Wall clock time and date at job start Mon Mar 30 2020 03:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47350 * 2 1 4 4 C 1.50701 * 109.47058 * 240.00363 * 2 1 3 5 5 H 1.08006 * 119.99943 * 245.24771 * 4 2 1 6 6 C 1.37876 * 120.00215 * 65.24168 * 4 2 1 7 7 N 1.31517 * 120.00394 * 195.92691 * 6 4 2 8 8 Si 1.86809 * 119.99815 * 15.93061 * 6 4 2 9 9 H 1.48499 * 109.46930 * 94.31281 * 8 6 4 10 10 H 1.48502 * 109.46784 * 214.31455 * 8 6 4 11 11 H 1.48496 * 109.46821 * 334.31464 * 8 6 4 12 12 N 1.46897 * 109.47421 * 120.00253 * 2 1 3 13 13 C 1.47813 * 110.99826 * 63.53860 * 12 2 1 14 14 C 1.52525 * 112.00708 * 180.43175 * 13 12 2 15 15 C 1.53954 * 111.62433 * 307.51293 * 14 13 12 16 16 C 1.51755 * 106.55111 * 55.16828 * 15 14 13 17 17 H 1.08994 * 110.94169 * 57.55560 * 16 15 14 18 18 C 1.53060 * 116.73638 * 186.86253 * 16 15 14 19 19 O 1.45081 * 103.75713 * 154.33686 * 18 16 15 20 20 C 1.44555 * 109.57808 * 335.30593 * 19 18 16 21 21 C 1.44962 * 111.00342 * 184.10342 * 12 2 1 22 22 H 1.08995 * 109.73864 * 289.59849 * 21 12 2 23 23 H 1.09004 * 109.46787 * 296.06703 * 1 2 3 24 24 H 1.08996 * 109.47383 * 56.06860 * 1 2 3 25 25 H 1.09001 * 109.46868 * 176.06975 * 1 2 3 26 26 H 0.96996 * 119.99862 * 180.02562 * 7 6 4 27 27 H 1.08995 * 108.97729 * 59.78043 * 13 12 2 28 28 H 1.09002 * 108.97425 * 301.08214 * 13 12 2 29 29 H 1.08999 * 109.05211 * 186.96327 * 14 13 12 30 30 H 1.08998 * 109.05238 * 68.06807 * 14 13 12 31 31 H 1.08999 * 110.03207 * 295.91087 * 15 14 13 32 32 H 1.08999 * 110.03443 * 174.42517 * 15 14 13 33 33 H 1.08999 * 110.57121 * 272.86464 * 18 16 15 34 34 H 1.09000 * 110.56943 * 35.58126 * 18 16 15 35 35 H 1.09005 * 110.10852 * 237.99330 * 20 19 18 36 36 H 1.08998 * 110.11701 * 116.40941 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5815 -1.6353 -1.1337 6 6 1.7907 -0.1796 -2.4799 7 7 1.9402 -0.9266 -3.5519 8 14 1.2509 1.6007 -2.6499 9 1 2.4398 2.4576 -2.8896 10 1 0.3117 1.7261 -3.7933 11 1 0.5723 2.0335 -1.4020 12 7 2.0197 -0.6925 1.1994 13 6 1.6166 -2.1146 1.1916 14 6 2.1047 -2.8538 2.4332 15 6 3.6174 -2.6650 2.6479 16 6 3.8648 -1.1683 2.6887 17 1 3.2746 -0.6971 3.4746 18 6 5.3253 -0.7126 2.7320 19 8 5.2894 0.6167 2.1519 20 6 4.1392 0.7357 1.2845 21 6 3.4655 -0.6286 1.2823 22 1 3.9068 -1.2560 0.5079 23 1 -0.3633 0.4516 0.9232 24 1 -0.3634 0.5736 -0.8526 25 1 -0.3633 -1.0253 -0.0704 26 1 1.7705 -0.5530 -4.4308 27 1 2.0320 -2.5960 0.3064 28 1 0.5291 -2.1744 1.1481 29 1 1.8913 -3.9168 2.3213 30 1 1.5716 -2.4752 3.3053 31 1 4.1705 -3.1125 1.8221 32 1 3.9203 -3.1193 3.5913 33 1 5.6832 -0.6712 3.7608 34 1 5.9515 -1.3767 2.1363 35 1 4.4564 0.9988 0.2753 36 1 3.4549 1.4911 1.6708 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690722821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:36 Heat of formation + Delta-G solvation = -58.944892 kcal Electronic energy + Delta-G solvation = -16902.844087 eV Core-core repulsion = 14386.030317 eV Total energy + Delta-G solvation = -2516.813770 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.45058 -38.38530 -35.93359 -34.07041 -31.94310 -31.28360 -28.86237 -27.15152 -25.93284 -23.56522 -22.63041 -21.20623 -20.81021 -18.56969 -17.47470 -17.17109 -16.43436 -16.17923 -15.95277 -15.05795 -15.01909 -14.63855 -14.57683 -14.17456 -13.88430 -13.62641 -13.31293 -13.07483 -12.75528 -12.47470 -12.26256 -11.97984 -11.85073 -11.65297 -11.58291 -11.42910 -11.22627 -10.83586 -10.66419 -10.55070 -9.04310 -8.34704 -6.33841 1.30650 1.36256 1.44718 2.31983 2.85062 3.01180 3.17909 3.40025 3.89784 4.07506 4.20674 4.24771 4.31127 4.46197 4.49504 4.56635 4.75550 4.77216 4.81677 4.84044 4.89786 4.96865 5.01791 5.07651 5.11709 5.19144 5.24286 5.31770 5.45862 5.51592 5.58179 5.86272 6.16168 6.32037 6.42016 6.72026 7.32462 8.81639 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029761 B = 0.010685 C = 0.009290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.616321 B = 2619.770061 C = 3013.384480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.172 3.828 3 H 0.034 0.966 4 C -0.542 4.542 5 H 0.034 0.966 6 C 0.024 3.976 7 N -0.940 5.940 8 Si 0.921 3.079 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.225 1.225 12 N -0.495 5.495 13 C 0.052 3.948 14 C -0.109 4.109 15 C -0.100 4.100 16 C -0.114 4.114 17 H 0.100 0.900 18 C 0.055 3.945 19 O -0.404 6.404 20 C 0.068 3.932 21 C 0.051 3.949 22 H 0.021 0.979 23 H 0.058 0.942 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.264 0.736 27 H 0.010 0.990 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.365 -0.466 13.943 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.063 3.937 3 H 0.051 0.949 4 C -0.581 4.581 5 H 0.053 0.947 6 C -0.174 4.174 7 N -0.579 5.579 8 Si 0.745 3.255 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.147 1.147 12 N -0.219 5.219 13 C -0.075 4.075 14 C -0.147 4.147 15 C -0.138 4.138 16 C -0.133 4.133 17 H 0.118 0.882 18 C -0.020 4.020 19 O -0.324 6.324 20 C -0.009 4.009 21 C -0.059 4.059 22 H 0.039 0.961 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.028 0.972 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.133 0.867 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.272 -0.067 14.225 14.282 hybrid contribution 0.064 0.013 -2.109 2.110 sum 1.336 -0.054 12.116 12.190 Atomic orbital electron populations 1.22019 0.96481 1.00591 1.00010 1.19646 0.93255 0.94137 0.86638 0.94850 1.21710 1.35886 1.08805 0.91690 0.94748 1.25732 0.94785 1.01502 0.95429 1.70132 1.51095 1.37583 0.99087 0.86249 0.78677 0.81142 0.79475 1.20597 1.21238 1.14735 1.62960 1.07940 1.13025 1.37933 1.22118 1.00291 0.87997 0.97135 1.21603 0.95846 0.99946 0.97290 1.21379 0.96199 0.93602 1.02574 1.22672 0.96168 0.97931 0.96500 0.88196 1.23262 0.95780 0.83263 0.99736 1.88856 1.46703 1.33367 1.63449 1.22501 0.87468 0.97348 0.93565 1.22434 0.90464 0.96004 0.97014 0.96128 0.92270 0.94036 0.93751 0.92700 0.97211 0.91174 0.90333 0.90291 0.93192 0.88360 0.86725 0.92094 0.92738 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.51 8.36 71.98 0.60 -4.91 16 2 C 0.17 7.79 1.78 44.17 0.08 7.86 16 3 H 0.03 1.55 5.85 -2.39 -0.01 1.53 16 4 C -0.54 -29.82 7.59 25.60 0.19 -29.62 16 5 H 0.03 2.14 5.83 -2.91 -0.02 2.12 16 6 C 0.02 1.39 5.36 84.65 0.45 1.84 16 7 N -0.94 -57.94 13.96 21.45 0.30 -57.65 16 8 Si 0.92 42.99 25.91 68.60 1.78 44.77 16 9 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.22 -9.45 5.41 99.48 0.54 -8.91 16 12 N -0.49 -19.52 4.76 -849.37 -4.04 -23.57 16 13 C 0.05 1.94 4.74 85.97 0.41 2.35 16 14 C -0.11 -2.94 5.97 30.76 0.18 -2.75 16 15 C -0.10 -2.50 5.77 30.51 0.18 -2.33 16 16 C -0.11 -3.23 2.76 -10.20 -0.03 -3.26 16 17 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 18 C 0.06 1.49 7.42 72.00 0.53 2.03 16 19 O -0.40 -13.92 11.49 -148.98 -1.71 -15.63 16 20 C 0.07 2.54 6.66 71.70 0.48 3.02 16 21 C 0.05 1.94 1.46 45.98 0.07 2.01 16 22 H 0.02 0.94 6.77 -2.39 -0.02 0.92 16 23 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 24 H 0.04 1.74 4.98 -2.39 -0.01 1.73 16 25 H 0.04 1.84 6.66 -2.39 -0.02 1.82 16 26 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 27 H 0.01 0.43 6.07 -2.39 -0.01 0.42 16 28 H 0.07 2.57 6.41 -2.39 -0.02 2.55 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.39 7.98 -2.39 -0.02 1.37 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.08 2.74 8.06 -2.39 -0.02 2.72 16 Total: -1.00 -63.82 265.65 0.35 -63.47 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.88 Total: 12.37 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 3.15 Total: -23.76 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -3.75 Total: -81.21 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -1.71 Total: -15.63 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.78 Total: 44.77 kcal Total: -63.82 0.35 -63.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690722821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.523 kcal (2) G-P(sol) polarization free energy of solvation -63.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds