Wall clock time and date at job start Mon Mar 30 2020 03:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00136 * 2 1 4 4 C 1.50693 * 109.47347 * 293.95504 * 3 2 1 5 5 H 1.08004 * 120.00146 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00242 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99789 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00091 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47018 * 180.02562 * 8 6 4 10 10 H 1.48508 * 109.47338 * 299.99954 * 8 6 4 11 11 H 1.48493 * 109.47215 * 60.00531 * 8 6 4 12 12 C 1.46901 * 110.99908 * 123.95608 * 2 1 3 13 13 H 1.08999 * 110.80527 * 297.53987 * 12 2 1 14 14 C 1.55003 * 110.90701 * 61.17118 * 12 2 1 15 15 O 1.44412 * 103.47215 * 155.19048 * 14 12 2 16 16 C 1.43752 * 107.00286 * 319.99000 * 15 14 12 17 17 H 1.08998 * 110.00238 * 266.99103 * 16 15 14 18 18 C 1.52999 * 109.88032 * 145.91113 * 16 15 14 19 19 C 1.53004 * 117.49640 * 130.91424 * 18 16 15 20 20 C 1.53003 * 117.49739 * 62.25599 * 18 16 15 21 21 C 1.54099 * 107.29105 * 26.48590 * 16 15 14 22 22 H 1.08999 * 109.47388 * 63.10463 * 1 2 3 23 23 H 1.08994 * 109.47548 * 183.10889 * 1 2 3 24 24 H 1.09007 * 109.47135 * 303.11171 * 1 2 3 25 25 H 1.09006 * 109.47286 * 173.95484 * 3 2 1 26 26 H 1.08997 * 109.47049 * 53.95931 * 3 2 1 27 27 H 0.97004 * 120.00073 * 359.97438 * 7 6 4 28 28 H 1.09002 * 110.61809 * 273.72117 * 14 12 2 29 29 H 1.08999 * 110.61744 * 36.71888 * 14 12 2 30 30 H 1.08994 * 115.54908 * 276.58673 * 18 16 15 31 31 H 1.08990 * 117.49826 * 0.02562 * 19 18 16 32 32 H 1.09000 * 117.49741 * 145.01799 * 19 18 16 33 33 H 1.09002 * 117.49429 * 214.97755 * 20 18 16 34 34 H 1.09000 * 117.49992 * 359.97438 * 20 18 16 35 35 H 1.09002 * 110.48521 * 239.29460 * 21 16 15 36 36 H 1.08997 * 110.48667 * 116.65139 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0268 3.3495 -1.5284 7 7 2.7120 4.0018 -0.6148 8 14 1.5831 4.1868 -3.1381 9 1 2.1152 5.5732 -3.1380 10 1 2.1758 3.4297 -4.2699 11 1 0.1060 4.2231 -3.2864 12 6 1.9954 -0.7660 1.1376 13 1 1.6943 -0.3128 2.0820 14 6 1.5418 -2.2464 1.0649 15 8 2.5568 -2.9466 1.8165 16 6 3.8188 -2.3471 1.4783 17 1 4.2814 -2.8914 0.6549 18 6 4.7447 -2.3615 2.6963 19 6 6.1671 -2.8884 2.4962 20 6 5.1418 -3.7250 3.2657 21 6 3.5359 -0.8935 1.0523 22 1 -0.3634 0.4649 -0.9165 23 1 -0.3634 -1.0261 0.0557 24 1 -0.3634 0.5614 0.8608 25 1 3.0798 1.3444 0.1082 26 1 1.5612 1.9273 0.8310 27 1 2.9428 3.5669 0.2209 28 1 0.5640 -2.3715 1.5301 29 1 1.5232 -2.5919 0.0313 30 1 4.6060 -1.5424 3.4019 31 1 6.4434 -3.2244 1.4968 32 1 6.9642 -2.4162 3.0704 33 1 5.2648 -3.8027 4.3460 34 1 4.7431 -4.6117 2.7729 35 1 3.8770 -0.7219 0.0313 36 1 4.0151 -0.1948 1.7380 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691663052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:59 Heat of formation + Delta-G solvation = -22.175785 kcal Electronic energy + Delta-G solvation = -15879.770145 eV Core-core repulsion = 13364.550803 eV Total energy + Delta-G solvation = -2515.219342 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.66469 -36.99322 -35.80036 -32.81216 -30.73769 -28.61118 -26.78951 -24.71771 -22.79573 -22.44112 -21.92982 -20.50476 -19.64866 -16.84171 -16.30226 -16.12294 -15.30047 -14.80485 -14.11345 -13.91549 -13.66779 -13.56322 -12.96282 -12.58523 -11.96160 -11.86147 -11.58964 -11.40341 -11.19230 -11.07882 -10.87214 -10.70107 -10.55823 -10.34600 -10.18501 -10.05058 -9.92323 -9.48316 -8.68840 -8.39396 -7.43136 -6.39084 -4.08014 3.43279 3.45519 3.57567 3.64082 4.22166 4.49572 4.57049 4.76083 4.85619 4.95913 5.03067 5.24809 5.36452 5.41376 5.49604 5.59052 5.61031 5.68467 5.86310 5.94532 5.97737 6.06787 6.07786 6.18846 6.26926 6.31871 6.40867 6.62141 6.96231 7.03002 7.09352 7.74392 7.90964 8.28410 8.55019 8.84277 9.62688 11.00068 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038992 B = 0.006154 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.930105 B = 4548.427409 C = 5032.898698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.524 5.524 3 C 0.181 3.819 4 C -0.589 4.589 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.914 5.914 8 Si 1.073 2.927 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.288 1.288 12 C 0.049 3.951 13 H 0.044 0.956 14 C 0.056 3.944 15 O -0.375 6.375 16 C 0.110 3.890 17 H 0.067 0.933 18 C -0.153 4.153 19 C -0.175 4.175 20 C -0.170 4.170 21 C -0.137 4.137 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.013 0.987 25 H 0.024 0.976 26 H -0.021 1.021 27 H 0.266 0.734 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.048 -12.438 5.164 13.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.249 5.249 3 C 0.056 3.944 4 C -0.627 4.627 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.550 5.550 8 Si 0.901 3.099 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.215 1.215 12 C -0.060 4.060 13 H 0.062 0.938 14 C -0.021 4.021 15 O -0.294 6.294 16 C 0.052 3.948 17 H 0.085 0.915 18 C -0.171 4.171 19 C -0.212 4.212 20 C -0.207 4.207 21 C -0.175 4.175 22 H 0.094 0.906 23 H 0.066 0.934 24 H 0.032 0.968 25 H 0.042 0.958 26 H -0.003 1.003 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.327 -11.420 4.038 12.334 hybrid contribution -0.418 -0.768 1.546 1.777 sum 1.909 -12.189 5.584 13.542 Atomic orbital electron populations 1.22230 0.88417 0.99135 1.01359 1.62170 1.07141 1.17304 1.38322 1.19880 0.95018 0.82590 0.96927 1.21962 1.38928 0.99715 1.02143 0.92473 1.25857 0.94420 0.94690 1.03976 1.70802 1.36517 1.39903 1.07814 0.83488 0.76052 0.76091 0.74312 1.20832 1.21356 1.21477 1.23125 0.94652 0.94463 0.93791 0.93812 1.23574 0.91492 0.90481 0.96557 1.88835 1.15769 1.57645 1.67164 1.22219 0.84963 0.93409 0.94186 0.91524 1.22445 0.96058 0.98396 1.00205 1.22983 0.91993 1.04161 1.02057 1.22835 1.03116 0.95019 0.99719 1.22954 0.95781 0.95273 1.03466 0.90551 0.93421 0.96827 0.95766 1.00312 0.92377 0.89635 0.91241 0.87538 0.88669 0.88616 0.88996 0.88619 0.89182 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.19 60.06 0.55 1.27 16 2 N -0.52 -11.31 4.60 -233.92 -1.07 -12.39 16 3 C 0.18 4.68 3.89 -4.98 -0.02 4.66 16 4 C -0.59 -16.64 8.56 -34.44 -0.29 -16.94 16 5 H 0.06 1.61 7.10 -52.48 -0.37 1.24 16 6 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 7 N -0.91 -27.81 13.65 55.43 0.76 -27.06 16 8 Si 1.07 25.21 29.90 -169.99 -5.08 20.13 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.05 0.91 2.80 -65.70 -0.18 0.72 16 13 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 14 C 0.06 0.89 6.10 38.22 0.23 1.12 16 15 O -0.38 -6.07 11.14 -35.23 -0.39 -6.46 16 16 C 0.11 1.64 3.61 -26.16 -0.09 1.55 16 17 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 18 C -0.15 -1.99 5.27 -90.62 -0.48 -2.47 16 19 C -0.17 -1.90 10.19 -26.69 -0.27 -2.17 16 20 C -0.17 -1.91 10.21 -26.69 -0.27 -2.18 16 21 C -0.14 -2.35 5.07 -25.20 -0.13 -2.48 16 22 H 0.08 1.58 6.95 -51.93 -0.36 1.22 16 23 H 0.05 0.77 6.79 -51.93 -0.35 0.42 16 24 H 0.01 0.26 8.11 -51.93 -0.42 -0.16 16 25 H 0.02 0.65 6.64 -51.93 -0.34 0.31 16 26 H -0.02 -0.57 7.96 -51.93 -0.41 -0.99 16 27 H 0.27 8.08 7.22 -40.82 -0.29 7.79 16 28 H 0.09 1.22 7.86 -51.93 -0.41 0.82 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.11 1.40 7.91 -51.93 -0.41 0.99 16 31 H 0.09 0.99 8.07 -51.93 -0.42 0.57 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.68 7.80 -51.93 -0.40 1.28 16 36 H 0.07 1.25 7.55 -51.93 -0.39 0.85 16 LS Contribution 289.54 15.07 4.36 4.36 Total: -1.00 -30.37 289.54 -8.40 -38.77 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.92 Total: -0.76 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -1.05 Total: -16.59 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: -0.32 Total: -39.45 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.39 Total: -6.46 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.37 -8.40 -38.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691663052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.592 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds