Wall clock time and date at job start Mon Mar 30 2020 03:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46965 * 2 1 4 4 C 1.50700 * 109.46781 * 240.00638 * 2 1 3 5 5 H 1.08007 * 120.00027 * 239.99918 * 4 2 1 6 6 C 1.37881 * 120.00436 * 60.00015 * 4 2 1 7 7 N 1.31512 * 119.99782 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00239 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46907 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47333 * 119.99568 * 8 6 4 11 11 H 1.48500 * 109.46990 * 239.99885 * 8 6 4 12 12 N 1.46893 * 109.47338 * 120.00497 * 2 1 3 13 13 C 1.46273 * 111.00162 * 58.95356 * 12 2 1 14 14 C 1.53941 * 112.18062 * 180.61683 * 13 12 2 15 15 C 1.51540 * 106.61508 * 303.83243 * 14 13 12 16 16 H 1.09002 * 110.75203 * 303.04880 * 15 14 13 17 17 C 1.52852 * 117.60956 * 174.21603 * 15 14 13 18 18 O 1.46608 * 102.86779 * 204.84460 * 17 15 14 19 19 C 1.44649 * 109.82703 * 24.45873 * 18 17 15 20 20 C 1.52090 * 106.01706 * 3.40321 * 19 18 17 21 21 H 1.09008 * 110.22795 * 87.13911 * 20 19 18 22 22 C 1.47834 * 110.99970 * 186.79531 * 12 2 1 23 23 H 1.09003 * 109.46970 * 299.99140 * 1 2 3 24 24 H 1.08997 * 109.47335 * 59.99384 * 1 2 3 25 25 H 1.09002 * 109.46708 * 179.97438 * 1 2 3 26 26 H 0.96999 * 119.99866 * 180.02562 * 7 6 4 27 27 H 1.09000 * 108.93941 * 59.91992 * 13 12 2 28 28 H 1.09000 * 108.93644 * 301.31116 * 13 12 2 29 29 H 1.08999 * 110.01882 * 184.56084 * 14 13 12 30 30 H 1.08992 * 110.02074 * 63.10945 * 14 13 12 31 31 H 1.08995 * 110.59907 * 322.94517 * 17 15 14 32 32 H 1.08995 * 110.59704 * 85.89112 * 17 15 14 33 33 H 1.09004 * 110.13756 * 244.26693 * 19 18 17 34 34 H 1.08995 * 110.19977 * 122.57340 * 19 18 17 35 35 H 1.08999 * 110.00125 * 294.91691 * 22 12 2 36 36 H 1.08994 * 110.00666 * 56.31242 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3224 -1.1192 -4.0081 9 1 3.1473 -2.2861 -3.6040 10 1 1.1677 -1.5863 -4.8167 11 1 3.1471 -0.1853 -4.8162 12 7 2.0197 -0.6926 1.1993 13 6 1.5305 -2.0703 1.2456 14 6 2.0158 -2.8175 2.5010 15 6 3.5288 -2.7337 2.4973 16 1 3.9364 -3.1483 1.5753 17 6 4.2717 -3.2832 3.7150 18 8 5.5328 -2.5360 3.6927 19 6 5.3494 -1.2847 2.9907 20 6 3.8734 -1.2184 2.6299 21 1 3.3045 -0.7787 3.4492 22 6 3.4884 -0.5724 1.3179 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7081 1.1611 -3.4844 27 1 1.8819 -2.6004 0.3604 28 1 0.4406 -2.0590 1.2397 29 1 1.6997 -3.8598 2.4603 30 1 1.6177 -2.3403 3.3964 31 1 3.7176 -3.0723 4.6296 32 1 4.4438 -4.3542 3.6080 33 1 5.9579 -1.2689 2.0864 34 1 5.6158 -0.4482 3.6366 35 1 3.9729 -1.0912 0.4907 36 1 3.7776 0.4784 1.3207 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690736226.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:49 Heat of formation + Delta-G solvation = -60.846674 kcal Electronic energy + Delta-G solvation = -16554.756323 eV Core-core repulsion = 14037.860085 eV Total energy + Delta-G solvation = -2516.896238 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.26130 -38.55078 -35.57323 -33.61783 -32.54794 -30.36264 -28.89881 -27.23736 -25.45732 -23.94746 -22.26477 -21.33668 -20.98556 -18.34645 -17.08950 -16.98106 -16.51323 -16.02027 -15.82803 -15.71046 -14.92815 -14.66824 -14.22040 -13.79832 -13.67728 -13.46364 -13.08342 -12.97268 -12.73654 -12.61680 -12.25425 -12.02049 -11.92906 -11.80771 -11.69406 -11.27389 -11.13639 -10.93107 -10.51010 -10.50944 -8.91598 -8.06541 -6.29182 1.33388 1.36656 1.45848 2.37116 2.87671 3.10063 3.15808 3.42163 3.80703 3.96505 4.20294 4.34420 4.42310 4.52373 4.55528 4.68034 4.74678 4.80636 4.87920 4.92847 4.96593 5.01736 5.05468 5.12302 5.20048 5.24577 5.26911 5.42935 5.53113 5.69325 5.83384 5.98708 6.17506 6.34411 6.69290 6.91136 7.41896 8.89109 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035116 B = 0.008088 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.164862 B = 3461.044055 C = 3714.838758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.214 3.786 3 H 0.006 0.994 4 C -0.546 4.546 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.946 3.054 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.280 1.280 12 N -0.547 5.547 13 C 0.066 3.934 14 C -0.090 4.090 15 C -0.128 4.128 16 H 0.064 0.936 17 C 0.065 3.935 18 O -0.414 6.414 19 C 0.065 3.935 20 C -0.118 4.118 21 H 0.092 0.908 22 C 0.089 3.911 23 H 0.030 0.970 24 H 0.058 0.942 25 H 0.032 0.968 26 H 0.262 0.738 27 H 0.010 0.990 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.017 0.983 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.866 -6.521 10.489 12.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.107 3.893 3 H 0.024 0.976 4 C -0.585 4.585 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.773 3.227 9 H -0.199 1.199 10 H -0.204 1.204 11 H -0.206 1.206 12 N -0.272 5.272 13 C -0.062 4.062 14 C -0.128 4.128 15 C -0.147 4.147 16 H 0.082 0.918 17 C -0.010 4.010 18 O -0.334 6.334 19 C -0.012 4.012 20 C -0.137 4.137 21 H 0.110 0.890 22 C -0.039 4.039 23 H 0.049 0.951 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.028 0.972 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.035 0.965 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.776 -6.249 10.832 13.063 hybrid contribution 0.314 -0.350 -2.228 2.277 sum 4.090 -6.599 8.605 11.589 Atomic orbital electron populations 1.21650 0.97272 0.99194 0.99741 1.19015 0.92626 0.92552 0.85153 0.97590 1.21905 1.31394 1.12486 0.92765 0.93580 1.25610 0.95181 0.95568 1.01559 1.69999 1.37329 1.23831 1.23995 0.85689 0.78229 0.78659 0.80142 1.19892 1.20432 1.20621 1.61561 1.09821 1.15369 1.40419 1.21891 0.99607 0.88426 0.96308 1.21349 0.92913 1.00603 0.97917 1.22577 0.97402 0.95576 0.99155 0.91779 1.23392 0.83821 0.96777 0.97024 1.89086 1.33838 1.32620 1.77896 1.22675 0.94990 0.86809 0.96732 1.22309 0.96331 0.96590 0.98496 0.88988 1.21367 0.88523 0.99498 0.94501 0.95129 0.92286 0.94904 0.92827 0.97207 0.91596 0.89485 0.90101 0.90045 0.88018 0.91908 0.89330 0.96482 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.69 71.98 0.63 -5.18 16 2 C 0.21 10.72 2.34 44.17 0.10 10.82 16 3 H 0.01 0.35 8.10 -2.39 -0.02 0.33 16 4 C -0.55 -29.51 7.14 25.60 0.18 -29.33 16 5 H 0.05 2.53 6.09 -2.91 -0.02 2.51 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -51.93 11.32 21.45 0.24 -51.69 16 8 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 N -0.55 -22.77 4.49 -876.11 -3.94 -26.71 16 13 C 0.07 2.45 4.81 86.74 0.42 2.87 16 14 C -0.09 -2.45 5.87 30.43 0.18 -2.27 16 15 C -0.13 -3.53 2.52 -10.30 -0.03 -3.56 16 16 H 0.06 2.01 8.03 -2.39 -0.02 1.99 16 17 C 0.07 1.50 7.56 71.93 0.54 2.04 16 18 O -0.41 -11.63 11.53 -148.98 -1.72 -13.35 16 19 C 0.06 1.74 7.52 71.68 0.54 2.28 16 20 C -0.12 -3.51 2.46 -10.65 -0.03 -3.53 16 21 H 0.09 2.66 7.95 -2.38 -0.02 2.64 16 22 C 0.09 3.39 4.99 85.54 0.43 3.82 16 23 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 25 H 0.03 1.50 6.35 -2.39 -0.02 1.48 16 26 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 27 H 0.01 0.41 6.47 -2.39 -0.02 0.40 16 28 H 0.07 2.49 6.16 -2.39 -0.01 2.47 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 2.03 8.00 -2.39 -0.02 2.01 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 1.73 8.09 -2.38 -0.02 1.71 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.02 0.72 7.01 -2.39 -0.02 0.71 16 36 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 Total: -1.00 -59.31 272.88 1.07 -58.24 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.04 Total: 8.39 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 3.41 Total: -20.47 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -3.69 Total: -78.40 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -1.72 Total: -13.35 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -59.31 1.07 -58.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690736226.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.605 kcal (2) G-P(sol) polarization free energy of solvation -59.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds