Wall clock time and date at job start Mon Mar 30 2020 02:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47076 * 2 1 4 4 C 1.53005 * 109.47233 * 239.99991 * 2 1 3 5 5 C 1.50695 * 109.47088 * 175.00020 * 4 2 1 6 6 H 1.07995 * 120.00496 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99572 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00327 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 59.99744 * 9 7 5 11 11 H 1.48503 * 109.47261 * 299.99924 * 9 7 5 12 12 H 1.48500 * 109.47454 * 179.97438 * 9 7 5 13 13 N 1.46898 * 109.47106 * 120.00190 * 2 1 3 14 14 C 1.46900 * 110.99928 * 274.99778 * 13 2 1 15 15 C 1.52998 * 109.47013 * 180.02562 * 14 13 2 16 16 C 1.52998 * 119.81015 * 111.02547 * 15 14 13 17 17 C 1.54504 * 122.36757 * 183.40604 * 15 14 13 18 18 H 1.09000 * 122.36482 * 0.54446 * 17 15 14 19 19 C 1.54484 * 104.06851 * 136.77936 * 17 15 14 20 20 O 1.44422 * 104.79928 * 23.97811 * 19 17 15 21 21 C 1.44429 * 105.27955 * 319.49031 * 20 19 17 22 22 H 1.09000 * 109.47793 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47028 * 299.99847 * 1 2 3 24 24 H 1.09000 * 109.47484 * 59.99824 * 1 2 3 25 25 H 1.09002 * 109.46935 * 54.99986 * 4 2 1 26 26 H 1.08998 * 109.47061 * 295.00779 * 4 2 1 27 27 H 0.97006 * 119.99995 * 359.97438 * 8 7 5 28 28 H 1.00904 * 111.00108 * 38.95357 * 13 2 1 29 29 H 1.08990 * 109.47263 * 299.99959 * 14 13 2 30 30 H 1.08999 * 109.46956 * 60.00555 * 14 13 2 31 31 H 1.09004 * 117.43100 * 219.98501 * 16 15 14 32 32 H 1.08997 * 117.43429 * 4.62985 * 16 15 14 33 33 H 1.09001 * 110.37129 * 265.15097 * 19 17 15 34 34 H 1.09003 * 110.46567 * 142.85446 * 19 17 15 35 35 H 1.08996 * 110.36878 * 281.68359 * 21 20 19 36 36 H 1.09001 * 110.46675 * 159.39121 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5418 -0.6149 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2302 -1.1927 -2.3584 8 7 3.5762 -1.8361 -3.3006 9 14 6.0920 -1.0615 -2.4367 10 1 6.6837 -1.6885 -1.2276 11 1 6.4854 0.3692 -2.4952 12 1 6.5870 -1.7614 -3.6493 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2225 2.3468 15 6 2.5962 -0.5330 3.5741 16 6 3.9803 -0.2110 4.1410 17 6 2.7056 0.1280 4.9663 18 1 2.4140 1.1629 5.1455 19 6 2.1598 -0.9445 5.9351 20 8 2.3463 -2.1974 5.2413 21 6 1.9973 -1.9267 3.8663 22 1 -0.3635 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.6054 -0.2617 -2.1370 26 1 1.7515 -1.7715 -1.2057 27 1 2.6094 -1.9045 -3.2597 28 1 1.4495 -1.4980 1.4100 29 1 2.7588 1.0461 2.1182 30 1 1.0870 0.6162 2.5525 31 1 4.5893 -1.0474 4.4843 32 1 4.5296 0.6137 3.6870 33 1 1.1015 -0.7741 6.1326 34 1 2.7249 -0.9391 6.8672 35 1 0.9141 -1.9069 3.7466 36 1 2.4375 -2.6748 3.2069 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689263067.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:19 Heat of formation + Delta-G solvation = -24.008293 kcal Electronic energy + Delta-G solvation = -15816.863425 eV Core-core repulsion = 13301.564619 eV Total energy + Delta-G solvation = -2515.298806 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.32388 -36.83974 -34.59560 -32.85689 -30.59746 -28.25442 -26.91939 -25.73837 -24.73654 -22.74679 -20.77695 -19.98403 -19.20032 -16.81307 -16.25735 -15.87101 -15.23612 -14.78520 -14.35465 -13.72644 -13.55007 -13.29533 -13.02701 -12.77196 -12.45897 -12.10055 -11.88693 -11.45833 -11.36341 -11.05035 -10.87270 -10.69089 -10.33790 -10.05662 -10.02103 -9.99755 -9.59764 -9.39448 -8.43076 -8.18226 -7.62106 -6.18287 -3.83064 3.44829 3.52771 3.56396 3.74091 3.86635 4.44087 4.65182 4.68139 4.78884 4.84577 5.07139 5.28207 5.33670 5.52070 5.57121 5.58737 5.63375 5.68525 5.81516 5.84564 5.88511 5.90800 5.92517 6.09145 6.23582 6.34043 6.49965 6.69006 6.86710 7.32283 7.43498 7.85060 8.01018 8.43518 8.68887 9.07476 9.85366 11.22194 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028050 B = 0.006960 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.981840 B = 4022.007370 C = 4594.447477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.096 3.904 3 H 0.065 0.935 4 C 0.020 3.980 5 C -0.569 4.569 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.924 5.924 9 Si 1.067 2.933 10 H -0.289 1.289 11 H -0.291 1.291 12 H -0.286 1.286 13 N -0.659 5.659 14 C 0.108 3.892 15 C -0.151 4.151 16 C -0.118 4.118 17 C -0.213 4.213 18 H 0.120 0.880 19 C 0.073 3.927 20 O -0.375 6.375 21 C 0.078 3.922 22 H 0.050 0.950 23 H 0.038 0.962 24 H 0.057 0.943 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.265 0.735 28 H 0.329 0.671 29 H 0.073 0.927 30 H 0.022 0.978 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 4.043 15.790 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.013 4.013 3 H 0.084 0.916 4 C -0.017 4.017 5 C -0.607 4.607 6 H 0.070 0.930 7 C -0.195 4.195 8 N -0.562 5.562 9 Si 0.897 3.103 10 H -0.216 1.216 11 H -0.218 1.218 12 H -0.211 1.211 13 N -0.288 5.288 14 C -0.022 4.022 15 C -0.152 4.152 16 C -0.155 4.155 17 C -0.232 4.232 18 H 0.138 0.862 19 C -0.004 4.004 20 O -0.294 6.294 21 C 0.001 3.999 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.075 0.925 28 H 0.147 0.853 29 H 0.092 0.908 30 H 0.040 0.960 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.416 3.492 14.811 15.407 hybrid contribution -2.491 0.841 1.060 2.834 sum -4.907 4.332 15.870 17.167 Atomic orbital electron populations 1.22585 0.99520 1.01217 1.00764 1.21640 0.89703 0.98112 0.91884 0.91644 1.19230 0.97396 0.94731 0.90357 1.21917 0.91534 1.37222 1.10050 0.93049 1.25764 1.06602 0.94075 0.93041 1.70791 1.10007 1.40917 1.34446 0.83564 0.74939 0.75964 0.75859 1.21565 1.21801 1.21122 1.60463 1.57687 1.08439 1.02253 1.21231 0.97934 0.94832 0.88175 1.23146 1.01307 0.96691 0.94062 1.23283 0.89633 1.02953 0.99650 1.24564 1.04832 0.99810 0.93988 0.86220 1.22861 0.99566 0.82486 0.95463 1.89148 1.88900 1.30685 1.20628 1.22841 0.98556 0.95530 0.82961 0.93040 0.94244 0.92437 0.97474 0.97460 0.92469 0.85315 0.90842 0.95997 0.88535 0.87654 0.91857 0.89085 0.91978 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.16 37.15 0.34 -2.68 16 2 C 0.10 1.94 2.53 -67.71 -0.17 1.76 16 3 H 0.07 1.36 7.80 -51.93 -0.40 0.96 16 4 C 0.02 0.51 3.96 -27.88 -0.11 0.40 16 5 C -0.57 -16.32 8.84 -34.44 -0.30 -16.62 16 6 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.01 0.21 5.46 -17.82 -0.10 0.11 16 8 N -0.92 -28.94 13.65 55.43 0.76 -28.18 16 9 Si 1.07 26.26 29.90 -169.99 -5.08 21.18 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 N -0.66 -12.22 5.90 -106.73 -0.63 -12.85 16 14 C 0.11 1.66 5.89 -3.83 -0.02 1.64 16 15 C -0.15 -2.11 2.75 -152.94 -0.42 -2.53 16 16 C -0.12 -1.57 9.79 -25.35 -0.25 -1.82 16 17 C -0.21 -2.47 7.28 -87.67 -0.64 -3.10 16 18 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 19 C 0.07 0.81 7.55 37.94 0.29 1.09 16 20 O -0.38 -5.29 11.32 -35.23 -0.40 -5.69 16 21 C 0.08 1.07 6.14 37.94 0.23 1.30 16 22 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 23 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 26 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 27 H 0.27 8.26 7.22 -40.82 -0.29 7.96 16 28 H 0.33 5.69 7.47 -39.29 -0.29 5.40 16 29 H 0.07 1.19 7.96 -51.93 -0.41 0.77 16 30 H 0.02 0.31 7.44 -51.93 -0.39 -0.07 16 31 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 32 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 293.74 15.07 4.43 4.43 Total: -1.00 -31.56 293.74 -8.10 -39.66 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.01 Total: 1.90 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -1.15 Total: -20.44 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.13 Total: -41.03 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.40 Total: -5.69 kcal Atomic # 14 Polarization: 26.26 SS G_CDS: -5.08 Total: 21.18 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.56 -8.10 -39.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689263067.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.650 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds