Wall clock time and date at job start Mon Mar 30 2020 03:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47410 * 2 1 4 4 C 1.50707 * 109.46865 * 240.00176 * 2 1 3 5 5 H 1.07997 * 119.99982 * 240.00181 * 4 2 1 6 6 C 1.37872 * 119.99956 * 59.99859 * 4 2 1 7 7 N 1.31511 * 120.00179 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99950 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46705 * 90.00149 * 8 6 4 10 10 H 1.48504 * 109.47130 * 210.00103 * 8 6 4 11 11 H 1.48499 * 109.47220 * 330.00240 * 8 6 4 12 12 N 1.46902 * 109.47550 * 120.00285 * 2 1 3 13 13 C 1.46323 * 110.99539 * 310.62144 * 12 2 1 14 14 C 1.53512 * 107.52208 * 176.76880 * 13 12 2 15 15 C 1.52383 * 107.78621 * 68.18636 * 14 13 12 16 16 C 1.51688 * 112.45484 * 303.63563 * 15 14 13 17 17 H 1.09003 * 110.00817 * 266.06130 * 16 15 14 18 18 C 1.55548 * 107.56464 * 146.45991 * 16 15 14 19 19 O 1.44565 * 105.00450 * 217.31833 * 18 16 15 20 20 C 1.45073 * 104.71232 * 39.69273 * 19 18 16 21 21 C 1.43009 * 111.00230 * 180.49681 * 12 2 1 22 22 H 1.09001 * 105.65857 * 278.06178 * 21 12 2 23 23 H 1.08994 * 109.47618 * 186.38419 * 1 2 3 24 24 H 1.09005 * 109.46479 * 306.37820 * 1 2 3 25 25 H 1.08999 * 109.47527 * 66.37424 * 1 2 3 26 26 H 0.97003 * 120.00298 * 179.97438 * 7 6 4 27 27 H 1.08993 * 109.84904 * 57.26127 * 13 12 2 28 28 H 1.09002 * 109.90120 * 296.29932 * 13 12 2 29 29 H 1.09002 * 109.79554 * 308.61642 * 14 13 12 30 30 H 1.08999 * 109.79831 * 187.75839 * 14 13 12 31 31 H 1.08996 * 108.88094 * 182.87122 * 15 14 13 32 32 H 1.09001 * 108.80561 * 64.34795 * 15 14 13 33 33 H 1.08995 * 110.33943 * 98.43427 * 18 16 15 34 34 H 1.09003 * 110.33405 * 336.19642 * 18 16 15 35 35 H 1.09002 * 110.70234 * 75.16122 * 20 19 18 36 36 H 1.09003 * 110.70292 * 198.21030 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3223 -1.1195 -4.0081 9 1 1.3445 -2.1615 -4.4124 10 1 2.4870 -0.1401 -5.1121 11 1 3.6306 -1.7566 -3.7121 12 7 2.0197 -0.6925 1.1994 13 6 1.3560 -0.1900 2.4027 14 6 1.8637 -1.0189 3.5909 15 6 3.3332 -0.6762 3.8035 16 6 4.1682 -0.9079 2.5585 17 1 4.6114 -1.9033 2.5866 18 6 5.2903 0.1691 2.5388 19 8 5.4416 0.5265 1.1462 20 6 4.0881 0.5587 0.6249 21 6 3.4493 -0.7016 1.2382 22 1 3.7558 -1.5279 0.5968 23 1 -0.3634 -1.0212 0.1143 24 1 -0.3632 0.6096 0.8275 25 1 -0.3634 0.4118 -0.9415 26 1 0.7093 1.1619 -3.4844 27 1 0.2766 -0.3052 2.3054 28 1 1.6040 0.8609 2.5518 29 1 1.7605 -2.0815 3.3707 30 1 1.2933 -0.7695 4.4856 31 1 3.7259 -1.2933 4.6116 32 1 3.4114 0.3724 4.0907 33 1 6.2206 -0.2460 2.9265 34 1 4.9905 1.0393 3.1227 35 1 3.5677 1.4562 0.9594 36 1 4.0929 0.5008 -0.4635 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690722816.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:33 Heat of formation + Delta-G solvation = -39.772025 kcal Electronic energy + Delta-G solvation = -16923.801811 eV Core-core repulsion = 14407.819439 eV Total energy + Delta-G solvation = -2515.982373 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.03703 -36.60095 -34.48297 -32.20827 -30.72040 -29.01370 -27.03832 -25.20889 -24.09243 -22.65057 -21.70584 -19.74445 -17.95688 -16.52211 -16.14030 -15.64111 -14.91266 -14.59855 -14.17870 -13.85196 -13.18938 -13.04410 -12.96814 -12.57637 -12.04662 -11.69809 -11.44808 -10.99529 -10.88936 -10.81431 -10.60959 -10.35692 -10.26669 -10.20048 -10.05584 -9.76545 -9.51140 -9.35114 -8.93346 -8.40963 -6.98714 -6.02570 -4.07776 3.31205 3.37879 3.41838 4.35170 4.44708 4.87313 4.96960 5.08205 5.25348 5.29325 5.43886 5.53756 5.66433 5.78493 5.90618 5.95424 6.00746 6.11705 6.22493 6.24147 6.38216 6.48726 6.60893 6.74723 6.78998 6.83245 7.01059 7.10627 7.25775 7.47663 7.78126 7.83781 8.30678 8.34064 8.63479 8.99539 9.57718 11.03091 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030830 B = 0.010336 C = 0.008590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.980046 B = 2708.261968 C = 3258.928732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.214 3.786 3 H 0.005 0.995 4 C -0.502 4.502 5 H 0.062 0.938 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.534 5.534 13 C 0.059 3.941 14 C -0.118 4.118 15 C -0.109 4.109 16 C -0.116 4.116 17 H 0.080 0.920 18 C 0.045 3.955 19 O -0.385 6.385 20 C 0.026 3.974 21 C 0.090 3.910 22 H 0.073 0.927 23 H 0.034 0.966 24 H 0.009 0.991 25 H 0.089 0.911 26 H 0.261 0.739 27 H 0.077 0.923 28 H 0.018 0.982 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 -1.548 10.396 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.109 3.891 3 H 0.023 0.977 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.259 5.259 13 C -0.069 4.069 14 C -0.155 4.155 15 C -0.146 4.146 16 C -0.136 4.136 17 H 0.099 0.901 18 C -0.032 4.032 19 O -0.303 6.303 20 C -0.052 4.052 21 C -0.021 4.021 22 H 0.091 0.909 23 H 0.053 0.947 24 H 0.028 0.972 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.037 0.963 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.355 -1.837 10.095 10.795 hybrid contribution 0.315 0.372 -0.693 0.848 sum 3.670 -1.465 9.401 10.198 Atomic orbital electron populations 1.21907 0.97751 0.98747 1.01152 1.19301 0.92234 0.92107 0.85442 0.97729 1.21137 1.30971 1.12336 0.89621 0.91941 1.24921 0.95198 0.95045 0.98991 1.69878 1.36846 1.22916 1.23491 0.86554 0.79337 0.79354 0.82562 1.20694 1.21336 1.19811 1.59876 1.03315 1.59259 1.03439 1.22017 0.99413 0.95168 0.90260 1.21579 0.94926 1.01311 0.97722 1.21194 0.95993 1.01025 0.96434 1.21950 0.96511 0.99815 0.95279 0.90133 1.23882 0.98412 0.96021 0.84910 1.89237 1.27763 1.90893 1.22456 1.24355 0.80961 0.98078 1.01819 1.21040 0.88551 0.98268 0.94196 0.90931 0.94728 0.97248 0.89262 0.92932 0.90458 0.96345 0.91052 0.92193 0.92436 0.92554 0.90071 0.92914 0.93500 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.19 37.16 0.30 -2.97 16 2 C 0.21 5.24 1.67 -68.86 -0.12 5.12 16 3 H 0.01 0.14 6.38 -51.93 -0.33 -0.19 16 4 C -0.50 -13.35 6.80 -34.44 -0.23 -13.58 16 5 H 0.06 1.69 6.78 -52.49 -0.36 1.33 16 6 C 0.06 1.61 5.29 -17.82 -0.09 1.52 16 7 N -0.89 -24.90 11.29 55.43 0.63 -24.27 16 8 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.53 -11.27 4.29 -223.32 -0.96 -12.23 16 13 C 0.06 1.07 5.04 -3.87 -0.02 1.05 16 14 C -0.12 -1.72 6.14 -26.78 -0.16 -1.88 16 15 C -0.11 -1.49 5.38 -27.71 -0.15 -1.64 16 16 C -0.12 -1.85 3.39 -90.57 -0.31 -2.16 16 17 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 18 C 0.05 0.70 7.12 38.51 0.27 0.97 16 19 O -0.39 -7.53 11.70 -35.23 -0.41 -7.95 16 20 C 0.03 0.54 5.54 37.70 0.21 0.74 16 21 C 0.09 1.79 2.30 -69.87 -0.16 1.63 16 22 H 0.07 1.59 7.04 -51.93 -0.37 1.22 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.01 0.19 6.67 -51.93 -0.35 -0.16 16 25 H 0.09 2.35 5.93 -51.93 -0.31 2.04 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.08 1.40 6.17 -51.93 -0.32 1.08 16 28 H 0.02 0.34 8.11 -51.93 -0.42 -0.08 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.75 7.08 -51.93 -0.37 0.39 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.77 7.15 -51.93 -0.37 0.39 16 35 H 0.05 1.00 7.39 -51.93 -0.38 0.61 16 36 H 0.12 2.71 6.87 -51.93 -0.36 2.35 16 LS Contribution 267.73 15.07 4.03 4.03 Total: -1.00 -27.68 267.73 -7.79 -35.46 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.60 Total: -0.03 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -0.46 Total: -11.20 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.33 Total: -36.50 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.41 Total: -7.95 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.68 -7.79 -35.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690722816.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.308 kcal (2) G-P(sol) polarization free energy of solvation -27.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds