Wall clock time and date at job start Mon Mar 30 2020 03:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47225 * 2 1 4 4 C 1.50698 * 109.47245 * 239.99273 * 2 1 3 5 5 H 1.08001 * 120.00158 * 245.67006 * 4 2 1 6 6 C 1.37879 * 119.99515 * 65.94370 * 4 2 1 7 7 N 1.31518 * 120.00209 * 359.72773 * 6 4 2 8 8 Si 1.86800 * 119.99710 * 179.72180 * 6 4 2 9 9 H 1.48502 * 109.47336 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47038 * 120.00409 * 8 6 4 11 11 H 1.48501 * 109.47425 * 239.99925 * 8 6 4 12 12 N 1.46899 * 109.46766 * 119.99671 * 2 1 3 13 13 C 1.46652 * 110.99881 * 173.91632 * 12 2 1 14 14 C 1.53317 * 108.29876 * 186.62956 * 13 12 2 15 15 C 1.52765 * 108.35777 * 297.13461 * 14 13 12 16 16 C 1.53052 * 110.54644 * 59.87079 * 15 14 13 17 17 H 1.08996 * 113.31747 * 76.26168 * 16 15 14 18 18 C 1.55917 * 106.48503 * 201.27403 * 16 15 14 19 19 O 1.43942 * 104.52262 * 75.51490 * 18 16 15 20 20 C 1.43799 * 109.63069 * 26.06957 * 19 18 16 21 21 C 1.44709 * 111.00043 * 301.20648 * 12 2 1 22 22 H 1.09001 * 109.34761 * 58.63616 * 21 12 2 23 23 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47280 * 300.00210 * 1 2 3 25 25 H 1.08998 * 109.47373 * 60.00460 * 1 2 3 26 26 H 0.97000 * 119.99824 * 179.97438 * 7 6 4 27 27 H 1.09010 * 109.69665 * 306.32647 * 13 12 2 28 28 H 1.08996 * 109.70060 * 66.92452 * 13 12 2 29 29 H 1.08993 * 109.69082 * 177.41384 * 14 13 12 30 30 H 1.09000 * 109.71688 * 56.86274 * 14 13 12 31 31 H 1.09007 * 109.25709 * 299.59819 * 15 14 13 32 32 H 1.08997 * 109.23770 * 180.13343 * 15 14 13 33 33 H 1.09009 * 110.42460 * 316.75235 * 18 16 15 34 34 H 1.09002 * 110.52683 * 194.33038 * 18 16 15 35 35 H 1.08990 * 110.00493 * 239.34198 * 20 19 18 36 36 H 1.09005 * 110.03897 * 118.01484 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5757 -1.6389 -1.1338 6 6 1.8032 -0.1724 -2.4789 7 7 1.1416 0.9581 -2.5965 8 14 2.4327 -1.0492 -4.0036 9 1 3.1400 -2.2921 -3.6034 10 1 1.2880 -1.3934 -4.8847 11 1 3.3700 -0.1593 -4.7349 12 7 2.0196 -0.6924 1.1995 13 6 3.4783 -0.8390 1.1631 14 6 3.9045 -1.7093 2.3512 15 6 3.5305 -0.9801 3.6404 16 6 2.0212 -0.7335 3.6997 17 1 1.4480 -1.6252 3.9534 18 6 1.8037 0.4405 4.7024 19 8 2.2022 1.6161 3.9736 20 6 2.0411 1.3878 2.5630 21 6 1.5325 -0.0528 2.4027 22 1 0.4425 -0.0513 2.3949 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 0.9808 1.3368 -3.4749 27 1 3.7762 -1.3187 0.2307 28 1 3.9481 0.1416 1.2388 29 1 4.9819 -1.8712 2.3201 30 1 3.3878 -2.6682 2.3086 31 1 4.0528 -0.0240 3.6771 32 1 3.8297 -1.5862 4.4955 33 1 2.4309 0.3087 5.5842 34 1 0.7544 0.5084 4.9896 35 1 2.9983 1.5039 2.0548 36 1 1.3137 2.0879 2.1520 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690722818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:35 Heat of formation + Delta-G solvation = -44.086065 kcal Electronic energy + Delta-G solvation = -16840.732941 eV Core-core repulsion = 14324.563498 eV Total energy + Delta-G solvation = -2516.169443 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.23949 -36.55393 -34.12766 -32.17424 -30.68921 -28.99373 -27.40591 -25.20415 -24.20745 -22.36519 -21.50404 -19.92867 -18.31944 -16.41557 -16.20097 -15.57767 -15.15733 -14.83649 -14.24648 -13.52954 -13.32094 -12.97468 -12.59326 -12.55800 -12.08545 -11.94131 -11.54514 -11.16154 -10.99203 -10.96124 -10.64319 -10.45503 -10.43103 -10.11299 -10.09345 -9.91203 -9.48812 -9.10847 -8.86279 -8.45975 -7.13713 -6.05396 -4.08932 3.27765 3.36037 3.39859 4.13319 4.39022 4.80291 4.91194 5.09228 5.25419 5.28226 5.41550 5.51470 5.63032 5.68832 5.84761 5.92777 5.97146 6.09805 6.24020 6.26107 6.30147 6.43730 6.53404 6.74146 6.76280 6.87274 6.99001 7.10682 7.24013 7.47136 7.70829 7.80528 8.14940 8.25829 8.60574 8.98704 9.56310 11.02926 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040957 B = 0.008662 C = 0.007754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.485874 B = 3231.860293 C = 3610.319528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.213 3.787 3 H 0.006 0.994 4 C -0.505 4.505 5 H 0.065 0.935 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.528 5.528 13 C 0.065 3.935 14 C -0.118 4.118 15 C -0.111 4.111 16 C -0.116 4.116 17 H 0.097 0.903 18 C 0.050 3.950 19 O -0.389 6.389 20 C 0.019 3.981 21 C 0.069 3.931 22 H 0.087 0.913 23 H 0.036 0.964 24 H 0.009 0.991 25 H 0.076 0.924 26 H 0.260 0.740 27 H 0.091 0.909 28 H 0.022 0.978 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.223 -2.758 10.608 11.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.107 3.893 3 H 0.024 0.976 4 C -0.544 4.544 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.252 5.252 13 C -0.062 4.062 14 C -0.156 4.156 15 C -0.149 4.149 16 C -0.135 4.135 17 H 0.115 0.885 18 C -0.027 4.027 19 O -0.308 6.308 20 C -0.059 4.059 21 C -0.042 4.042 22 H 0.105 0.895 23 H 0.055 0.945 24 H 0.028 0.972 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.109 0.891 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.049 -2.884 10.542 11.120 hybrid contribution 0.441 0.312 -1.004 1.140 sum 2.489 -2.572 9.538 10.187 Atomic orbital electron populations 1.21815 0.97980 0.99555 0.99457 1.19248 0.92043 0.92395 0.85569 0.97637 1.21163 1.35308 1.07982 0.89926 0.91707 1.24946 0.95271 0.94963 0.99041 1.69937 1.40715 1.18828 1.23620 0.86487 0.78576 0.79668 0.82964 1.19706 1.21047 1.21148 1.60742 1.10282 1.52557 1.01584 1.21994 0.88194 0.97478 0.98552 1.21626 0.99700 0.99619 0.94674 1.21496 0.94710 1.00642 0.98034 1.22930 0.97319 0.98226 0.95048 0.88469 1.23649 0.99208 0.84868 0.94980 1.88501 1.87652 1.36609 1.18046 1.23807 1.01423 0.99230 0.81451 1.22341 1.00558 0.90029 0.91300 0.89548 0.94482 0.97202 0.90568 0.93000 0.89088 0.95950 0.92348 0.91393 0.91899 0.92633 0.90191 0.92696 0.91250 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.74 37.16 0.32 -2.77 16 2 C 0.21 5.22 1.78 -68.87 -0.12 5.10 16 3 H 0.01 0.16 7.38 -51.93 -0.38 -0.22 16 4 C -0.51 -13.48 7.63 -34.44 -0.26 -13.74 16 5 H 0.06 1.73 6.52 -52.49 -0.34 1.39 16 6 C 0.06 1.61 5.33 -17.82 -0.09 1.52 16 7 N -0.89 -25.18 11.76 55.43 0.65 -24.53 16 8 Si 0.89 21.04 29.54 -169.99 -5.02 16.01 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.53 -11.02 4.35 -220.51 -0.96 -11.98 16 13 C 0.07 1.27 5.05 -3.80 -0.02 1.25 16 14 C -0.12 -1.84 6.12 -26.69 -0.16 -2.01 16 15 C -0.11 -1.60 4.91 -26.83 -0.13 -1.73 16 16 C -0.12 -1.73 3.91 -88.29 -0.35 -2.08 16 17 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 18 C 0.05 0.70 7.00 38.72 0.27 0.97 16 19 O -0.39 -6.81 10.95 -35.23 -0.39 -7.19 16 20 C 0.02 0.36 5.75 37.47 0.22 0.57 16 21 C 0.07 1.25 2.22 -67.83 -0.15 1.10 16 22 H 0.09 1.62 6.15 -51.93 -0.32 1.30 16 23 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.01 0.20 6.36 -51.93 -0.33 -0.13 16 25 H 0.08 1.99 6.55 -51.93 -0.34 1.65 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.09 1.91 6.02 -51.92 -0.31 1.60 16 28 H 0.02 0.45 6.43 -51.93 -0.33 0.12 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.97 7.14 -51.92 -0.37 0.60 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.96 8.01 -51.92 -0.42 0.55 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.38 6.22 -51.93 -0.32 1.05 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 268.43 15.07 4.05 4.05 Total: -1.00 -27.88 268.43 -7.71 -35.59 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.56 Total: -0.14 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.48 Total: -11.81 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.31 Total: -36.51 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.39 Total: -7.19 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.88 -7.71 -35.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690722818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.497 kcal (2) G-P(sol) polarization free energy of solvation -27.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds