Wall clock time and date at job start Mon Mar 30 2020 03:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 110.99681 * 2 1 4 4 C 1.50699 * 109.46963 * 66.05037 * 3 2 1 5 5 H 1.07999 * 119.99946 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99896 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99641 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00040 * 179.97438 * 6 4 3 9 9 H 1.48493 * 109.47014 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47098 * 300.00479 * 8 6 4 11 11 H 1.48505 * 109.46782 * 60.00176 * 8 6 4 12 12 C 1.46898 * 110.99981 * 236.04815 * 2 1 3 13 13 H 1.09004 * 110.45815 * 64.86687 * 12 2 1 14 14 C 1.54481 * 110.51176 * 302.11216 * 12 2 1 15 15 O 1.44427 * 104.80115 * 217.37375 * 14 12 2 16 16 C 1.44423 * 105.27461 * 40.51367 * 15 14 12 17 17 H 1.08998 * 110.37705 * 78.31911 * 16 15 14 18 18 C 1.53007 * 110.37409 * 200.65599 * 16 15 14 19 19 C 1.52999 * 117.49294 * 4.12294 * 18 16 15 20 20 C 1.53002 * 117.49283 * 295.46653 * 18 16 15 21 21 C 1.54477 * 104.80477 * 319.48259 * 16 15 14 22 22 H 1.08996 * 109.47659 * 56.67301 * 1 2 3 23 23 H 1.09000 * 109.46952 * 176.67241 * 1 2 3 24 24 H 1.09003 * 109.47189 * 296.67049 * 1 2 3 25 25 H 1.09000 * 109.47019 * 306.04379 * 3 2 1 26 26 H 1.09009 * 109.46701 * 186.04933 * 3 2 1 27 27 H 0.96998 * 120.00470 * 359.97438 * 7 6 4 28 28 H 1.08994 * 110.37026 * 336.20588 * 14 12 2 29 29 H 1.08999 * 110.37382 * 98.54724 * 14 12 2 30 30 H 1.08993 * 115.55360 * 149.79641 * 18 16 15 31 31 H 1.08998 * 117.50146 * 0.02562 * 19 18 16 32 32 H 1.09003 * 117.49615 * 145.02548 * 19 18 16 33 33 H 1.09003 * 117.49644 * 214.97222 * 20 18 16 34 34 H 1.08991 * 117.50200 * 359.97438 * 20 18 16 35 35 H 1.08993 * 110.51536 * 265.33907 * 21 16 15 36 36 H 1.08997 * 110.51487 * 142.62271 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0276 3.3491 1.5290 7 7 2.7135 4.0012 0.6158 8 14 1.5826 4.1868 3.1382 9 1 2.1159 5.5727 3.1387 10 1 0.1054 4.2242 3.2849 11 1 2.1735 3.4292 4.2705 12 6 1.9954 -0.7659 -1.1376 13 1 1.7270 -0.2844 -2.0780 14 6 1.4713 -2.2187 -1.1010 15 8 2.5818 -3.0230 -1.5545 16 6 3.7500 -2.4432 -0.9341 17 1 3.8205 -2.7548 0.1080 18 6 5.0136 -2.8449 -1.6978 19 6 4.8348 -3.6631 -2.9783 20 6 5.3868 -4.3286 -1.7151 21 6 3.5290 -0.9171 -1.0253 22 1 -0.3634 0.5646 -0.8586 23 1 -0.3633 -1.0259 -0.0597 24 1 -0.3634 0.4613 0.9183 25 1 1.5610 1.9274 -0.8309 26 1 3.0797 1.3444 -0.1083 27 1 2.9449 3.5661 -0.2197 28 1 1.1922 -2.4958 -0.0845 29 1 0.6210 -2.3324 -1.7733 30 1 5.8282 -2.1213 -1.6725 31 1 3.8172 -3.9148 -3.2768 32 1 5.5323 -3.4780 -3.7953 33 1 6.4471 -4.5810 -1.7016 34 1 4.7326 -5.0184 -1.1821 35 1 4.0185 -0.5125 -1.9112 36 1 3.8965 -0.4234 -0.1257 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691663054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:03 Heat of formation + Delta-G solvation = -20.277699 kcal Electronic energy + Delta-G solvation = -15951.216359 eV Core-core repulsion = 13436.079324 eV Total energy + Delta-G solvation = -2515.137035 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.70358 -36.95586 -35.63514 -32.81030 -30.74293 -28.58758 -26.79882 -24.75196 -23.07296 -22.27283 -21.96106 -20.16863 -19.62744 -16.80548 -16.23406 -16.09573 -15.35787 -14.88933 -14.20444 -13.94959 -13.65693 -13.39012 -13.09643 -12.45806 -11.89470 -11.79241 -11.42478 -11.34963 -11.21180 -11.04446 -10.89776 -10.74380 -10.59477 -10.26713 -10.11948 -10.03763 -9.98512 -9.44653 -8.68791 -8.39337 -7.41904 -6.39117 -4.08093 3.43227 3.45443 3.64025 3.79393 4.05786 4.49936 4.62216 4.79043 4.92559 5.00913 5.06561 5.27561 5.36982 5.43238 5.57990 5.65724 5.69139 5.70416 5.91994 5.96300 5.99631 6.11674 6.14753 6.21609 6.27786 6.31660 6.42473 6.61819 6.95607 7.00819 7.06011 7.75666 7.91227 8.28478 8.55114 8.84223 9.62587 11.00025 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042134 B = 0.006095 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.391107 B = 4592.686910 C = 4937.899379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.525 5.525 3 C 0.181 3.819 4 C -0.589 4.589 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.914 5.914 8 Si 1.072 2.928 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.287 1.287 12 C 0.049 3.951 13 H 0.042 0.958 14 C 0.055 3.945 15 O -0.376 6.376 16 C 0.109 3.891 17 H 0.073 0.927 18 C -0.153 4.153 19 C -0.166 4.166 20 C -0.178 4.178 21 C -0.138 4.138 22 H 0.013 0.987 23 H 0.047 0.953 24 H 0.075 0.925 25 H -0.021 1.021 26 H 0.025 0.975 27 H 0.266 0.734 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 -12.974 -4.476 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.251 5.251 3 C 0.055 3.945 4 C -0.627 4.627 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.550 5.550 8 Si 0.901 3.099 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.214 1.214 12 C -0.060 4.060 13 H 0.060 0.940 14 C -0.022 4.022 15 O -0.295 6.295 16 C 0.051 3.949 17 H 0.091 0.909 18 C -0.171 4.171 19 C -0.203 4.203 20 C -0.215 4.215 21 C -0.175 4.175 22 H 0.032 0.968 23 H 0.066 0.934 24 H 0.094 0.906 25 H -0.003 1.003 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.832 -11.967 -3.350 12.562 hybrid contribution -0.437 -0.760 -1.529 1.763 sum 1.395 -12.727 -4.879 13.701 Atomic orbital electron populations 1.22230 0.88511 0.99105 1.01366 1.62223 1.07088 1.17269 1.38509 1.19896 0.95053 0.82605 0.96930 1.21960 1.38880 0.99739 1.02145 0.92488 1.25856 0.94425 0.94696 1.03968 1.70799 1.36493 1.39901 1.07843 0.83488 0.76049 0.76093 0.74319 1.20832 1.21484 1.21357 1.22930 0.94838 0.94530 0.93735 0.94049 1.23453 0.89531 0.89270 0.99956 1.89023 1.16087 1.53831 1.70552 1.22390 0.84728 0.92232 0.95537 0.90891 1.22383 0.98488 0.94512 1.01745 1.22853 1.02792 1.03651 0.91037 1.22942 1.01111 0.95179 1.02299 1.22971 0.95619 0.95418 1.03537 0.96847 0.93410 0.90582 1.00308 0.95736 0.92369 0.91264 0.89859 0.86866 0.87788 0.89341 0.89100 0.88777 0.91175 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.13 60.06 0.55 1.25 16 2 N -0.53 -11.31 4.53 -234.43 -1.06 -12.37 16 3 C 0.18 4.65 3.82 -4.97 -0.02 4.63 16 4 C -0.59 -16.61 8.56 -34.44 -0.29 -16.90 16 5 H 0.06 1.61 7.10 -52.49 -0.37 1.23 16 6 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 7 N -0.91 -27.78 13.65 55.43 0.76 -27.03 16 8 Si 1.07 25.20 29.90 -169.99 -5.08 20.11 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.05 0.90 2.84 -66.14 -0.19 0.71 16 13 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 14 C 0.05 0.86 5.92 37.93 0.22 1.09 16 15 O -0.38 -5.95 9.78 -35.23 -0.34 -6.29 16 16 C 0.11 1.64 3.64 -25.95 -0.09 1.55 16 17 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 18 C -0.15 -1.98 5.60 -90.62 -0.51 -2.48 16 19 C -0.17 -1.98 9.89 -26.69 -0.26 -2.25 16 20 C -0.18 -2.01 10.25 -26.69 -0.27 -2.28 16 21 C -0.14 -2.36 5.64 -25.16 -0.14 -2.50 16 22 H 0.01 0.26 8.11 -51.93 -0.42 -0.16 16 23 H 0.05 0.77 6.59 -51.93 -0.34 0.43 16 24 H 0.08 1.58 6.95 -51.93 -0.36 1.22 16 25 H -0.02 -0.57 7.96 -51.93 -0.41 -0.98 16 26 H 0.02 0.66 6.25 -51.92 -0.32 0.33 16 27 H 0.27 8.08 7.22 -40.82 -0.29 7.78 16 28 H 0.07 1.10 7.65 -51.93 -0.40 0.71 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.11 1.37 8.13 -51.93 -0.42 0.95 16 31 H 0.10 1.35 7.07 -51.93 -0.37 0.99 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.15 7.87 -51.93 -0.41 0.74 16 36 H 0.09 1.79 6.81 -51.93 -0.35 1.43 16 LS Contribution 286.48 15.07 4.32 4.32 Total: -1.00 -30.12 286.48 -8.33 -38.46 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.81 Total: -0.32 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -1.11 Total: -16.88 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: -0.31 Total: -39.40 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.34 Total: -6.29 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.12 -8.33 -38.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691663054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.178 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds