Wall clock time and date at job start Mon Mar 30 2020 03:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47350 * 2 1 4 4 C 1.50701 * 109.47058 * 240.00363 * 2 1 3 5 5 H 1.08006 * 119.99943 * 245.24771 * 4 2 1 6 6 C 1.37876 * 120.00215 * 65.24168 * 4 2 1 7 7 N 1.31517 * 120.00394 * 195.92691 * 6 4 2 8 8 Si 1.86809 * 119.99815 * 15.93061 * 6 4 2 9 9 H 1.48499 * 109.46930 * 94.31281 * 8 6 4 10 10 H 1.48502 * 109.46784 * 214.31455 * 8 6 4 11 11 H 1.48496 * 109.46821 * 334.31464 * 8 6 4 12 12 N 1.46897 * 109.47421 * 120.00253 * 2 1 3 13 13 C 1.47813 * 110.99826 * 63.53860 * 12 2 1 14 14 C 1.52525 * 112.00708 * 180.43175 * 13 12 2 15 15 C 1.53954 * 111.62433 * 307.51293 * 14 13 12 16 16 C 1.51755 * 106.55111 * 55.16828 * 15 14 13 17 17 H 1.08994 * 110.94169 * 57.55560 * 16 15 14 18 18 C 1.53060 * 116.73638 * 186.86253 * 16 15 14 19 19 O 1.45081 * 103.75713 * 154.33686 * 18 16 15 20 20 C 1.44555 * 109.57808 * 335.30593 * 19 18 16 21 21 C 1.44962 * 111.00342 * 184.10342 * 12 2 1 22 22 H 1.08995 * 109.73864 * 289.59849 * 21 12 2 23 23 H 1.09004 * 109.46787 * 296.06703 * 1 2 3 24 24 H 1.08996 * 109.47383 * 56.06860 * 1 2 3 25 25 H 1.09001 * 109.46868 * 176.06975 * 1 2 3 26 26 H 0.96996 * 119.99862 * 180.02562 * 7 6 4 27 27 H 1.08995 * 108.97729 * 59.78043 * 13 12 2 28 28 H 1.09002 * 108.97425 * 301.08214 * 13 12 2 29 29 H 1.08999 * 109.05211 * 186.96327 * 14 13 12 30 30 H 1.08998 * 109.05238 * 68.06807 * 14 13 12 31 31 H 1.08999 * 110.03207 * 295.91087 * 15 14 13 32 32 H 1.08999 * 110.03443 * 174.42517 * 15 14 13 33 33 H 1.08999 * 110.57121 * 272.86464 * 18 16 15 34 34 H 1.09000 * 110.56943 * 35.58126 * 18 16 15 35 35 H 1.09005 * 110.10852 * 237.99330 * 20 19 18 36 36 H 1.08998 * 110.11701 * 116.40941 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5815 -1.6353 -1.1337 6 6 1.7907 -0.1796 -2.4799 7 7 1.9402 -0.9266 -3.5519 8 14 1.2509 1.6007 -2.6499 9 1 2.4398 2.4576 -2.8896 10 1 0.3117 1.7261 -3.7933 11 1 0.5723 2.0335 -1.4020 12 7 2.0197 -0.6925 1.1994 13 6 1.6166 -2.1146 1.1916 14 6 2.1047 -2.8538 2.4332 15 6 3.6174 -2.6650 2.6479 16 6 3.8648 -1.1683 2.6887 17 1 3.2746 -0.6971 3.4746 18 6 5.3253 -0.7126 2.7320 19 8 5.2894 0.6167 2.1519 20 6 4.1392 0.7357 1.2845 21 6 3.4655 -0.6286 1.2823 22 1 3.9068 -1.2560 0.5079 23 1 -0.3633 0.4516 0.9232 24 1 -0.3634 0.5736 -0.8526 25 1 -0.3633 -1.0253 -0.0704 26 1 1.7705 -0.5530 -4.4308 27 1 2.0320 -2.5960 0.3064 28 1 0.5291 -2.1744 1.1481 29 1 1.8913 -3.9168 2.3213 30 1 1.5716 -2.4752 3.3053 31 1 4.1705 -3.1125 1.8221 32 1 3.9203 -3.1193 3.5913 33 1 5.6832 -0.6712 3.7608 34 1 5.9515 -1.3767 2.1363 35 1 4.4564 0.9988 0.2753 36 1 3.4549 1.4911 1.6708 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690722821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:37 Heat of formation + Delta-G solvation = -38.320790 kcal Electronic energy + Delta-G solvation = -16901.949759 eV Core-core repulsion = 14386.030317 eV Total energy + Delta-G solvation = -2515.919442 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.01438 -36.85310 -34.36795 -32.11326 -30.51361 -29.66187 -27.43732 -25.15128 -24.48962 -22.06505 -21.19050 -19.86090 -19.01559 -16.61548 -15.98356 -15.70971 -14.82819 -14.67921 -14.29430 -13.53222 -13.52187 -13.13905 -12.78743 -12.64223 -12.25366 -12.15594 -11.84416 -11.34357 -11.01829 -10.81277 -10.68826 -10.48700 -10.40654 -10.22909 -9.88066 -9.65236 -9.58443 -9.28062 -9.16118 -8.54637 -7.28831 -6.19095 -4.15388 3.23446 3.33620 3.36565 4.22539 4.35596 4.62145 4.78948 5.11287 5.17036 5.36431 5.47612 5.61674 5.72840 5.77106 5.82726 5.98828 6.01469 6.16558 6.20638 6.26458 6.39610 6.42299 6.46517 6.56331 6.62924 6.69236 6.71399 6.84683 7.08061 7.18026 7.26536 7.52226 8.02945 8.05747 8.38514 8.85599 9.47828 10.93547 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029761 B = 0.010685 C = 0.009290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.616321 B = 2619.770061 C = 3013.384480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.172 3.828 3 H 0.036 0.964 4 C -0.553 4.553 5 H 0.075 0.925 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.861 3.139 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.251 1.251 12 N -0.503 5.503 13 C 0.051 3.949 14 C -0.115 4.115 15 C -0.103 4.103 16 C -0.130 4.130 17 H 0.091 0.909 18 C 0.059 3.941 19 O -0.393 6.393 20 C 0.064 3.936 21 C 0.059 3.941 22 H 0.058 0.942 23 H 0.031 0.969 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.263 0.737 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.784 -1.135 11.117 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.065 3.935 3 H 0.054 0.946 4 C -0.591 4.591 5 H 0.093 0.907 6 C -0.122 4.122 7 N -0.526 5.526 8 Si 0.688 3.312 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.175 1.175 12 N -0.228 5.228 13 C -0.076 4.076 14 C -0.153 4.153 15 C -0.141 4.141 16 C -0.149 4.149 17 H 0.109 0.891 18 C -0.018 4.018 19 O -0.312 6.312 20 C -0.012 4.012 21 C -0.051 4.051 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.689 -0.731 11.366 11.514 hybrid contribution -0.135 0.326 -1.252 1.301 sum 1.554 -0.405 10.114 10.241 Atomic orbital electron populations 1.22114 0.98003 1.00557 0.98880 1.19697 0.92129 0.94512 0.87206 0.94632 1.21500 1.37355 1.10280 0.89931 0.90711 1.24912 0.94170 0.97368 0.95775 1.69998 1.48573 1.35515 0.98468 0.87202 0.78964 0.86528 0.78494 1.20586 1.21309 1.17548 1.62901 1.07348 1.12393 1.40156 1.22062 1.00440 0.88762 0.96377 1.21636 0.95138 0.99450 0.99096 1.21357 0.96988 0.94608 1.01127 1.22685 0.95823 0.97053 0.99340 0.89110 1.23000 0.96096 0.84719 0.97957 1.88875 1.47196 1.31523 1.63637 1.22649 0.87023 0.97382 0.94195 1.22410 0.91327 0.96034 0.95329 0.92393 0.94988 0.93494 0.93355 0.92669 0.93176 0.91097 0.92155 0.92158 0.91850 0.92184 0.90282 0.92324 0.90571 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.36 37.16 0.31 -2.65 16 2 C 0.17 3.93 1.78 -68.87 -0.12 3.80 16 3 H 0.04 0.84 5.85 -51.93 -0.30 0.54 16 4 C -0.55 -14.66 7.59 -34.44 -0.26 -14.92 16 5 H 0.07 2.17 5.83 -52.48 -0.31 1.87 16 6 C 0.08 2.26 5.36 -17.82 -0.10 2.16 16 7 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 8 Si 0.86 20.72 25.91 -169.99 -4.40 16.32 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.25 -5.70 5.41 56.52 0.31 -5.40 16 12 N -0.50 -10.10 4.76 -219.82 -1.05 -11.15 16 13 C 0.05 0.96 4.74 -3.56 -0.02 0.94 16 14 C -0.12 -1.70 5.97 -26.48 -0.16 -1.86 16 15 C -0.10 -1.44 5.77 -26.86 -0.16 -1.59 16 16 C -0.13 -2.01 2.76 -89.71 -0.25 -2.26 16 17 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 18 C 0.06 0.87 7.42 37.19 0.28 1.15 16 19 O -0.39 -7.07 11.49 -35.23 -0.40 -7.47 16 20 C 0.06 1.21 6.66 36.73 0.24 1.45 16 21 C 0.06 1.13 1.46 -67.67 -0.10 1.03 16 22 H 0.06 1.25 6.77 -51.93 -0.35 0.90 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.05 1.03 4.98 -51.93 -0.26 0.77 16 25 H 0.05 1.02 6.66 -51.93 -0.35 0.68 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.05 1.07 6.07 -51.93 -0.32 0.76 16 28 H 0.07 1.32 6.41 -51.93 -0.33 0.99 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 LS Contribution 265.65 15.07 4.00 4.00 Total: -1.00 -28.58 265.65 -7.06 -35.64 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.66 Total: 0.97 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -0.32 Total: -12.74 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.27 Total: -36.73 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.40 Total: -7.47 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.40 Total: 16.32 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.58 -7.06 -35.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690722821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.676 kcal (2) G-P(sol) polarization free energy of solvation -28.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds