Wall clock time and date at job start Mon Mar 30 2020 02:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47076 * 2 1 4 4 C 1.53005 * 109.47233 * 239.99991 * 2 1 3 5 5 C 1.50695 * 109.47088 * 175.00020 * 4 2 1 6 6 H 1.07995 * 120.00496 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99572 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00327 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 59.99744 * 9 7 5 11 11 H 1.48503 * 109.47261 * 299.99924 * 9 7 5 12 12 H 1.48500 * 109.47454 * 179.97438 * 9 7 5 13 13 N 1.46898 * 109.47106 * 120.00190 * 2 1 3 14 14 C 1.46900 * 110.99928 * 274.99778 * 13 2 1 15 15 C 1.52998 * 109.47013 * 180.02562 * 14 13 2 16 16 C 1.52998 * 119.81015 * 111.02547 * 15 14 13 17 17 C 1.54504 * 122.36757 * 183.40604 * 15 14 13 18 18 H 1.09000 * 122.36482 * 0.54446 * 17 15 14 19 19 C 1.54484 * 104.06851 * 136.77936 * 17 15 14 20 20 O 1.44422 * 104.79928 * 23.97811 * 19 17 15 21 21 C 1.44429 * 105.27955 * 319.49031 * 20 19 17 22 22 H 1.09000 * 109.47793 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47028 * 299.99847 * 1 2 3 24 24 H 1.09000 * 109.47484 * 59.99824 * 1 2 3 25 25 H 1.09002 * 109.46935 * 54.99986 * 4 2 1 26 26 H 1.08998 * 109.47061 * 295.00779 * 4 2 1 27 27 H 0.97006 * 119.99995 * 359.97438 * 8 7 5 28 28 H 1.00904 * 111.00108 * 38.95357 * 13 2 1 29 29 H 1.08990 * 109.47263 * 299.99959 * 14 13 2 30 30 H 1.08999 * 109.46956 * 60.00555 * 14 13 2 31 31 H 1.09004 * 117.43100 * 219.98501 * 16 15 14 32 32 H 1.08997 * 117.43429 * 4.62985 * 16 15 14 33 33 H 1.09001 * 110.37129 * 265.15097 * 19 17 15 34 34 H 1.09003 * 110.46567 * 142.85446 * 19 17 15 35 35 H 1.08996 * 110.36878 * 281.68359 * 21 20 19 36 36 H 1.09001 * 110.46675 * 159.39121 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5418 -0.6149 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2302 -1.1927 -2.3584 8 7 3.5762 -1.8361 -3.3006 9 14 6.0920 -1.0615 -2.4367 10 1 6.6837 -1.6885 -1.2276 11 1 6.4854 0.3692 -2.4952 12 1 6.5870 -1.7614 -3.6493 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2225 2.3468 15 6 2.5962 -0.5330 3.5741 16 6 3.9803 -0.2110 4.1410 17 6 2.7056 0.1280 4.9663 18 1 2.4140 1.1629 5.1455 19 6 2.1598 -0.9445 5.9351 20 8 2.3463 -2.1974 5.2413 21 6 1.9973 -1.9267 3.8663 22 1 -0.3635 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.6054 -0.2617 -2.1370 26 1 1.7515 -1.7715 -1.2057 27 1 2.6094 -1.9045 -3.2597 28 1 1.4495 -1.4980 1.4100 29 1 2.7588 1.0461 2.1182 30 1 1.0870 0.6162 2.5525 31 1 4.5893 -1.0474 4.4843 32 1 4.5296 0.6137 3.6870 33 1 1.1015 -0.7741 6.1326 34 1 2.7249 -0.9391 6.8672 35 1 0.9141 -1.9069 3.7466 36 1 2.4375 -2.6748 3.2069 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689263067.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:19 Heat of formation + Delta-G solvation = -45.116953 kcal Electronic energy + Delta-G solvation = -15817.778765 eV Core-core repulsion = 13301.564619 eV Total energy + Delta-G solvation = -2516.214146 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.33525 -38.35955 -35.82898 -34.85009 -32.07118 -29.34989 -28.76559 -26.73954 -26.07227 -24.83795 -21.87534 -21.45567 -20.31821 -18.86415 -17.46282 -16.90240 -16.27922 -16.18815 -15.70162 -15.62684 -15.18314 -14.72352 -14.51420 -13.97952 -13.43973 -13.43479 -13.25071 -13.19869 -12.98797 -12.50733 -12.37434 -12.28908 -11.94219 -11.92613 -11.45429 -11.03777 -10.99687 -10.60382 -10.46577 -10.41208 -9.05113 -8.55101 -6.20215 1.53424 1.62652 1.81171 2.43732 2.62802 2.89226 3.22543 3.34263 3.63206 3.75526 3.83574 3.92482 4.11396 4.26638 4.34949 4.42271 4.46240 4.59074 4.62389 4.73785 4.78279 4.82469 4.87144 4.89116 5.01957 5.09775 5.13394 5.17877 5.24969 5.47412 5.73784 6.13885 6.31471 6.36995 6.61280 6.76178 7.56728 8.85930 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028050 B = 0.006960 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.981840 B = 4022.007370 C = 4594.447477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 H 0.058 0.942 4 C 0.021 3.979 5 C -0.574 4.574 6 H 0.047 0.953 7 C -0.049 4.049 8 N -0.950 5.950 9 Si 1.114 2.886 10 H -0.275 1.275 11 H -0.271 1.271 12 H -0.287 1.287 13 N -0.679 5.679 14 C 0.116 3.884 15 C -0.172 4.172 16 C -0.134 4.134 17 C -0.181 4.181 18 H 0.143 0.857 19 C 0.067 3.933 20 O -0.396 6.396 21 C 0.080 3.920 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.056 0.944 25 H -0.012 1.012 26 H -0.014 1.014 27 H 0.252 0.748 28 H 0.335 0.665 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 5.152 17.795 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.005 4.005 3 H 0.077 0.923 4 C -0.017 4.017 5 C -0.613 4.613 6 H 0.065 0.935 7 C -0.244 4.244 8 N -0.589 5.589 9 Si 0.937 3.063 10 H -0.201 1.201 11 H -0.196 1.196 12 H -0.212 1.212 13 N -0.310 5.310 14 C -0.013 4.013 15 C -0.173 4.173 16 C -0.171 4.171 17 C -0.200 4.200 18 H 0.160 0.840 19 C -0.009 4.009 20 O -0.315 6.315 21 C 0.004 3.996 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.006 0.994 26 H 0.004 0.996 27 H 0.061 0.939 28 H 0.154 0.846 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.093 0.907 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.610 4.615 16.843 17.658 hybrid contribution -2.454 0.496 0.490 2.551 sum -5.064 5.111 17.333 18.767 Atomic orbital electron populations 1.22430 0.96447 1.01879 1.02190 1.21326 0.92118 0.96695 0.90357 0.92344 1.19172 0.95944 0.93925 0.92609 1.22265 0.93298 1.36247 1.09467 0.93475 1.27245 1.10873 0.93483 0.92802 1.70925 1.09350 1.42911 1.35748 0.82962 0.69982 0.77178 0.76216 1.20101 1.19602 1.21249 1.60284 1.58272 1.09451 1.02981 1.21155 0.98755 0.93989 0.87390 1.23095 1.01965 0.97276 0.94980 1.23323 0.89954 1.02941 1.00887 1.24691 1.02207 1.00977 0.92131 0.83967 1.23146 1.01149 0.80991 0.95614 1.89128 1.89171 1.32425 1.20744 1.22768 0.99128 0.94908 0.82842 0.92787 0.91329 0.92443 0.99414 0.99586 0.93869 0.84642 0.91894 0.94058 0.89436 0.87547 0.89810 0.87269 0.90667 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.36 9.16 71.98 0.66 -4.70 16 2 C 0.10 4.18 2.53 44.92 0.11 4.29 16 3 H 0.06 2.39 7.80 -2.39 -0.02 2.38 16 4 C 0.02 1.09 3.96 29.85 0.12 1.21 16 5 C -0.57 -33.40 8.84 25.60 0.23 -33.17 16 6 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 7 C -0.05 -2.91 5.46 84.66 0.46 -2.44 16 8 N -0.95 -60.77 13.65 21.45 0.29 -60.48 16 9 Si 1.11 52.78 29.90 68.60 2.05 54.84 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 13 N -0.68 -24.71 5.90 -491.59 -2.90 -27.61 16 14 C 0.12 3.36 5.89 86.30 0.51 3.87 16 15 C -0.17 -4.50 2.75 -51.17 -0.14 -4.64 16 16 C -0.13 -3.38 9.79 31.49 0.31 -3.07 16 17 C -0.18 -3.64 7.28 -8.88 -0.06 -3.70 16 18 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 19 C 0.07 1.26 7.55 72.49 0.55 1.81 16 20 O -0.40 -10.45 11.32 -148.98 -1.69 -12.14 16 21 C 0.08 2.10 6.14 72.49 0.44 2.55 16 22 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 23 H 0.07 1.77 7.45 -2.38 -0.02 1.75 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 26 H -0.01 -0.79 8.01 -2.39 -0.02 -0.81 16 27 H 0.25 16.27 7.22 -92.70 -0.67 15.60 16 28 H 0.34 11.36 7.47 -89.69 -0.67 10.69 16 29 H 0.06 1.94 7.96 -2.39 -0.02 1.92 16 30 H 0.04 1.04 7.44 -2.39 -0.02 1.03 16 31 H 0.09 2.33 8.07 -2.38 -0.02 2.31 16 32 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -68.25 293.74 1.41 -66.84 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.47 Total: 16.55 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 3.18 Total: -38.00 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -2.61 Total: -88.09 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -1.69 Total: -12.14 kcal Atomic # 14 Polarization: 52.78 SS G_CDS: 2.05 Total: 54.84 kcal Total: -68.25 1.41 -66.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689263067.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.727 kcal (2) G-P(sol) polarization free energy of solvation -68.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds