Wall clock time and date at job start Mon Mar 30 2020 03:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47485 * 2 1 4 4 C 1.50702 * 109.46903 * 239.99936 * 2 1 3 5 5 H 1.07993 * 120.00252 * 275.32285 * 4 2 1 6 6 C 1.37877 * 119.99908 * 95.32567 * 4 2 1 7 7 N 1.31513 * 119.99970 * 174.63409 * 6 4 2 8 8 Si 1.86802 * 119.99999 * 354.90970 * 6 4 2 9 9 H 1.48502 * 109.46835 * 94.74109 * 8 6 4 10 10 H 1.48501 * 109.46969 * 214.73576 * 8 6 4 11 11 H 1.48491 * 109.47222 * 334.73668 * 8 6 4 12 12 N 1.46893 * 109.47260 * 119.99920 * 2 1 3 13 13 C 1.45723 * 111.00421 * 176.04331 * 12 2 1 14 14 C 1.52382 * 110.24173 * 177.50066 * 13 12 2 15 15 C 1.52978 * 110.02415 * 61.16401 * 14 13 12 16 16 H 1.09005 * 112.09015 * 71.52607 * 15 14 13 17 17 C 1.55097 * 107.29729 * 195.32718 * 15 14 13 18 18 O 1.43502 * 107.26445 * 92.58242 * 17 15 14 19 19 C 1.43993 * 109.80328 * 359.20319 * 18 17 15 20 20 C 1.53991 * 110.19466 * 305.06287 * 15 14 13 21 21 H 1.09005 * 109.56730 * 166.97818 * 20 15 14 22 22 C 1.44606 * 110.99771 * 47.09774 * 12 2 1 23 23 H 1.09007 * 109.46948 * 54.23412 * 1 2 3 24 24 H 1.08994 * 109.47264 * 174.23351 * 1 2 3 25 25 H 1.08999 * 109.46724 * 294.23869 * 1 2 3 26 26 H 0.97001 * 120.00432 * 180.02562 * 7 6 4 27 27 H 1.09008 * 109.34671 * 297.73614 * 13 12 2 28 28 H 1.08998 * 109.34053 * 57.26461 * 13 12 2 29 29 H 1.09002 * 109.38043 * 181.33407 * 14 13 12 30 30 H 1.08996 * 109.37800 * 300.99909 * 14 13 12 31 31 H 1.09005 * 109.88008 * 211.99451 * 17 15 14 32 32 H 1.08999 * 109.88211 * 333.16242 * 17 15 14 33 33 H 1.08998 * 110.43892 * 143.29865 * 19 18 17 34 34 H 1.09000 * 110.43174 * 265.67610 * 19 18 17 35 35 H 1.08993 * 108.12643 * 293.45768 * 22 12 2 36 36 H 1.08999 * 108.12282 * 49.93608 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1305 -1.7859 -1.2308 6 6 2.3665 0.0127 -2.3558 7 7 2.9036 -0.5940 -3.3917 8 14 2.0636 1.8553 -2.4062 9 1 3.3010 2.5714 -2.0044 10 1 1.6846 2.2571 -3.7846 11 1 0.9647 2.2020 -1.4696 12 7 2.0197 -0.6924 1.1994 13 6 3.4733 -0.7937 1.1871 14 6 3.9663 -1.4589 2.4664 15 6 3.3981 -2.8753 2.5728 16 1 3.8540 -3.5550 1.8528 17 6 3.6007 -3.3446 4.0371 18 8 2.4067 -3.0118 4.7601 19 6 1.4725 -2.3549 3.8831 20 6 1.8620 -2.8410 2.4702 21 1 1.4839 -3.8515 2.3148 22 6 1.3260 -1.9463 1.3933 23 1 -0.3633 0.6007 -0.8339 24 1 -0.3633 -1.0224 -0.1032 25 1 -0.3633 0.4219 0.9371 26 1 3.1392 -0.0852 -4.1833 27 1 3.7868 -1.3869 0.3279 28 1 3.9041 0.2045 1.1101 29 1 5.0552 -1.5061 2.4531 30 1 3.6417 -0.8735 3.3266 31 1 3.7609 -4.4226 4.0621 32 1 4.4556 -2.8304 4.4763 33 1 0.4518 -2.6548 4.1207 34 1 1.5772 -1.2725 3.9574 35 1 0.2839 -1.7252 1.6238 36 1 1.3500 -2.4962 0.4525 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690736232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:52 Heat of formation + Delta-G solvation = -67.293432 kcal Electronic energy + Delta-G solvation = -16705.624272 eV Core-core repulsion = 14188.448482 eV Total energy + Delta-G solvation = -2517.175790 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.43951 -38.74839 -35.36627 -33.94305 -32.67338 -31.20508 -28.65780 -27.34551 -25.74124 -23.59505 -22.98290 -21.53514 -20.04655 -18.79413 -17.63741 -16.88367 -16.51520 -16.26726 -15.78783 -15.28626 -14.86310 -14.70444 -14.58252 -14.16771 -13.82890 -13.54618 -13.36513 -13.03767 -12.72617 -12.52076 -12.29406 -12.04584 -11.84546 -11.71180 -11.66062 -11.35268 -11.12644 -11.08911 -10.72802 -10.40707 -8.75366 -8.31440 -6.34851 1.32596 1.36067 1.47363 2.32919 2.93922 3.01612 3.33090 3.47135 3.75435 3.95432 4.13678 4.32471 4.36377 4.49931 4.58406 4.61381 4.63459 4.83009 4.84531 4.86675 4.91423 4.92889 5.02907 5.05600 5.13135 5.14859 5.19175 5.33877 5.44681 5.50296 5.61704 6.03256 6.21951 6.43367 6.69833 6.74641 7.33095 8.85327 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045247 B = 0.008231 C = 0.007791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.674378 B = 3400.806204 C = 3593.141755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.178 3.822 3 H 0.039 0.961 4 C -0.528 4.528 5 H 0.028 0.972 6 C 0.015 3.985 7 N -0.948 5.948 8 Si 0.936 3.064 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.236 1.236 12 N -0.540 5.540 13 C 0.075 3.925 14 C -0.102 4.102 15 C -0.119 4.119 16 H 0.088 0.912 17 C 0.059 3.941 18 O -0.405 6.405 19 C 0.067 3.933 20 C -0.113 4.113 21 H 0.086 0.914 22 C 0.086 3.914 23 H 0.042 0.958 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.264 0.736 27 H 0.009 0.991 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.942 -1.470 13.533 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.071 3.929 3 H 0.057 0.943 4 C -0.567 4.567 5 H 0.046 0.954 6 C -0.183 4.183 7 N -0.589 5.589 8 Si 0.760 3.240 9 H -0.198 1.198 10 H -0.215 1.215 11 H -0.159 1.159 12 N -0.264 5.264 13 C -0.053 4.053 14 C -0.140 4.140 15 C -0.137 4.137 16 H 0.107 0.893 17 C -0.017 4.017 18 O -0.325 6.325 19 C -0.009 4.009 20 C -0.132 4.132 21 H 0.105 0.895 22 C -0.042 4.042 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.027 0.973 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -1.029 -1.234 13.979 14.071 hybrid contribution 0.355 0.073 -1.976 2.009 sum -0.674 -1.160 12.003 12.078 Atomic orbital electron populations 1.21962 0.96297 1.00660 1.00193 1.19605 0.93237 0.94016 0.86064 0.94292 1.21662 1.42881 0.93776 0.98406 0.95410 1.25883 0.93918 1.03310 0.95190 1.70082 1.43822 1.38500 1.06449 0.85906 0.80077 0.80131 0.77864 1.19846 1.21452 1.15879 1.60200 1.05300 1.21872 1.39015 1.21328 0.88268 0.99437 0.96277 1.21532 1.00477 0.94609 0.97351 1.22575 0.95460 0.97991 0.97708 0.89323 1.23446 0.87966 1.00566 0.89700 1.88424 1.28150 1.79227 1.36652 1.23380 0.93497 0.97278 0.86732 1.21915 0.95860 0.99731 0.95728 0.89546 1.20475 0.98550 0.89580 0.95620 0.93924 0.93638 0.92162 0.92717 0.97316 0.92438 0.90086 0.90919 0.90324 0.90098 0.88565 0.91702 0.90482 0.98114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 8.04 71.98 0.58 -4.70 16 2 C 0.18 8.04 2.04 44.17 0.09 8.14 16 3 H 0.04 1.79 5.58 -2.39 -0.01 1.78 16 4 C -0.53 -29.03 6.98 25.60 0.18 -28.85 16 5 H 0.03 1.74 6.93 -2.91 -0.02 1.72 16 6 C 0.01 0.84 5.47 84.65 0.46 1.31 16 7 N -0.95 -58.54 13.96 21.45 0.30 -58.25 16 8 Si 0.94 43.17 26.62 68.60 1.83 45.00 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.24 -9.90 5.99 99.48 0.60 -9.30 16 12 N -0.54 -21.36 4.58 -891.91 -4.09 -25.44 16 13 C 0.08 2.92 5.10 86.32 0.44 3.36 16 14 C -0.10 -3.00 4.92 30.38 0.15 -2.85 16 15 C -0.12 -3.29 3.60 -9.75 -0.04 -3.32 16 16 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 17 C 0.06 1.40 7.18 72.70 0.52 1.92 16 18 O -0.40 -11.10 11.39 -148.98 -1.70 -12.80 16 19 C 0.07 1.76 6.73 72.46 0.49 2.25 16 20 C -0.11 -3.30 2.98 -10.97 -0.03 -3.34 16 21 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 22 C 0.09 3.09 3.88 85.74 0.33 3.42 16 23 H 0.04 1.70 7.02 -2.38 -0.02 1.68 16 24 H 0.04 1.79 6.85 -2.39 -0.02 1.77 16 25 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 27 H 0.01 0.40 7.02 -2.38 -0.02 0.38 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.07 2.07 7.12 -2.39 -0.02 2.05 16 31 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.08 1.70 7.76 -2.39 -0.02 1.68 16 33 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.06 1.80 7.55 -2.39 -0.02 1.78 16 35 H 0.08 2.55 6.56 -2.39 -0.02 2.54 16 36 H 0.00 0.03 6.51 -2.39 -0.02 0.01 16 Total: -1.00 -63.19 267.85 0.45 -62.74 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.93 Total: 11.42 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 3.17 Total: -22.67 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -3.79 Total: -83.69 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -1.70 Total: -12.80 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.83 Total: 45.00 kcal Total: -63.19 0.45 -62.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690736232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.555 kcal (2) G-P(sol) polarization free energy of solvation -63.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds