Wall clock time and date at job start Mon Mar 30 2020 03:04:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09002 * 109.47485 * 2 1
4 4 C 1.50702 * 109.46903 * 239.99936 * 2 1 3
5 5 H 1.07993 * 120.00252 * 275.32285 * 4 2 1
6 6 C 1.37877 * 119.99908 * 95.32567 * 4 2 1
7 7 N 1.31513 * 119.99970 * 174.63409 * 6 4 2
8 8 Si 1.86802 * 119.99999 * 354.90970 * 6 4 2
9 9 H 1.48502 * 109.46835 * 94.74109 * 8 6 4
10 10 H 1.48501 * 109.46969 * 214.73576 * 8 6 4
11 11 H 1.48491 * 109.47222 * 334.73668 * 8 6 4
12 12 N 1.46893 * 109.47260 * 119.99920 * 2 1 3
13 13 C 1.45723 * 111.00421 * 176.04331 * 12 2 1
14 14 C 1.52382 * 110.24173 * 177.50066 * 13 12 2
15 15 C 1.52978 * 110.02415 * 61.16401 * 14 13 12
16 16 H 1.09005 * 112.09015 * 71.52607 * 15 14 13
17 17 C 1.55097 * 107.29729 * 195.32718 * 15 14 13
18 18 O 1.43502 * 107.26445 * 92.58242 * 17 15 14
19 19 C 1.43993 * 109.80328 * 359.20319 * 18 17 15
20 20 C 1.53991 * 110.19466 * 305.06287 * 15 14 13
21 21 H 1.09005 * 109.56730 * 166.97818 * 20 15 14
22 22 C 1.44606 * 110.99771 * 47.09774 * 12 2 1
23 23 H 1.09007 * 109.46948 * 54.23412 * 1 2 3
24 24 H 1.08994 * 109.47264 * 174.23351 * 1 2 3
25 25 H 1.08999 * 109.46724 * 294.23869 * 1 2 3
26 26 H 0.97001 * 120.00432 * 180.02562 * 7 6 4
27 27 H 1.09008 * 109.34671 * 297.73614 * 13 12 2
28 28 H 1.08998 * 109.34053 * 57.26461 * 13 12 2
29 29 H 1.09002 * 109.38043 * 181.33407 * 14 13 12
30 30 H 1.08996 * 109.37800 * 300.99909 * 14 13 12
31 31 H 1.09005 * 109.88008 * 211.99451 * 17 15 14
32 32 H 1.08999 * 109.88211 * 333.16242 * 17 15 14
33 33 H 1.08998 * 110.43892 * 143.29865 * 19 18 17
34 34 H 1.09000 * 110.43174 * 265.67610 * 19 18 17
35 35 H 1.08993 * 108.12643 * 293.45768 * 22 12 2
36 36 H 1.08999 * 108.12282 * 49.93608 * 22 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.1305 -1.7859 -1.2308
6 6 2.3665 0.0127 -2.3558
7 7 2.9036 -0.5940 -3.3917
8 14 2.0636 1.8553 -2.4062
9 1 3.3010 2.5714 -2.0044
10 1 1.6846 2.2571 -3.7846
11 1 0.9647 2.2020 -1.4696
12 7 2.0197 -0.6924 1.1994
13 6 3.4733 -0.7937 1.1871
14 6 3.9663 -1.4589 2.4664
15 6 3.3981 -2.8753 2.5728
16 1 3.8540 -3.5550 1.8528
17 6 3.6007 -3.3446 4.0371
18 8 2.4067 -3.0118 4.7601
19 6 1.4725 -2.3549 3.8831
20 6 1.8620 -2.8410 2.4702
21 1 1.4839 -3.8515 2.3148
22 6 1.3260 -1.9463 1.3933
23 1 -0.3633 0.6007 -0.8339
24 1 -0.3633 -1.0224 -0.1032
25 1 -0.3633 0.4219 0.9371
26 1 3.1392 -0.0852 -4.1833
27 1 3.7868 -1.3869 0.3279
28 1 3.9041 0.2045 1.1101
29 1 5.0552 -1.5061 2.4531
30 1 3.6417 -0.8735 3.3266
31 1 3.7609 -4.4226 4.0621
32 1 4.4556 -2.8304 4.4763
33 1 0.4518 -2.6548 4.1207
34 1 1.5772 -1.2725 3.9574
35 1 0.2839 -1.7252 1.6238
36 1 1.3500 -2.4962 0.4525
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000690736232.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:52
Heat of formation + Delta-G solvation = -47.055290 kcal
Electronic energy + Delta-G solvation = -16704.746680 eV
Core-core repulsion = 14188.448482 eV
Total energy + Delta-G solvation = -2516.298199 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.14738 -37.23098 -33.76253 -32.06144 -31.28913 -29.64287 -27.33420 -25.45394
-24.20372 -22.16569 -21.77580 -19.82666 -18.46720 -16.95620 -16.23538 -15.56742
-14.98376 -14.90099 -14.11780 -13.71294 -13.39171 -13.27965 -12.81280 -12.65895
-12.32400 -12.04750 -11.96038 -11.20355 -11.11457 -11.05996 -10.65108 -10.43844
-10.37708 -10.28425 -9.84350 -9.71248 -9.67222 -9.38448 -9.26830 -8.61226
-6.99839 -6.15944 -4.15939 3.22964 3.32952 3.36170 4.07563 4.35262
4.64511 4.82628 4.99033 5.10981 5.26202 5.34824 5.53204 5.63761
5.76964 5.86340 5.89764 5.98286 6.13650 6.20717 6.23677 6.33112
6.42006 6.46638 6.52904 6.62038 6.67117 6.74596 7.00017 7.11824
7.14744 7.18468 7.58346 8.17497 8.34486 8.42422 8.87880 9.48606
10.97074
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.045247 B = 0.008231 C = 0.007791
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 618.674378 B = 3400.806204 C = 3593.141755
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.180 3.820
3 H 0.042 0.958
4 C -0.539 4.539
5 H 0.072 0.928
6 C 0.075 3.925
7 N -0.897 5.897
8 Si 0.873 3.127
9 H -0.278 1.278
10 H -0.288 1.288
11 H -0.259 1.259
12 N -0.547 5.547
13 C 0.075 3.925
14 C -0.112 4.112
15 C -0.115 4.115
16 H 0.091 0.909
17 C 0.055 3.945
18 O -0.393 6.393
19 C 0.059 3.941
20 C -0.112 4.112
21 H 0.076 0.924
22 C 0.080 3.920
23 H 0.045 0.955
24 H 0.046 0.954
25 H 0.031 0.969
26 H 0.263 0.737
27 H 0.049 0.951
28 H 0.062 0.938
29 H 0.061 0.939
30 H 0.064 0.936
31 H 0.061 0.939
32 H 0.066 0.934
33 H 0.078 0.922
34 H 0.071 0.929
35 H 0.065 0.935
36 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.376 -2.302 11.229 11.469
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C 0.074 3.926
3 H 0.060 0.940
4 C -0.578 4.578
5 H 0.090 0.910
6 C -0.128 4.128
7 N -0.535 5.535
8 Si 0.700 3.300
9 H -0.204 1.204
10 H -0.214 1.214
11 H -0.183 1.183
12 N -0.272 5.272
13 C -0.053 4.053
14 C -0.150 4.150
15 C -0.134 4.134
16 H 0.110 0.890
17 C -0.022 4.022
18 O -0.313 6.313
19 C -0.017 4.017
20 C -0.131 4.131
21 H 0.094 0.906
22 C -0.048 4.048
23 H 0.064 0.936
24 H 0.065 0.935
25 H 0.050 0.950
26 H 0.073 0.927
27 H 0.067 0.933
28 H 0.081 0.919
29 H 0.080 0.920
30 H 0.083 0.917
31 H 0.080 0.920
32 H 0.084 0.916
33 H 0.096 0.904
34 H 0.089 0.911
35 H 0.083 0.917
36 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges -0.453 -2.058 11.643 11.832
hybrid contribution 0.150 0.435 -1.263 1.345
sum -0.303 -1.623 10.380 10.510
Atomic orbital electron populations
1.22071 0.98338 1.00440 0.98825 1.19622 0.91637 0.94475 0.86880
0.94023 1.21485 1.43871 0.95654 0.96754 0.90973 1.25018 0.93896
0.98291 0.95580 1.69930 1.41589 1.36465 1.05470 0.86917 0.79385
0.86153 0.77496 1.20385 1.21422 1.18347 1.60176 1.04904 1.21022
1.41105 1.21312 0.88550 0.99988 0.95495 1.21604 0.99302 0.94423
0.99691 1.22557 0.96009 0.98511 0.96295 0.89044 1.23390 0.88105
0.99298 0.91394 1.88430 1.27554 1.79094 1.36238 1.23437 0.92615
0.97705 0.87905 1.21946 0.95217 0.99964 0.95960 0.90575 1.20469
0.97745 0.90453 0.96157 0.93582 0.93517 0.95009 0.92681 0.93289
0.91944 0.92016 0.91684 0.92042 0.91579 0.90384 0.91060 0.91696
0.94480
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.88 8.04 37.16 0.30 -2.58 16
2 C 0.18 4.12 2.04 -68.87 -0.14 3.98 16
3 H 0.04 0.99 5.58 -51.93 -0.29 0.70 16
4 C -0.54 -14.36 6.98 -34.44 -0.24 -14.60 16
5 H 0.07 2.13 6.93 -52.49 -0.36 1.77 16
6 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16
7 N -0.90 -26.69 13.96 55.43 0.77 -25.91 16
8 Si 0.87 20.93 26.62 -169.99 -4.53 16.41 16
9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
11 H -0.26 -5.92 5.99 56.52 0.34 -5.58 16
12 N -0.55 -11.00 4.58 -233.26 -1.07 -12.07 16
13 C 0.07 1.45 5.10 -4.78 -0.02 1.42 16
14 C -0.11 -1.75 4.92 -27.06 -0.13 -1.88 16
15 C -0.12 -1.69 3.60 -89.01 -0.32 -2.01 16
16 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16
17 C 0.05 0.73 7.18 38.27 0.27 1.01 16
18 O -0.39 -6.05 11.39 -35.23 -0.40 -6.45 16
19 C 0.06 0.87 6.73 37.90 0.25 1.12 16
20 C -0.11 -1.72 2.98 -90.89 -0.27 -1.99 16
21 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
22 C 0.08 1.46 3.88 -6.58 -0.03 1.44 16
23 H 0.05 0.97 7.02 -51.92 -0.36 0.61 16
24 H 0.05 0.94 6.85 -51.93 -0.36 0.58 16
25 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16
26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
27 H 0.05 1.09 7.02 -51.92 -0.36 0.73 16
28 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16
29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
30 H 0.06 1.02 7.12 -51.93 -0.37 0.65 16
31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
32 H 0.07 0.82 7.76 -51.93 -0.40 0.41 16
33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16
34 H 0.07 1.10 7.55 -51.93 -0.39 0.71 16
35 H 0.06 1.13 6.56 -51.93 -0.34 0.79 16
36 H 0.04 0.77 6.51 -51.93 -0.34 0.44 16
LS Contribution 267.85 15.07 4.04 4.04
Total: -1.00 -28.74 267.85 -7.35 -36.09
By element:
Atomic # 1 Polarization: 5.75 SS G_CDS: -5.74 Total: 0.01 kcal
Atomic # 6 Polarization: -11.69 SS G_CDS: -0.42 Total: -12.11 kcal
Atomic # 7 Polarization: -37.68 SS G_CDS: -0.30 Total: -37.98 kcal
Atomic # 8 Polarization: -6.05 SS G_CDS: -0.40 Total: -6.45 kcal
Atomic # 14 Polarization: 20.93 SS G_CDS: -4.53 Total: 16.41 kcal
Total LS contribution 4.04 Total: 4.04 kcal
Total: -28.74 -7.35 -36.09 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000690736232.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.967 kcal
(2) G-P(sol) polarization free energy of solvation -28.740 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.707 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.088 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.055 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds