Wall clock time and date at job start Mon Mar 30 2020 03:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47410 * 2 1 4 4 C 1.50707 * 109.46865 * 240.00176 * 2 1 3 5 5 H 1.07997 * 119.99982 * 240.00181 * 4 2 1 6 6 C 1.37872 * 119.99956 * 59.99859 * 4 2 1 7 7 N 1.31511 * 120.00179 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99950 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46705 * 90.00149 * 8 6 4 10 10 H 1.48504 * 109.47130 * 210.00103 * 8 6 4 11 11 H 1.48499 * 109.47220 * 330.00240 * 8 6 4 12 12 N 1.46902 * 109.47550 * 120.00285 * 2 1 3 13 13 C 1.46323 * 110.99539 * 310.62144 * 12 2 1 14 14 C 1.53512 * 107.52208 * 176.76880 * 13 12 2 15 15 C 1.52383 * 107.78621 * 68.18636 * 14 13 12 16 16 C 1.51688 * 112.45484 * 303.63563 * 15 14 13 17 17 H 1.09003 * 110.00817 * 266.06130 * 16 15 14 18 18 C 1.55548 * 107.56464 * 146.45991 * 16 15 14 19 19 O 1.44565 * 105.00450 * 217.31833 * 18 16 15 20 20 C 1.45073 * 104.71232 * 39.69273 * 19 18 16 21 21 C 1.43009 * 111.00230 * 180.49681 * 12 2 1 22 22 H 1.09001 * 105.65857 * 278.06178 * 21 12 2 23 23 H 1.08994 * 109.47618 * 186.38419 * 1 2 3 24 24 H 1.09005 * 109.46479 * 306.37820 * 1 2 3 25 25 H 1.08999 * 109.47527 * 66.37424 * 1 2 3 26 26 H 0.97003 * 120.00298 * 179.97438 * 7 6 4 27 27 H 1.08993 * 109.84904 * 57.26127 * 13 12 2 28 28 H 1.09002 * 109.90120 * 296.29932 * 13 12 2 29 29 H 1.09002 * 109.79554 * 308.61642 * 14 13 12 30 30 H 1.08999 * 109.79831 * 187.75839 * 14 13 12 31 31 H 1.08996 * 108.88094 * 182.87122 * 15 14 13 32 32 H 1.09001 * 108.80561 * 64.34795 * 15 14 13 33 33 H 1.08995 * 110.33943 * 98.43427 * 18 16 15 34 34 H 1.09003 * 110.33405 * 336.19642 * 18 16 15 35 35 H 1.09002 * 110.70234 * 75.16122 * 20 19 18 36 36 H 1.09003 * 110.70292 * 198.21030 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3223 -1.1195 -4.0081 9 1 1.3445 -2.1615 -4.4124 10 1 2.4870 -0.1401 -5.1121 11 1 3.6306 -1.7566 -3.7121 12 7 2.0197 -0.6925 1.1994 13 6 1.3560 -0.1900 2.4027 14 6 1.8637 -1.0189 3.5909 15 6 3.3332 -0.6762 3.8035 16 6 4.1682 -0.9079 2.5585 17 1 4.6114 -1.9033 2.5866 18 6 5.2903 0.1691 2.5388 19 8 5.4416 0.5265 1.1462 20 6 4.0881 0.5587 0.6249 21 6 3.4493 -0.7016 1.2382 22 1 3.7558 -1.5279 0.5968 23 1 -0.3634 -1.0212 0.1143 24 1 -0.3632 0.6096 0.8275 25 1 -0.3634 0.4118 -0.9415 26 1 0.7093 1.1619 -3.4844 27 1 0.2766 -0.3052 2.3054 28 1 1.6040 0.8609 2.5518 29 1 1.7605 -2.0815 3.3707 30 1 1.2933 -0.7695 4.4856 31 1 3.7259 -1.2933 4.6116 32 1 3.4114 0.3724 4.0907 33 1 6.2206 -0.2460 2.9265 34 1 4.9905 1.0393 3.1227 35 1 3.5677 1.4562 0.9594 36 1 4.0929 0.5008 -0.4635 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690722816.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:33 Heat of formation + Delta-G solvation = -58.110674 kcal Electronic energy + Delta-G solvation = -16924.597035 eV Core-core repulsion = 14407.819439 eV Total energy + Delta-G solvation = -2516.777596 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.52876 -38.19745 -36.06663 -34.04694 -32.17017 -30.78179 -28.59122 -27.16839 -25.57048 -24.23453 -23.08134 -21.45216 -19.40535 -18.41554 -17.75864 -17.20679 -16.56812 -16.29685 -15.68343 -15.36275 -14.87450 -14.54039 -14.49159 -13.92720 -13.64007 -13.47277 -13.03026 -12.86917 -12.61898 -12.45461 -12.20364 -12.16641 -11.99181 -11.90108 -11.44578 -11.27299 -10.97684 -10.86621 -10.82780 -10.47482 -8.72356 -8.10655 -6.21819 1.40269 1.41622 1.51189 2.41331 2.91222 3.16433 3.49075 3.59158 3.78661 3.97668 4.05030 4.19458 4.30709 4.40680 4.51675 4.75754 4.76428 4.78958 4.83682 4.93128 4.99699 5.04265 5.06376 5.13260 5.16980 5.24079 5.28207 5.45387 5.53309 5.73439 5.78470 5.85664 6.30697 6.50937 6.87679 6.95831 7.46916 8.93826 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030830 B = 0.010336 C = 0.008590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.980046 B = 2708.261968 C = 3258.928732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.220 3.780 3 H -0.025 1.025 4 C -0.510 4.510 5 H 0.051 0.949 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.951 3.049 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.540 5.540 13 C 0.054 3.946 14 C -0.110 4.110 15 C -0.106 4.106 16 C -0.112 4.112 17 H 0.094 0.906 18 C 0.042 3.958 19 O -0.403 6.403 20 C 0.036 3.964 21 C 0.092 3.908 22 H 0.043 0.957 23 H 0.034 0.966 24 H 0.030 0.970 25 H 0.063 0.937 26 H 0.261 0.739 27 H 0.075 0.925 28 H 0.014 0.986 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.956 -2.383 12.496 13.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.114 3.886 3 H -0.008 1.008 4 C -0.548 4.548 5 H 0.069 0.931 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.264 5.264 13 C -0.074 4.074 14 C -0.147 4.147 15 C -0.144 4.144 16 C -0.131 4.131 17 H 0.112 0.888 18 C -0.035 4.035 19 O -0.321 6.321 20 C -0.042 4.042 21 C -0.018 4.018 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.032 0.968 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.982 -2.681 12.217 13.126 hybrid contribution 0.145 0.647 -1.307 1.466 sum 4.127 -2.033 10.910 11.840 Atomic orbital electron populations 1.21733 0.97298 0.98843 1.00587 1.19064 0.92488 0.90511 0.86579 1.00778 1.21316 1.30651 1.11965 0.90911 0.93069 1.25598 0.95473 0.95732 1.01545 1.69990 1.37758 1.23982 1.23976 0.85664 0.78802 0.78414 0.79442 1.20063 1.20984 1.19748 1.59755 1.04259 1.58849 1.03580 1.22165 0.99177 0.95652 0.90376 1.21558 0.95943 1.00203 0.97015 1.21210 0.94900 1.02301 0.95947 1.21966 0.96426 1.00755 0.94003 0.88775 1.24187 0.99975 0.96589 0.82733 1.89206 1.26597 1.91187 1.25136 1.23997 0.82075 0.98311 0.99852 1.21025 0.87995 0.96293 0.96514 0.93907 0.94714 0.95108 0.91869 0.92943 0.90717 0.96815 0.91478 0.89050 0.89001 0.91806 0.86853 0.91531 0.94485 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.12 8.19 71.98 0.59 -5.53 16 2 C 0.22 11.05 1.67 44.17 0.07 11.12 16 3 H -0.03 -1.40 6.38 -2.39 -0.02 -1.42 16 4 C -0.51 -27.98 6.80 25.60 0.17 -27.81 16 5 H 0.05 2.87 6.78 -2.91 -0.02 2.85 16 6 C 0.02 0.84 5.29 84.65 0.45 1.29 16 7 N -0.92 -52.57 11.29 21.44 0.24 -52.33 16 8 Si 0.95 44.30 29.54 68.60 2.03 46.33 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 12 N -0.54 -22.82 4.29 -860.44 -3.69 -26.51 16 13 C 0.05 1.85 5.04 86.58 0.44 2.29 16 14 C -0.11 -2.82 6.14 30.56 0.19 -2.63 16 15 C -0.11 -2.46 5.38 29.96 0.16 -2.30 16 16 C -0.11 -3.28 3.39 -10.76 -0.04 -3.31 16 17 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 18 C 0.04 1.17 7.12 72.86 0.52 1.69 16 19 O -0.40 -15.56 11.70 -148.98 -1.74 -17.30 16 20 C 0.04 1.55 5.54 72.33 0.40 1.95 16 21 C 0.09 3.67 2.30 45.57 0.10 3.78 16 22 H 0.04 1.92 7.04 -2.39 -0.02 1.91 16 23 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.03 1.30 6.67 -2.38 -0.02 1.29 16 25 H 0.06 3.40 5.93 -2.39 -0.01 3.39 16 26 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.07 2.59 6.17 -2.39 -0.01 2.58 16 28 H 0.01 0.49 8.11 -2.39 -0.02 0.47 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.42 7.08 -2.39 -0.02 1.40 16 33 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.07 1.71 7.15 -2.39 -0.02 1.69 16 35 H 0.04 1.64 7.39 -2.39 -0.02 1.62 16 36 H 0.08 3.94 6.87 -2.39 -0.02 3.92 16 Total: -1.00 -61.18 267.73 0.94 -60.24 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 1.05 Total: 9.02 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 3.06 Total: -19.46 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -3.45 Total: -78.83 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -1.74 Total: -17.30 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -61.18 0.94 -60.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690722816.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.133 kcal (2) G-P(sol) polarization free energy of solvation -61.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds