Wall clock time and date at job start Mon Mar 30 2020 03:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47225 * 2 1 4 4 C 1.50698 * 109.47245 * 239.99273 * 2 1 3 5 5 H 1.08001 * 120.00158 * 245.67006 * 4 2 1 6 6 C 1.37879 * 119.99515 * 65.94370 * 4 2 1 7 7 N 1.31518 * 120.00209 * 359.72773 * 6 4 2 8 8 Si 1.86800 * 119.99710 * 179.72180 * 6 4 2 9 9 H 1.48502 * 109.47336 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47038 * 120.00409 * 8 6 4 11 11 H 1.48501 * 109.47425 * 239.99925 * 8 6 4 12 12 N 1.46899 * 109.46766 * 119.99671 * 2 1 3 13 13 C 1.46652 * 110.99881 * 173.91632 * 12 2 1 14 14 C 1.53317 * 108.29876 * 186.62956 * 13 12 2 15 15 C 1.52765 * 108.35777 * 297.13461 * 14 13 12 16 16 C 1.53052 * 110.54644 * 59.87079 * 15 14 13 17 17 H 1.08996 * 113.31747 * 76.26168 * 16 15 14 18 18 C 1.55917 * 106.48503 * 201.27403 * 16 15 14 19 19 O 1.43942 * 104.52262 * 75.51490 * 18 16 15 20 20 C 1.43799 * 109.63069 * 26.06957 * 19 18 16 21 21 C 1.44709 * 111.00043 * 301.20648 * 12 2 1 22 22 H 1.09001 * 109.34761 * 58.63616 * 21 12 2 23 23 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47280 * 300.00210 * 1 2 3 25 25 H 1.08998 * 109.47373 * 60.00460 * 1 2 3 26 26 H 0.97000 * 119.99824 * 179.97438 * 7 6 4 27 27 H 1.09010 * 109.69665 * 306.32647 * 13 12 2 28 28 H 1.08996 * 109.70060 * 66.92452 * 13 12 2 29 29 H 1.08993 * 109.69082 * 177.41384 * 14 13 12 30 30 H 1.09000 * 109.71688 * 56.86274 * 14 13 12 31 31 H 1.09007 * 109.25709 * 299.59819 * 15 14 13 32 32 H 1.08997 * 109.23770 * 180.13343 * 15 14 13 33 33 H 1.09009 * 110.42460 * 316.75235 * 18 16 15 34 34 H 1.09002 * 110.52683 * 194.33038 * 18 16 15 35 35 H 1.08990 * 110.00493 * 239.34198 * 20 19 18 36 36 H 1.09005 * 110.03897 * 118.01484 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5757 -1.6389 -1.1338 6 6 1.8032 -0.1724 -2.4789 7 7 1.1416 0.9581 -2.5965 8 14 2.4327 -1.0492 -4.0036 9 1 3.1400 -2.2921 -3.6034 10 1 1.2880 -1.3934 -4.8847 11 1 3.3700 -0.1593 -4.7349 12 7 2.0196 -0.6924 1.1995 13 6 3.4783 -0.8390 1.1631 14 6 3.9045 -1.7093 2.3512 15 6 3.5305 -0.9801 3.6404 16 6 2.0212 -0.7335 3.6997 17 1 1.4480 -1.6252 3.9534 18 6 1.8037 0.4405 4.7024 19 8 2.2022 1.6161 3.9736 20 6 2.0411 1.3878 2.5630 21 6 1.5325 -0.0528 2.4027 22 1 0.4425 -0.0513 2.3949 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 0.9808 1.3368 -3.4749 27 1 3.7762 -1.3187 0.2307 28 1 3.9481 0.1416 1.2388 29 1 4.9819 -1.8712 2.3201 30 1 3.3878 -2.6682 2.3086 31 1 4.0528 -0.0240 3.6771 32 1 3.8297 -1.5862 4.4955 33 1 2.4309 0.3087 5.5842 34 1 0.7544 0.5084 4.9896 35 1 2.9983 1.5039 2.0548 36 1 1.3137 2.0879 2.1520 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690722818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:35 Heat of formation + Delta-G solvation = -62.388625 kcal Electronic energy + Delta-G solvation = -16841.526600 eV Core-core repulsion = 14324.563498 eV Total energy + Delta-G solvation = -2516.963102 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.64288 -38.11795 -35.74788 -33.98585 -32.06788 -30.76216 -28.86171 -27.21382 -25.62029 -23.93555 -22.85798 -21.56647 -19.78394 -18.38010 -17.69495 -17.08520 -16.75184 -16.28258 -15.87722 -15.00873 -14.85829 -14.68506 -14.13335 -13.99324 -13.58429 -13.39495 -13.30953 -12.88665 -12.65171 -12.44311 -12.36686 -12.15760 -12.10453 -11.93855 -11.54870 -11.47676 -10.90608 -10.78105 -10.53645 -10.44482 -8.86757 -8.13607 -6.23724 1.40427 1.42633 1.53983 2.41250 2.80675 3.17412 3.36942 3.57235 3.79357 3.96685 4.09202 4.17416 4.29250 4.38074 4.60997 4.68021 4.75014 4.76196 4.82940 4.84684 4.89064 4.98486 5.07173 5.13525 5.18363 5.24561 5.32462 5.48741 5.55115 5.72581 5.77525 5.92420 6.22339 6.39363 6.81045 6.93033 7.45523 8.94341 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040957 B = 0.008662 C = 0.007754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.485874 B = 3231.860293 C = 3610.319528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.218 3.782 3 H -0.032 1.032 4 C -0.516 4.516 5 H 0.062 0.938 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.958 3.042 9 H -0.265 1.265 10 H -0.281 1.281 11 H -0.283 1.283 12 N -0.528 5.528 13 C 0.063 3.937 14 C -0.109 4.109 15 C -0.108 4.108 16 C -0.108 4.108 17 H 0.119 0.881 18 C 0.048 3.952 19 O -0.401 6.401 20 C 0.029 3.971 21 C 0.061 3.939 22 H 0.082 0.918 23 H 0.037 0.963 24 H 0.029 0.971 25 H 0.048 0.952 26 H 0.261 0.739 27 H 0.068 0.932 28 H 0.008 0.992 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 -4.339 12.300 13.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.111 3.889 3 H -0.014 1.014 4 C -0.555 4.555 5 H 0.080 0.920 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.784 3.216 9 H -0.189 1.189 10 H -0.207 1.207 11 H -0.209 1.209 12 N -0.251 5.251 13 C -0.064 4.064 14 C -0.147 4.147 15 C -0.145 4.145 16 C -0.127 4.127 17 H 0.137 0.863 18 C -0.029 4.029 19 O -0.321 6.321 20 C -0.049 4.049 21 C -0.049 4.049 22 H 0.100 0.900 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.026 0.974 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.540 -4.477 12.260 13.297 hybrid contribution 0.293 0.834 -1.474 1.718 sum 2.833 -3.643 10.786 11.732 Atomic orbital electron populations 1.21625 0.97516 0.99339 0.99092 1.19018 0.92356 0.90521 0.86980 1.01399 1.21438 1.35097 1.07900 0.91028 0.92015 1.25725 0.95530 0.95645 1.01958 1.70063 1.41801 1.20138 1.24208 0.85495 0.78018 0.78736 0.79328 1.18909 1.20700 1.20936 1.60704 1.11156 1.52000 1.01278 1.22013 0.87290 0.97422 0.99688 1.21570 1.01025 0.98780 0.93300 1.21495 0.94074 1.00474 0.98501 1.22988 0.97935 0.99096 0.92657 0.86310 1.23920 1.00922 0.82958 0.95054 1.88488 1.87895 1.38540 1.17145 1.23534 0.99815 0.99221 0.82363 1.22450 1.00285 0.90306 0.91900 0.90038 0.94391 0.95207 0.93264 0.93016 0.91358 0.97419 0.90264 0.90996 0.93140 0.89053 0.87265 0.91120 0.93261 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.74 71.98 0.63 -5.07 16 2 C 0.22 11.00 1.78 44.17 0.08 11.08 16 3 H -0.03 -1.80 7.38 -2.39 -0.02 -1.82 16 4 C -0.52 -28.12 7.63 25.60 0.20 -27.92 16 5 H 0.06 3.33 6.52 -2.91 -0.02 3.32 16 6 C 0.01 0.55 5.33 84.65 0.45 1.01 16 7 N -0.92 -53.48 11.76 21.45 0.25 -53.23 16 8 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 9 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 N -0.53 -22.08 4.35 -851.56 -3.70 -25.78 16 13 C 0.06 2.47 5.05 86.46 0.44 2.91 16 14 C -0.11 -3.13 6.12 30.62 0.19 -2.95 16 15 C -0.11 -2.73 4.91 30.53 0.15 -2.58 16 16 C -0.11 -2.87 3.91 -9.29 -0.04 -2.91 16 17 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 18 C 0.05 1.17 7.00 72.99 0.51 1.68 16 19 O -0.40 -13.47 10.95 -148.98 -1.63 -15.10 16 20 C 0.03 1.11 5.75 72.19 0.41 1.52 16 21 C 0.06 2.18 2.22 46.01 0.10 2.28 16 22 H 0.08 2.97 6.15 -2.39 -0.01 2.95 16 23 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.03 1.27 6.36 -2.39 -0.02 1.26 16 25 H 0.05 2.64 6.55 -2.39 -0.02 2.62 16 26 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 27 H 0.07 2.93 6.02 -2.38 -0.01 2.91 16 28 H 0.01 0.32 6.43 -2.39 -0.02 0.30 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 1.42 7.14 -2.38 -0.02 1.41 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.11 2.11 8.01 -2.38 -0.02 2.09 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 2.04 6.22 -2.39 -0.01 2.02 16 36 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -61.01 268.43 1.12 -59.90 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 1.05 Total: 9.53 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 3.12 Total: -20.96 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -3.45 Total: -79.01 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -1.63 Total: -15.10 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -61.01 1.12 -59.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690722818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.491 kcal (2) G-P(sol) polarization free energy of solvation -61.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds