Wall clock time and date at job start Mon Mar 30 2020 03:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47611 * 2 1 4 4 C 1.50706 * 109.47238 * 239.99389 * 2 1 3 5 5 H 1.07999 * 120.00196 * 240.00405 * 4 2 1 6 6 C 1.37879 * 119.99394 * 60.00273 * 4 2 1 7 7 N 1.31514 * 120.00338 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99426 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47361 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47264 * 120.00115 * 8 6 4 11 11 H 1.48500 * 109.46969 * 239.99720 * 8 6 4 12 12 N 1.46902 * 109.47094 * 120.00004 * 2 1 3 13 13 C 1.47159 * 110.99999 * 176.04714 * 12 2 1 14 14 C 1.52883 * 108.26668 * 171.19933 * 13 12 2 15 15 C 1.51223 * 111.20052 * 58.61565 * 14 13 12 16 16 H 1.09000 * 109.68649 * 187.33629 * 15 14 13 17 17 C 1.53642 * 112.46808 * 64.98728 * 15 14 13 18 18 O 1.43795 * 106.77610 * 214.56778 * 17 15 14 19 19 C 1.43937 * 109.62743 * 358.72513 * 18 17 15 20 20 C 1.54517 * 112.63489 * 309.50769 * 15 14 13 21 21 H 1.08996 * 112.94632 * 278.99055 * 20 15 14 22 22 C 1.46476 * 111.00338 * 53.19501 * 12 2 1 23 23 H 1.09001 * 109.46832 * 60.00297 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00488 * 1 2 3 26 26 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.70432 * 290.88725 * 13 12 2 28 28 H 1.09003 * 109.70996 * 51.46923 * 13 12 2 29 29 H 1.08997 * 109.13348 * 179.05881 * 14 13 12 30 30 H 1.08999 * 109.12875 * 298.23535 * 14 13 12 31 31 H 1.09001 * 109.99877 * 333.90485 * 17 15 14 32 32 H 1.09006 * 110.00074 * 95.19471 * 17 15 14 33 33 H 1.09002 * 110.42579 * 144.85654 * 19 18 17 34 34 H 1.08999 * 110.42598 * 267.21527 * 19 18 17 35 35 H 1.08997 * 109.17424 * 307.53983 * 22 12 2 36 36 H 1.09000 * 109.17192 * 66.76090 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1464 -2.2873 -3.6036 10 1 1.1661 -1.5870 -4.8160 11 1 3.1466 -0.1877 -4.8164 12 7 2.0196 -0.6925 1.1994 13 6 3.4876 -0.7947 1.1870 14 6 3.9430 -1.3197 2.5488 15 6 3.3246 -2.6664 2.8503 16 1 3.5592 -2.9572 3.8743 17 6 3.7978 -3.7601 1.8805 18 8 2.6844 -4.6481 1.6812 19 6 1.5670 -4.2080 2.4745 20 6 1.7924 -2.6753 2.6510 21 1 1.2510 -2.2578 3.4998 22 6 1.4223 -2.0247 1.3172 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7082 1.1606 -3.4844 27 1 3.8014 -1.4846 0.4036 28 1 3.9231 0.1883 1.0073 29 1 5.0286 -1.4169 2.5494 30 1 3.6473 -0.6107 3.3220 31 1 4.0934 -3.3139 0.9309 32 1 4.6369 -4.3047 2.3134 33 1 0.6302 -4.3968 1.9500 34 1 1.5673 -4.7084 3.4428 35 1 0.3378 -1.9380 1.2499 36 1 1.7818 -2.6516 0.5011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690736228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:50 Heat of formation + Delta-G solvation = -62.490704 kcal Electronic energy + Delta-G solvation = -16863.206249 eV Core-core repulsion = 14346.238720 eV Total energy + Delta-G solvation = -2516.967528 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.47793 -38.44370 -35.56036 -33.74593 -32.41835 -30.54317 -28.35401 -27.36497 -25.74337 -24.14215 -22.51556 -21.60142 -19.99216 -18.21222 -17.50069 -16.95576 -16.73484 -15.96131 -15.93555 -15.73517 -14.79656 -14.48307 -14.22201 -13.88000 -13.63369 -13.21337 -13.15141 -12.92285 -12.80716 -12.57125 -12.20775 -12.06062 -12.03047 -11.88517 -11.48512 -11.38919 -11.05592 -10.85313 -10.52461 -10.39013 -8.96273 -8.06994 -6.29198 1.32096 1.35390 1.45341 2.36891 2.94777 3.11891 3.38282 3.54088 3.81979 4.02990 4.28067 4.30277 4.40308 4.48546 4.52510 4.68316 4.73302 4.83024 4.86476 4.93855 5.01003 5.05116 5.06962 5.17772 5.22677 5.28205 5.33232 5.44037 5.52534 5.68642 5.97181 6.04573 6.17444 6.36463 6.63610 6.91619 7.41904 8.88749 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030525 B = 0.009597 C = 0.008871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.063122 B = 2916.916715 C = 3155.769817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.207 3.793 3 H 0.007 0.993 4 C -0.546 4.546 5 H 0.045 0.955 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.944 3.056 9 H -0.276 1.276 10 H -0.279 1.279 11 H -0.278 1.278 12 N -0.528 5.528 13 C 0.059 3.941 14 C -0.095 4.095 15 C -0.108 4.108 16 H 0.107 0.893 17 C 0.051 3.949 18 O -0.412 6.412 19 C 0.051 3.949 20 C -0.108 4.108 21 H 0.118 0.882 22 C 0.067 3.933 23 H 0.059 0.941 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.262 0.738 27 H 0.016 0.984 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.594 -6.911 11.611 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.099 3.901 3 H 0.025 0.975 4 C -0.585 4.585 5 H 0.063 0.937 6 C -0.178 4.178 7 N -0.551 5.551 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.205 1.205 11 H -0.203 1.203 12 N -0.252 5.252 13 C -0.069 4.069 14 C -0.132 4.132 15 C -0.127 4.127 16 H 0.125 0.875 17 C -0.025 4.025 18 O -0.333 6.333 19 C -0.025 4.025 20 C -0.127 4.127 21 H 0.136 0.864 22 C -0.061 4.061 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 3.375 -6.684 11.753 13.936 hybrid contribution 0.384 -0.406 -2.092 2.166 sum 3.760 -7.090 9.661 12.559 Atomic orbital electron populations 1.21687 0.97380 0.99071 0.99891 1.19102 0.92611 0.92778 0.85562 0.97460 1.21919 1.31419 1.12365 0.92833 0.93723 1.25589 0.95181 0.95565 1.01478 1.69994 1.37319 1.23817 1.23946 0.85722 0.78280 0.78680 0.80259 1.20129 1.20471 1.20319 1.62711 1.05891 1.17425 1.39150 1.21992 0.89027 0.99301 0.96628 1.21014 1.00258 0.95556 0.96419 1.22027 0.94734 0.95283 1.00648 0.87480 1.23222 0.89680 0.90835 0.98799 1.88501 1.23539 1.52180 1.69040 1.23805 0.89504 0.93171 0.96068 1.22986 0.96483 0.95112 0.98123 0.86413 1.21864 0.99207 0.89608 0.95432 0.92233 0.95005 0.94961 0.92835 0.96590 0.92689 0.89988 0.90243 0.93732 0.89431 0.90105 0.89454 0.91864 0.97206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.01 8.52 71.98 0.61 -5.40 16 2 C 0.21 10.60 2.48 44.17 0.11 10.71 16 3 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 4 C -0.55 -30.30 7.23 25.60 0.18 -30.12 16 5 H 0.04 2.55 5.77 -2.91 -0.02 2.53 16 6 C 0.02 1.21 5.30 84.66 0.45 1.66 16 7 N -0.91 -52.65 11.32 21.45 0.24 -52.41 16 8 Si 0.94 44.70 29.54 68.60 2.03 46.73 16 9 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 N -0.53 -22.46 4.74 -876.14 -4.16 -26.61 16 13 C 0.06 2.28 4.77 86.21 0.41 2.69 16 14 C -0.09 -2.62 5.53 29.98 0.17 -2.45 16 15 C -0.11 -2.78 2.94 -10.64 -0.03 -2.81 16 16 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 17 C 0.05 1.47 6.70 72.20 0.48 1.96 16 18 O -0.41 -13.56 10.95 -148.98 -1.63 -15.19 16 19 C 0.05 1.35 7.01 72.99 0.51 1.87 16 20 C -0.11 -3.07 3.95 -9.29 -0.04 -3.11 16 21 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 22 C 0.07 2.61 3.73 86.37 0.32 2.93 16 23 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 24 H 0.03 1.50 6.16 -2.38 -0.01 1.48 16 25 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 27 H 0.02 0.69 5.06 -2.39 -0.01 0.68 16 28 H 0.05 2.21 8.10 -2.39 -0.02 2.19 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.04 1.53 6.37 -2.39 -0.02 1.52 16 32 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.08 2.17 8.01 -2.39 -0.02 2.15 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 2.52 5.73 -2.39 -0.01 2.50 16 36 H 0.01 0.44 5.98 -2.39 -0.01 0.43 16 Total: -1.00 -62.20 266.71 0.72 -61.48 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.06 Total: 8.07 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 3.18 Total: -22.06 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -3.91 Total: -79.02 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -1.63 Total: -15.19 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -62.20 0.72 -61.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690736228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.014 kcal (2) G-P(sol) polarization free energy of solvation -62.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds