Wall clock time and date at job start Mon Mar 30 2020 03:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46965 * 2 1 4 4 C 1.50700 * 109.46781 * 240.00638 * 2 1 3 5 5 H 1.08007 * 120.00027 * 239.99918 * 4 2 1 6 6 C 1.37881 * 120.00436 * 60.00015 * 4 2 1 7 7 N 1.31512 * 119.99782 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00239 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46907 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47333 * 119.99568 * 8 6 4 11 11 H 1.48500 * 109.46990 * 239.99885 * 8 6 4 12 12 N 1.46893 * 109.47338 * 120.00497 * 2 1 3 13 13 C 1.46273 * 111.00162 * 58.95356 * 12 2 1 14 14 C 1.53941 * 112.18062 * 180.61683 * 13 12 2 15 15 C 1.51540 * 106.61508 * 303.83243 * 14 13 12 16 16 H 1.09002 * 110.75203 * 303.04880 * 15 14 13 17 17 C 1.52852 * 117.60956 * 174.21603 * 15 14 13 18 18 O 1.46608 * 102.86779 * 204.84460 * 17 15 14 19 19 C 1.44649 * 109.82703 * 24.45873 * 18 17 15 20 20 C 1.52090 * 106.01706 * 3.40321 * 19 18 17 21 21 H 1.09008 * 110.22795 * 87.13911 * 20 19 18 22 22 C 1.47834 * 110.99970 * 186.79531 * 12 2 1 23 23 H 1.09003 * 109.46970 * 299.99140 * 1 2 3 24 24 H 1.08997 * 109.47335 * 59.99384 * 1 2 3 25 25 H 1.09002 * 109.46708 * 179.97438 * 1 2 3 26 26 H 0.96999 * 119.99866 * 180.02562 * 7 6 4 27 27 H 1.09000 * 108.93941 * 59.91992 * 13 12 2 28 28 H 1.09000 * 108.93644 * 301.31116 * 13 12 2 29 29 H 1.08999 * 110.01882 * 184.56084 * 14 13 12 30 30 H 1.08992 * 110.02074 * 63.10945 * 14 13 12 31 31 H 1.08995 * 110.59907 * 322.94517 * 17 15 14 32 32 H 1.08995 * 110.59704 * 85.89112 * 17 15 14 33 33 H 1.09004 * 110.13756 * 244.26693 * 19 18 17 34 34 H 1.08995 * 110.19977 * 122.57340 * 19 18 17 35 35 H 1.08999 * 110.00125 * 294.91691 * 22 12 2 36 36 H 1.08994 * 110.00666 * 56.31242 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3224 -1.1192 -4.0081 9 1 3.1473 -2.2861 -3.6040 10 1 1.1677 -1.5863 -4.8167 11 1 3.1471 -0.1853 -4.8162 12 7 2.0197 -0.6926 1.1993 13 6 1.5305 -2.0703 1.2456 14 6 2.0158 -2.8175 2.5010 15 6 3.5288 -2.7337 2.4973 16 1 3.9364 -3.1483 1.5753 17 6 4.2717 -3.2832 3.7150 18 8 5.5328 -2.5360 3.6927 19 6 5.3494 -1.2847 2.9907 20 6 3.8734 -1.2184 2.6299 21 1 3.3045 -0.7787 3.4492 22 6 3.4884 -0.5724 1.3179 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7081 1.1611 -3.4844 27 1 1.8819 -2.6004 0.3604 28 1 0.4406 -2.0590 1.2397 29 1 1.6997 -3.8598 2.4603 30 1 1.6177 -2.3403 3.3964 31 1 3.7176 -3.0723 4.6296 32 1 4.4438 -4.3542 3.6080 33 1 5.9579 -1.2689 2.0864 34 1 5.6158 -0.4482 3.6366 35 1 3.9729 -1.0912 0.4907 36 1 3.7776 0.4784 1.3207 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690736226.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:49 Heat of formation + Delta-G solvation = -42.923193 kcal Electronic energy + Delta-G solvation = -16553.979103 eV Core-core repulsion = 14037.860085 eV Total energy + Delta-G solvation = -2516.119017 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.96378 -37.01782 -33.88555 -31.86567 -31.17216 -28.68129 -27.58425 -25.16813 -24.03606 -22.41274 -21.03930 -19.86366 -19.30511 -16.44360 -15.71748 -15.48994 -15.00776 -14.68504 -14.30678 -14.09447 -13.34114 -13.02253 -12.88090 -12.33953 -12.26484 -11.71700 -11.59822 -11.16026 -10.99612 -10.81281 -10.62014 -10.52040 -10.34167 -10.13890 -10.06498 -9.64569 -9.57519 -9.38356 -9.18065 -8.42605 -7.11064 -6.01809 -4.15039 3.23157 3.32016 3.35040 3.97423 4.36680 4.49282 4.81440 5.03134 5.21315 5.26112 5.40263 5.54531 5.65020 5.74441 5.82226 5.89759 6.01126 6.08395 6.17475 6.24295 6.39782 6.43826 6.59267 6.70664 6.84159 6.92332 6.94744 7.04155 7.17932 7.54378 7.70272 7.94166 8.13809 8.30632 8.44617 8.94664 9.52824 10.97914 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035116 B = 0.008088 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.164862 B = 3461.044055 C = 3714.838758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.541 4.541 5 H 0.055 0.945 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.549 5.549 13 C 0.066 3.934 14 C -0.103 4.103 15 C -0.131 4.131 16 H 0.082 0.918 17 C 0.060 3.940 18 O -0.399 6.399 19 C 0.061 3.939 20 C -0.125 4.125 21 H 0.085 0.915 22 C 0.086 3.914 23 H 0.014 0.986 24 H 0.084 0.916 25 H 0.027 0.973 26 H 0.261 0.739 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.498 -5.206 9.189 11.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.105 3.895 3 H 0.057 0.943 4 C -0.580 4.580 5 H 0.073 0.927 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.715 3.285 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.274 5.274 13 C -0.063 4.063 14 C -0.141 4.141 15 C -0.150 4.150 16 H 0.100 0.900 17 C -0.016 4.016 18 O -0.319 6.319 19 C -0.016 4.016 20 C -0.144 4.144 21 H 0.104 0.896 22 C -0.042 4.042 23 H 0.034 0.966 24 H 0.102 0.898 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.403 -4.923 9.519 11.244 hybrid contribution 0.430 -0.778 -1.832 2.036 sum 3.832 -5.701 7.688 10.309 Atomic orbital electron populations 1.21830 0.97787 0.99123 1.00288 1.19217 0.92232 0.93976 0.84057 0.94330 1.21734 1.31704 1.12825 0.91727 0.92685 1.24910 0.94855 0.94842 0.98881 1.69887 1.36466 1.22772 1.23369 0.86625 0.78713 0.79763 0.83419 1.19984 1.20977 1.20970 1.61612 1.08696 1.14315 1.42775 1.21838 0.99877 0.89567 0.94985 1.21431 0.93048 0.99719 0.99880 1.22621 0.97336 0.96260 0.98792 0.89976 1.23268 0.84837 0.95993 0.97461 1.89098 1.32621 1.32337 1.77856 1.22679 0.96232 0.86279 0.96383 1.22437 0.95058 0.96273 1.00634 0.89637 1.21407 0.89841 0.99756 0.93167 0.96643 0.89784 0.95411 0.92932 0.94532 0.91162 0.92011 0.91516 0.91958 0.89941 0.91489 0.91164 0.94105 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.69 37.16 0.32 -2.83 16 2 C 0.21 5.18 2.34 -68.87 -0.16 5.02 16 3 H 0.04 1.05 8.10 -51.93 -0.42 0.62 16 4 C -0.54 -14.31 7.14 -34.44 -0.25 -14.55 16 5 H 0.06 1.48 6.09 -52.48 -0.32 1.16 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.89 -24.80 11.32 55.43 0.63 -24.17 16 8 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 N -0.55 -11.41 4.49 -228.27 -1.03 -12.43 16 13 C 0.07 1.25 4.81 -3.67 -0.02 1.23 16 14 C -0.10 -1.54 5.87 -26.98 -0.16 -1.70 16 15 C -0.13 -1.96 2.52 -89.85 -0.23 -2.18 16 16 H 0.08 1.34 8.03 -51.93 -0.42 0.92 16 17 C 0.06 0.80 7.56 37.08 0.28 1.08 16 18 O -0.40 -6.16 11.53 -35.23 -0.41 -6.57 16 19 C 0.06 0.88 7.52 36.69 0.28 1.16 16 20 C -0.13 -1.95 2.46 -90.40 -0.22 -2.17 16 21 H 0.09 1.35 7.95 -51.92 -0.41 0.93 16 22 C 0.09 1.63 4.99 -4.21 -0.02 1.61 16 23 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 25 H 0.03 0.63 6.35 -51.93 -0.33 0.30 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.04 0.77 6.47 -51.93 -0.34 0.44 16 28 H 0.07 1.36 6.16 -51.93 -0.32 1.04 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.96 8.00 -51.93 -0.42 0.55 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.04 0.84 7.01 -51.93 -0.36 0.48 16 36 H 0.07 1.28 8.12 -51.93 -0.42 0.85 16 LS Contribution 272.88 15.07 4.11 4.11 Total: -1.00 -27.68 272.88 -7.72 -35.40 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.74 Total: -0.74 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.27 Total: -11.61 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.40 Total: -36.61 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.41 Total: -6.57 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.68 -7.72 -35.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690736226.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.519 kcal (2) G-P(sol) polarization free energy of solvation -27.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds