Wall clock time and date at job start Mon Mar 30 2020 03:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00136 * 2 1 4 4 C 1.50693 * 109.47347 * 293.95504 * 3 2 1 5 5 H 1.08004 * 120.00146 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00242 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99789 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00091 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47018 * 180.02562 * 8 6 4 10 10 H 1.48508 * 109.47338 * 299.99954 * 8 6 4 11 11 H 1.48493 * 109.47215 * 60.00531 * 8 6 4 12 12 C 1.46901 * 110.99908 * 123.95608 * 2 1 3 13 13 H 1.08999 * 110.80527 * 297.53987 * 12 2 1 14 14 C 1.55003 * 110.90701 * 61.17118 * 12 2 1 15 15 O 1.44412 * 103.47215 * 155.19048 * 14 12 2 16 16 C 1.43752 * 107.00286 * 319.99000 * 15 14 12 17 17 H 1.08998 * 110.00238 * 266.99103 * 16 15 14 18 18 C 1.52999 * 109.88032 * 145.91113 * 16 15 14 19 19 C 1.53004 * 117.49640 * 130.91424 * 18 16 15 20 20 C 1.53003 * 117.49739 * 62.25599 * 18 16 15 21 21 C 1.54099 * 107.29105 * 26.48590 * 16 15 14 22 22 H 1.08999 * 109.47388 * 63.10463 * 1 2 3 23 23 H 1.08994 * 109.47548 * 183.10889 * 1 2 3 24 24 H 1.09007 * 109.47135 * 303.11171 * 1 2 3 25 25 H 1.09006 * 109.47286 * 173.95484 * 3 2 1 26 26 H 1.08997 * 109.47049 * 53.95931 * 3 2 1 27 27 H 0.97004 * 120.00073 * 359.97438 * 7 6 4 28 28 H 1.09002 * 110.61809 * 273.72117 * 14 12 2 29 29 H 1.08999 * 110.61744 * 36.71888 * 14 12 2 30 30 H 1.08994 * 115.54908 * 276.58673 * 18 16 15 31 31 H 1.08990 * 117.49826 * 0.02562 * 19 18 16 32 32 H 1.09000 * 117.49741 * 145.01799 * 19 18 16 33 33 H 1.09002 * 117.49429 * 214.97755 * 20 18 16 34 34 H 1.09000 * 117.49992 * 359.97438 * 20 18 16 35 35 H 1.09002 * 110.48521 * 239.29460 * 21 16 15 36 36 H 1.08997 * 110.48667 * 116.65139 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0268 3.3495 -1.5284 7 7 2.7120 4.0018 -0.6148 8 14 1.5831 4.1868 -3.1381 9 1 2.1152 5.5732 -3.1380 10 1 2.1758 3.4297 -4.2699 11 1 0.1060 4.2231 -3.2864 12 6 1.9954 -0.7660 1.1376 13 1 1.6943 -0.3128 2.0820 14 6 1.5418 -2.2464 1.0649 15 8 2.5568 -2.9466 1.8165 16 6 3.8188 -2.3471 1.4783 17 1 4.2814 -2.8914 0.6549 18 6 4.7447 -2.3615 2.6963 19 6 6.1671 -2.8884 2.4962 20 6 5.1418 -3.7250 3.2657 21 6 3.5359 -0.8935 1.0523 22 1 -0.3634 0.4649 -0.9165 23 1 -0.3634 -1.0261 0.0557 24 1 -0.3634 0.5614 0.8608 25 1 3.0798 1.3444 0.1082 26 1 1.5612 1.9273 0.8310 27 1 2.9428 3.5669 0.2209 28 1 0.5640 -2.3715 1.5301 29 1 1.5232 -2.5919 0.0313 30 1 4.6060 -1.5424 3.4019 31 1 6.4434 -3.2244 1.4968 32 1 6.9642 -2.4162 3.0704 33 1 5.2648 -3.8027 4.3460 34 1 4.7431 -4.6117 2.7729 35 1 3.8770 -0.7219 0.0313 36 1 4.0151 -0.1948 1.7380 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691663052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:59 Heat of formation + Delta-G solvation = -41.836628 kcal Electronic energy + Delta-G solvation = -15880.622703 eV Core-core repulsion = 13364.550803 eV Total energy + Delta-G solvation = -2516.071900 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.98140 -38.31938 -37.17874 -34.92014 -32.16301 -30.12870 -28.54418 -26.58279 -24.04866 -23.94048 -23.20889 -21.67410 -21.17014 -18.92397 -17.72518 -17.43077 -16.50838 -16.18614 -15.76556 -15.49714 -15.30265 -14.98122 -14.52349 -14.19463 -13.70303 -13.32952 -13.18865 -12.80785 -12.63420 -12.42021 -12.40485 -12.31664 -11.98834 -11.96131 -11.82846 -11.24437 -10.98313 -10.84905 -10.67647 -10.58219 -9.23988 -8.69732 -6.40285 1.53667 1.62016 1.81465 2.48321 2.56166 3.03409 3.13999 3.25277 3.46540 3.53197 3.84752 4.02602 4.06476 4.09579 4.22211 4.38194 4.41433 4.47582 4.56388 4.67513 4.76137 4.76931 4.83882 4.90934 4.94294 4.97826 5.02110 5.09702 5.21542 5.25298 5.70249 5.83800 5.93764 6.31016 6.38361 6.59382 7.40312 8.69327 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038992 B = 0.006154 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.930105 B = 4548.427409 C = 5032.898698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.530 5.530 3 C 0.194 3.806 4 C -0.600 4.600 5 H 0.057 0.943 6 C -0.037 4.037 7 N -0.938 5.938 8 Si 1.121 2.879 9 H -0.284 1.284 10 H -0.269 1.269 11 H -0.268 1.268 12 C 0.043 3.957 13 H 0.035 0.965 14 C 0.066 3.934 15 O -0.380 6.380 16 C 0.117 3.883 17 H 0.075 0.925 18 C -0.177 4.177 19 C -0.163 4.163 20 C -0.160 4.160 21 C -0.135 4.135 22 H 0.060 0.940 23 H 0.087 0.913 24 H 0.008 0.992 25 H 0.008 0.992 26 H -0.048 1.048 27 H 0.252 0.748 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 -13.918 4.717 14.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.638 4.638 5 H 0.075 0.925 6 C -0.234 4.234 7 N -0.576 5.576 8 Si 0.942 3.058 9 H -0.210 1.210 10 H -0.195 1.195 11 H -0.194 1.194 12 C -0.066 4.066 13 H 0.053 0.947 14 C -0.011 4.011 15 O -0.299 6.299 16 C 0.059 3.941 17 H 0.093 0.907 18 C -0.195 4.195 19 C -0.200 4.200 20 C -0.197 4.197 21 C -0.173 4.173 22 H 0.079 0.921 23 H 0.105 0.895 24 H 0.027 0.973 25 H 0.026 0.974 26 H -0.031 1.031 27 H 0.061 0.939 28 H 0.125 0.875 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.098 -12.941 3.608 13.597 hybrid contribution -0.343 -0.357 1.735 1.804 sum 1.755 -13.297 5.343 14.438 Atomic orbital electron populations 1.22271 0.87014 1.01418 1.00326 1.62090 1.08497 1.14752 1.40128 1.19573 0.93918 0.84735 0.95053 1.22292 1.38513 1.00130 1.02860 0.92501 1.27425 0.93564 0.95845 1.06567 1.70935 1.38348 1.40255 1.08024 0.82877 0.77044 0.75079 0.70780 1.20989 1.19454 1.19361 1.23233 0.95472 0.95755 0.92149 0.94676 1.23537 0.92368 0.88011 0.97152 1.88836 1.16154 1.57590 1.67272 1.22202 0.84973 0.91433 0.95484 0.90696 1.22389 0.97494 0.99731 0.99935 1.23099 0.91187 1.03114 1.02612 1.22913 1.02392 0.93762 1.00657 1.22903 0.95053 0.97155 1.02181 0.92069 0.89463 0.97313 0.97431 1.03091 0.93864 0.87495 0.90881 0.88171 0.88084 0.87205 0.87582 0.88583 0.91134 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.44 9.19 127.69 1.17 2.61 16 2 N -0.53 -22.94 4.60 -893.98 -4.11 -27.05 16 3 C 0.19 10.32 3.89 85.56 0.33 10.65 16 4 C -0.60 -34.32 8.56 25.60 0.22 -34.11 16 5 H 0.06 3.20 7.10 -2.91 -0.02 3.18 16 6 C -0.04 -2.13 5.46 84.66 0.46 -1.67 16 7 N -0.94 -58.30 13.65 21.45 0.29 -58.01 16 8 Si 1.12 50.23 29.90 68.60 2.05 52.28 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 11 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 12 C 0.04 1.58 2.80 46.22 0.13 1.71 16 13 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 14 C 0.07 1.97 6.10 72.67 0.44 2.42 16 15 O -0.38 -11.57 11.14 -148.98 -1.66 -13.23 16 16 C 0.12 3.37 3.61 30.97 0.11 3.48 16 17 H 0.08 2.04 7.93 -2.39 -0.02 2.02 16 18 C -0.18 -4.39 5.27 -10.79 -0.06 -4.45 16 19 C -0.16 -3.19 10.19 30.62 0.31 -2.88 16 20 C -0.16 -3.23 10.21 30.62 0.31 -2.91 16 21 C -0.13 -4.69 5.07 31.58 0.16 -4.53 16 22 H 0.06 2.50 6.95 -2.39 -0.02 2.49 16 23 H 0.09 2.61 6.79 -2.39 -0.02 2.60 16 24 H 0.01 0.33 8.11 -2.38 -0.02 0.31 16 25 H 0.01 0.43 6.64 -2.38 -0.02 0.41 16 26 H -0.05 -2.80 7.96 -2.39 -0.02 -2.82 16 27 H 0.25 15.94 7.22 -92.70 -0.67 15.27 16 28 H 0.11 2.74 7.86 -2.39 -0.02 2.72 16 29 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.10 2.59 7.91 -2.39 -0.02 2.57 16 31 H 0.10 1.86 8.07 -2.39 -0.02 1.84 16 32 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 2.71 7.80 -2.39 -0.02 2.69 16 36 H 0.07 2.37 7.55 -2.39 -0.02 2.35 16 Total: -1.00 -65.30 289.54 1.31 -63.99 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 1.13 Total: 11.70 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 3.60 Total: -29.68 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -3.82 Total: -85.06 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -1.66 Total: -13.23 kcal Atomic # 14 Polarization: 50.23 SS G_CDS: 2.05 Total: 52.28 kcal Total: -65.30 1.31 -63.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691663052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.153 kcal (2) G-P(sol) polarization free energy of solvation -65.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds