35280 0.86396 0.80310 0.81486 0.78795 1.19822 1.20472 1.18871 0.95268 0.91163 0.94232 0.91238 0.93349 0.91487 0.93010 0.92462 0.91941 0.89664 0.89975 0.91668 0.90607 0.91857 0.92019 0.90270 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.99 10.22 59.85 0.61 2.60 16 2 N -0.65 -15.29 2.87 -183.25 -0.53 -15.82 16 3 C 0.13 2.57 5.45 -4.04 -0.02 2.55 16 4 C -0.13 -2.31 5.53 -26.73 -0.15 -2.46 16 5 C -0.11 -1.51 5.04 -26.74 -0.13 -1.64 16 6 C -0.11 -1.38 3.64 -89.81 -0.33 -1.71 16 7 C -0.14 -1.79 7.65 -25.83 -0.20 -1.98 16 8 C -0.14 -1.55 8.09 -25.83 -0.21 -1.76 16 9 C -0.14 -1.50 7.65 -25.92 -0.20 -1.70 16 10 C 0.56 16.20 7.61 -12.99 -0.10 16.10 16 11 O -0.58 -18.93 14.62 5.20 0.08 -18.86 16 12 C -0.55 -15.61 8.76 -35.63 -0.31 -15.92 16 13 H 0.07 1.88 5.95 -52.49 -0.31 1.57 16 14 C 0.09 2.47 5.49 -17.36 -0.10 2.38 16 15 N -0.77 -23.28 11.85 55.55 0.66 -22.62 16 16 Si 0.91 20.31 29.56 -169.99 -5.03 15.28 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 20 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 21 H 0.07 1.38 6.04 -51.93 -0.31 1.07 16 22 H 0.04 0.63 7.89 -51.93 -0.41 0.22 16 23 H 0.07 1.55 7.42 -51.93 -0.39 1.17 16 24 H 0.05 0.82 7.89 -51.92 -0.41 0.41 16 25 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 28 H 0.06 0.93 7.88 -51.93 -0.41 0.52 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.12 7.92 -51.93 -0.41 0.71 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.27 7.34 8.29 -40.82 -0.34 7.01 16 LS Contribution 296.01 15.07 4.46 4.46 Total: -1.00 -33.44 296.01 -7.50 -40.93 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.01 Total: 0.17 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.13 Total: -3.55 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.13 Total: -38.44 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.08 Total: -18.86 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.44 -7.50 -40.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688455978.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.831 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds