Wall clock time and date at job start Mon Mar 30 2020 03:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47485 * 2 1 4 4 C 1.50702 * 109.46903 * 239.99936 * 2 1 3 5 5 H 1.07993 * 120.00252 * 275.32285 * 4 2 1 6 6 C 1.37877 * 119.99908 * 95.32567 * 4 2 1 7 7 N 1.31513 * 119.99970 * 174.63409 * 6 4 2 8 8 Si 1.86802 * 119.99999 * 354.90970 * 6 4 2 9 9 H 1.48502 * 109.46835 * 94.74109 * 8 6 4 10 10 H 1.48501 * 109.46969 * 214.73576 * 8 6 4 11 11 H 1.48491 * 109.47222 * 334.73668 * 8 6 4 12 12 N 1.46893 * 109.47260 * 119.99920 * 2 1 3 13 13 C 1.45723 * 111.00421 * 176.04331 * 12 2 1 14 14 C 1.52382 * 110.24173 * 177.50066 * 13 12 2 15 15 C 1.52978 * 110.02415 * 61.16401 * 14 13 12 16 16 H 1.09005 * 112.09015 * 71.52607 * 15 14 13 17 17 C 1.55097 * 107.29729 * 195.32718 * 15 14 13 18 18 O 1.43502 * 107.26445 * 92.58242 * 17 15 14 19 19 C 1.43993 * 109.80328 * 359.20319 * 18 17 15 20 20 C 1.53991 * 110.19466 * 305.06287 * 15 14 13 21 21 H 1.09005 * 109.56730 * 166.97818 * 20 15 14 22 22 C 1.44606 * 110.99771 * 47.09774 * 12 2 1 23 23 H 1.09007 * 109.46948 * 54.23412 * 1 2 3 24 24 H 1.08994 * 109.47264 * 174.23351 * 1 2 3 25 25 H 1.08999 * 109.46724 * 294.23869 * 1 2 3 26 26 H 0.97001 * 120.00432 * 180.02562 * 7 6 4 27 27 H 1.09008 * 109.34671 * 297.73614 * 13 12 2 28 28 H 1.08998 * 109.34053 * 57.26461 * 13 12 2 29 29 H 1.09002 * 109.38043 * 181.33407 * 14 13 12 30 30 H 1.08996 * 109.37800 * 300.99909 * 14 13 12 31 31 H 1.09005 * 109.88008 * 211.99451 * 17 15 14 32 32 H 1.08999 * 109.88211 * 333.16242 * 17 15 14 33 33 H 1.08998 * 110.43892 * 143.29865 * 19 18 17 34 34 H 1.09000 * 110.43174 * 265.67610 * 19 18 17 35 35 H 1.08993 * 108.12643 * 293.45768 * 22 12 2 36 36 H 1.08999 * 108.12282 * 49.93608 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1305 -1.7859 -1.2308 6 6 2.3665 0.0127 -2.3558 7 7 2.9036 -0.5940 -3.3917 8 14 2.0636 1.8553 -2.4062 9 1 3.3010 2.5714 -2.0044 10 1 1.6846 2.2571 -3.7846 11 1 0.9647 2.2020 -1.4696 12 7 2.0197 -0.6924 1.1994 13 6 3.4733 -0.7937 1.1871 14 6 3.9663 -1.4589 2.4664 15 6 3.3981 -2.8753 2.5728 16 1 3.8540 -3.5550 1.8528 17 6 3.6007 -3.3446 4.0371 18 8 2.4067 -3.0118 4.7601 19 6 1.4725 -2.3549 3.8831 20 6 1.8620 -2.8410 2.4702 21 1 1.4839 -3.8515 2.3148 22 6 1.3260 -1.9463 1.3933 23 1 -0.3633 0.6007 -0.8339 24 1 -0.3633 -1.0224 -0.1032 25 1 -0.3633 0.4219 0.9371 26 1 3.1392 -0.0852 -4.1833 27 1 3.7868 -1.3869 0.3279 28 1 3.9041 0.2045 1.1101 29 1 5.0552 -1.5061 2.4531 30 1 3.6417 -0.8735 3.3266 31 1 3.7609 -4.4226 4.0621 32 1 4.4556 -2.8304 4.4763 33 1 0.4518 -2.6548 4.1207 34 1 1.5772 -1.2725 3.9574 35 1 0.2839 -1.7252 1.6238 36 1 1.3500 -2.4962 0.4525 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690736232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:52 Heat of formation + Delta-G solvation = -47.055290 kcal Electronic energy + Delta-G solvation = -16704.746680 eV Core-core repulsion = 14188.448482 eV Total energy + Delta-G solvation = -2516.298199 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.14738 -37.23098 -33.76253 -32.06144 -31.28913 -29.64287 -27.33420 -25.45394 -24.20372 -22.16569 -21.77580 -19.82666 -18.46720 -16.95620 -16.23538 -15.56742 -14.98376 -14.90099 -14.11780 -13.71294 -13.39171 -13.27965 -12.81280 -12.65895 -12.32400 -12.04750 -11.96038 -11.20355 -11.11457 -11.05996 -10.65108 -10.43844 -10.37708 -10.28425 -9.84350 -9.71248 -9.67222 -9.38448 -9.26830 -8.61226 -6.99839 -6.15944 -4.15939 3.22964 3.32952 3.36170 4.07563 4.35262 4.64511 4.82628 4.99033 5.10981 5.26202 5.34824 5.53204 5.63761 5.76964 5.86340 5.89764 5.98286 6.13650 6.20717 6.23677 6.33112 6.42006 6.46638 6.52904 6.62038 6.67117 6.74596 7.00017 7.11824 7.14744 7.18468 7.58346 8.17497 8.34486 8.42422 8.87880 9.48606 10.97074 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045247 B = 0.008231 C = 0.007791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.674378 B = 3400.806204 C = 3593.141755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.180 3.820 3 H 0.042 0.958 4 C -0.539 4.539 5 H 0.072 0.928 6 C 0.075 3.925 7 N -0.897 5.897 8 Si 0.873 3.127 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.259 1.259 12 N -0.547 5.547 13 C 0.075 3.925 14 C -0.112 4.112 15 C -0.115 4.115 16 H 0.091 0.909 17 C 0.055 3.945 18 O -0.393 6.393 19 C 0.059 3.941 20 C -0.112 4.112 21 H 0.076 0.924 22 C 0.080 3.920 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.031 0.969 26 H 0.263 0.737 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 -2.302 11.229 11.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.074 3.926 3 H 0.060 0.940 4 C -0.578 4.578 5 H 0.090 0.910 6 C -0.128 4.128 7 N -0.535 5.535 8 Si 0.700 3.300 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.183 1.183 12 N -0.272 5.272 13 C -0.053 4.053 14 C -0.150 4.150 15 C -0.134 4.134 16 H 0.110 0.890 17 C -0.022 4.022 18 O -0.313 6.313 19 C -0.017 4.017 20 C -0.131 4.131 21 H 0.094 0.906 22 C -0.048 4.048 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.453 -2.058 11.643 11.832 hybrid contribution 0.150 0.435 -1.263 1.345 sum -0.303 -1.623 10.380 10.510 Atomic orbital electron populations 1.22071 0.98338 1.00440 0.98825 1.19622 0.91637 0.94475 0.86880 0.94023 1.21485 1.43871 0.95654 0.96754 0.90973 1.25018 0.93896 0.98291 0.95580 1.69930 1.41589 1.36465 1.05470 0.86917 0.79385 0.86153 0.77496 1.20385 1.21422 1.18347 1.60176 1.04904 1.21022 1.41105 1.21312 0.88550 0.99988 0.95495 1.21604 0.99302 0.94423 0.99691 1.22557 0.96009 0.98511 0.96295 0.89044 1.23390 0.88105 0.99298 0.91394 1.88430 1.27554 1.79094 1.36238 1.23437 0.92615 0.97705 0.87905 1.21946 0.95217 0.99964 0.95960 0.90575 1.20469 0.97745 0.90453 0.96157 0.93582 0.93517 0.95009 0.92681 0.93289 0.91944 0.92016 0.91684 0.92042 0.91579 0.90384 0.91060 0.91696 0.94480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.04 37.16 0.30 -2.58 16 2 C 0.18 4.12 2.04 -68.87 -0.14 3.98 16 3 H 0.04 0.99 5.58 -51.93 -0.29 0.70 16 4 C -0.54 -14.36 6.98 -34.44 -0.24 -14.60 16 5 H 0.07 2.13 6.93 -52.49 -0.36 1.77 16 6 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -26.69 13.96 55.43 0.77 -25.91 16 8 Si 0.87 20.93 26.62 -169.99 -4.53 16.41 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.26 -5.92 5.99 56.52 0.34 -5.58 16 12 N -0.55 -11.00 4.58 -233.26 -1.07 -12.07 16 13 C 0.07 1.45 5.10 -4.78 -0.02 1.42 16 14 C -0.11 -1.75 4.92 -27.06 -0.13 -1.88 16 15 C -0.12 -1.69 3.60 -89.01 -0.32 -2.01 16 16 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 17 C 0.05 0.73 7.18 38.27 0.27 1.01 16 18 O -0.39 -6.05 11.39 -35.23 -0.40 -6.45 16 19 C 0.06 0.87 6.73 37.90 0.25 1.12 16 20 C -0.11 -1.72 2.98 -90.89 -0.27 -1.99 16 21 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 22 C 0.08 1.46 3.88 -6.58 -0.03 1.44 16 23 H 0.05 0.97 7.02 -51.92 -0.36 0.61 16 24 H 0.05 0.94 6.85 -51.93 -0.36 0.58 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.05 1.09 7.02 -51.92 -0.36 0.73 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.02 7.12 -51.93 -0.37 0.65 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.82 7.76 -51.93 -0.40 0.41 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.10 7.55 -51.93 -0.39 0.71 16 35 H 0.06 1.13 6.56 -51.93 -0.34 0.79 16 36 H 0.04 0.77 6.51 -51.93 -0.34 0.44 16 LS Contribution 267.85 15.07 4.04 4.04 Total: -1.00 -28.74 267.85 -7.35 -36.09 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.74 Total: 0.01 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -0.42 Total: -12.11 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.30 Total: -37.98 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.40 Total: -6.45 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.53 Total: 16.41 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.74 -7.35 -36.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690736232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.967 kcal (2) G-P(sol) polarization free energy of solvation -28.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds