Wall clock time and date at job start Mon Mar 30 2020 03:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99878 * 2 1 4 4 C 1.53003 * 109.47602 * 270.00517 * 3 2 1 5 5 C 1.52994 * 109.47375 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47150 * 180.02562 * 5 4 3 7 7 C 1.53777 * 113.61613 * 274.13583 * 6 5 4 8 8 C 1.53954 * 87.02394 * 220.04972 * 7 6 5 9 9 C 1.53781 * 87.10783 * 25.36294 * 8 7 6 10 10 C 1.34779 * 120.00145 * 180.02562 * 2 1 3 11 11 O 1.21687 * 119.99546 * 179.97438 * 10 2 1 12 12 C 1.46373 * 119.99812 * 359.97438 * 10 2 1 13 13 H 1.07989 * 120.00346 * 355.24475 * 12 10 2 14 14 C 1.40051 * 119.99724 * 175.24706 * 12 10 2 15 15 N 1.30678 * 119.99947 * 6.28240 * 14 12 10 16 16 Si 1.86796 * 120.00049 * 186.28096 * 14 12 10 17 17 H 1.48498 * 109.47073 * 94.98156 * 16 14 12 18 18 H 1.48495 * 109.47166 * 214.98234 * 16 14 12 19 19 H 1.48504 * 109.47168 * 334.98369 * 16 14 12 20 20 H 1.08997 * 109.47696 * 89.99817 * 1 2 3 21 21 H 1.09001 * 109.47050 * 209.99724 * 1 2 3 22 22 H 1.08997 * 109.46981 * 329.99173 * 1 2 3 23 23 H 1.08998 * 109.47365 * 150.00104 * 3 2 1 24 24 H 1.09008 * 109.47286 * 30.00604 * 3 2 1 25 25 H 1.08998 * 109.46875 * 300.00356 * 4 3 2 26 26 H 1.09002 * 109.46849 * 59.99872 * 4 3 2 27 27 H 1.09008 * 109.47029 * 300.00339 * 5 4 3 28 28 H 1.08998 * 109.47386 * 59.99713 * 5 4 3 29 29 H 1.09000 * 112.85009 * 45.33741 * 6 5 4 30 30 H 1.09005 * 113.61478 * 334.57081 * 7 6 5 31 31 H 1.08995 * 113.61825 * 105.46992 * 7 6 5 32 32 H 1.09003 * 113.53575 * 270.81491 * 8 7 6 33 33 H 1.08998 * 113.66729 * 139.92843 * 8 7 6 34 34 H 1.09000 * 113.61299 * 220.08962 * 9 8 7 35 35 H 1.09003 * 113.69090 * 89.20558 * 9 8 7 36 36 H 0.96995 * 119.99647 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7106 -1.4425 5 6 3.2168 3.0359 -1.4424 6 6 3.4711 3.4780 -2.8848 7 6 4.7430 2.8709 -3.5001 8 6 4.9915 4.2469 -4.1443 9 6 4.1623 4.8472 -2.9967 10 6 2.1389 -1.1672 -0.0005 11 8 3.3558 -1.1671 -0.0010 12 6 1.4070 -2.4348 -0.0005 13 1 0.3299 -2.4365 0.0774 14 6 2.1037 -3.6456 -0.1016 15 7 3.4101 -3.6521 -0.0721 16 14 1.1654 -5.2511 -0.2783 17 1 1.0538 -5.6034 -1.7166 18 1 1.8899 -6.3296 0.4407 19 1 -0.1935 -5.0966 0.3003 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5139 23 1 3.1499 1.1385 0.5138 24 1 1.6084 2.0284 0.5140 25 1 3.0414 0.9510 -1.9564 26 1 1.4999 1.8409 -1.9562 27 1 2.6273 3.7953 -0.9285 28 1 4.1692 2.9061 -0.9285 29 1 2.5899 3.3807 -3.5190 30 1 5.4950 2.5922 -2.7618 31 1 4.5438 2.0793 -4.2223 32 1 4.5268 4.3592 -5.1239 33 1 6.0377 4.5527 -4.1334 34 1 3.4949 5.6487 -3.3131 35 1 4.7541 5.1106 -2.1200 36 1 3.8925 -4.4907 -0.1418 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688455978.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:56 Heat of formation + Delta-G solvation = -56.942582 kcal Electronic energy + Delta-G solvation = -15526.288653 eV Core-core repulsion = 13009.561709 eV Total energy + Delta-G solvation = -2516.726944 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.03387 -39.48691 -36.27362 -34.59628 -33.88347 -29.49224 -27.92145 -26.69854 -26.42099 -24.25911 -22.20977 -21.00426 -20.17913 -18.42586 -17.68337 -16.67629 -16.32756 -16.06689 -15.71833 -15.45796 -15.17988 -14.32119 -13.63752 -13.54994 -13.41893 -13.32105 -13.12835 -13.02239 -12.94421 -12.73494 -12.35442 -12.16883 -12.03503 -11.99479 -11.55787 -11.39761 -11.01090 -10.94262 -10.90712 -9.76906 -9.04870 -8.29233 -6.83547 1.38998 1.40385 1.56222 2.24117 2.46724 2.91904 3.60056 3.71130 3.78749 3.84469 3.98312 4.13319 4.34217 4.38901 4.59757 4.69348 4.73432 4.76505 4.83616 4.88150 4.92945 4.98433 5.01689 5.06847 5.09063 5.15046 5.31285 5.37973 5.41952 5.47447 5.66410 5.79462 6.16668 6.45471 6.88011 7.43857 8.48631 8.68291 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039211 B = 0.005606 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.910070 B = 4993.039523 C = 5362.484626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.655 5.655 3 C 0.125 3.875 4 C -0.116 4.116 5 C -0.097 4.097 6 C -0.111 4.111 7 C -0.153 4.153 8 C -0.134 4.134 9 C -0.127 4.127 10 C 0.536 3.464 11 O -0.632 6.632 12 C -0.573 4.573 13 H 0.093 0.907 14 C 0.027 3.973 15 N -0.824 5.824 16 Si 0.996 3.004 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.245 1.245 20 H 0.041 0.959 21 H 0.062 0.938 22 H 0.080 0.920 23 H 0.035 0.965 24 H 0.091 0.909 25 H 0.019 0.981 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.566 12.985 -4.975 14.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.391 5.391 3 C 0.001 3.999 4 C -0.155 4.155 5 C -0.135 4.135 6 C -0.130 4.130 7 C -0.191 4.191 8 C -0.172 4.172 9 C -0.165 4.165 10 C 0.342 3.658 11 O -0.519 6.519 12 C -0.609 4.609 13 H 0.111 0.889 14 C -0.187 4.187 15 N -0.453 5.453 16 Si 0.815 3.185 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.168 1.168 20 H 0.060 0.940 21 H 0.080 0.920 22 H 0.099 0.901 23 H 0.054 0.946 24 H 0.109 0.891 25 H 0.038 0.962 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.773 12.921 -4.956 14.344 hybrid contribution 0.082 -1.044 -0.049 1.049 sum -3.690 11.877 -5.005 13.406 Atomic orbital electron populations 1.21570 0.79465 1.02508 1.00746 1.47912 1.07094 1.05283 1.78831 1.21223 0.96346 0.85656 0.96657 1.21783 0.99861 0.96947 0.96939 1.21446 0.99732 0.95604 0.96709 1.22573 0.97316 0.97140 0.95942 1.23066 0.98390 0.97588 1.00031 1.22830 1.00787 0.95082 0.98477 1.22896 0.98862 0.95883 0.98809 1.18681 0.86667 0.84411 0.76061 1.90534 1.16312 1.87685 1.57392 1.21573 0.95206 0.90046 1.54053 0.88886 1.27028 0.95508 1.04876 0.91327 1.70213 1.09791 1.28753 1.36562 0.85033 0.79116 0.75153 0.79162 1.18915 1.19757 1.16826 0.94021 0.91964 0.90118 0.94628 0.89087 0.96216 0.91571 0.89839 0.93202 0.89202 0.91516 0.93054 0.89401 0.90938 0.90104 0.89930 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.61 10.22 127.77 1.31 4.92 16 2 N -0.66 -30.86 2.87 -851.89 -2.45 -33.31 16 3 C 0.12 5.00 5.45 86.38 0.47 5.47 16 4 C -0.12 -4.19 5.53 30.59 0.17 -4.02 16 5 C -0.10 -2.69 5.04 30.59 0.15 -2.54 16 6 C -0.11 -2.72 3.64 -10.27 -0.04 -2.76 16 7 C -0.15 -4.06 7.65 31.18 0.24 -3.82 16 8 C -0.13 -2.66 8.09 31.18 0.25 -2.41 16 9 C -0.13 -2.44 7.65 31.12 0.24 -2.20 16 10 C 0.54 32.27 7.61 86.36 0.66 32.92 16 11 O -0.63 -43.82 14.62 -4.31 -0.06 -43.89 16 12 C -0.57 -33.17 8.76 24.83 0.22 -32.95 16 13 H 0.09 4.80 5.95 -2.92 -0.02 4.79 16 14 C 0.03 1.56 5.49 85.30 0.47 2.03 16 15 N -0.82 -51.72 11.85 21.84 0.26 -51.46 16 16 Si 1.00 41.63 29.56 68.60 2.03 43.66 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 19 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 20 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.06 2.34 6.04 -2.39 -0.01 2.32 16 22 H 0.08 2.25 7.89 -2.39 -0.02 2.23 16 23 H 0.04 1.65 7.42 -2.39 -0.02 1.64 16 24 H 0.09 2.86 7.89 -2.38 -0.02 2.84 16 25 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 27 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.05 1.51 7.88 -2.39 -0.02 1.49 16 29 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.07 1.94 7.92 -2.38 -0.02 1.92 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.54 8.10 -2.39 -0.02 1.52 16 36 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 Total: -1.00 -76.78 296.01 4.94 -71.84 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 1.03 Total: 18.51 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 4.13 Total: -5.35 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -2.19 Total: -84.77 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.06 Total: -43.89 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -76.78 4.94 -71.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688455978.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.896 kcal (2) G-P(sol) polarization free energy of solvation -76.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds