Wall clock time and date at job start Mon Mar 30 2020 03:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 110.99681 * 2 1 4 4 C 1.50699 * 109.46963 * 66.05037 * 3 2 1 5 5 H 1.07999 * 119.99946 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99896 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99641 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00040 * 179.97438 * 6 4 3 9 9 H 1.48493 * 109.47014 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47098 * 300.00479 * 8 6 4 11 11 H 1.48505 * 109.46782 * 60.00176 * 8 6 4 12 12 C 1.46898 * 110.99981 * 236.04815 * 2 1 3 13 13 H 1.09004 * 110.45815 * 64.86687 * 12 2 1 14 14 C 1.54481 * 110.51176 * 302.11216 * 12 2 1 15 15 O 1.44427 * 104.80115 * 217.37375 * 14 12 2 16 16 C 1.44423 * 105.27461 * 40.51367 * 15 14 12 17 17 H 1.08998 * 110.37705 * 78.31911 * 16 15 14 18 18 C 1.53007 * 110.37409 * 200.65599 * 16 15 14 19 19 C 1.52999 * 117.49294 * 4.12294 * 18 16 15 20 20 C 1.53002 * 117.49283 * 295.46653 * 18 16 15 21 21 C 1.54477 * 104.80477 * 319.48259 * 16 15 14 22 22 H 1.08996 * 109.47659 * 56.67301 * 1 2 3 23 23 H 1.09000 * 109.46952 * 176.67241 * 1 2 3 24 24 H 1.09003 * 109.47189 * 296.67049 * 1 2 3 25 25 H 1.09000 * 109.47019 * 306.04379 * 3 2 1 26 26 H 1.09009 * 109.46701 * 186.04933 * 3 2 1 27 27 H 0.96998 * 120.00470 * 359.97438 * 7 6 4 28 28 H 1.08994 * 110.37026 * 336.20588 * 14 12 2 29 29 H 1.08999 * 110.37382 * 98.54724 * 14 12 2 30 30 H 1.08993 * 115.55360 * 149.79641 * 18 16 15 31 31 H 1.08998 * 117.50146 * 0.02562 * 19 18 16 32 32 H 1.09003 * 117.49615 * 145.02548 * 19 18 16 33 33 H 1.09003 * 117.49644 * 214.97222 * 20 18 16 34 34 H 1.08991 * 117.50200 * 359.97438 * 20 18 16 35 35 H 1.08993 * 110.51536 * 265.33907 * 21 16 15 36 36 H 1.08997 * 110.51487 * 142.62271 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0276 3.3491 1.5290 7 7 2.7135 4.0012 0.6158 8 14 1.5826 4.1868 3.1382 9 1 2.1159 5.5727 3.1387 10 1 0.1054 4.2242 3.2849 11 1 2.1735 3.4292 4.2705 12 6 1.9954 -0.7659 -1.1376 13 1 1.7270 -0.2844 -2.0780 14 6 1.4713 -2.2187 -1.1010 15 8 2.5818 -3.0230 -1.5545 16 6 3.7500 -2.4432 -0.9341 17 1 3.8205 -2.7548 0.1080 18 6 5.0136 -2.8449 -1.6978 19 6 4.8348 -3.6631 -2.9783 20 6 5.3868 -4.3286 -1.7151 21 6 3.5290 -0.9171 -1.0253 22 1 -0.3634 0.5646 -0.8586 23 1 -0.3633 -1.0259 -0.0597 24 1 -0.3634 0.4613 0.9183 25 1 1.5610 1.9274 -0.8309 26 1 3.0797 1.3444 -0.1083 27 1 2.9449 3.5661 -0.2197 28 1 1.1922 -2.4958 -0.0845 29 1 0.6210 -2.3324 -1.7733 30 1 5.8282 -2.1213 -1.6725 31 1 3.8172 -3.9148 -3.2768 32 1 5.5323 -3.4780 -3.7953 33 1 6.4471 -4.5810 -1.7016 34 1 4.7326 -5.0184 -1.1821 35 1 4.0185 -0.5125 -1.9112 36 1 3.8965 -0.4234 -0.1257 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691663054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:02 Heat of formation + Delta-G solvation = -39.553821 kcal Electronic energy + Delta-G solvation = -15952.052235 eV Core-core repulsion = 13436.079324 eV Total energy + Delta-G solvation = -2515.972911 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.02287 -38.33610 -36.97722 -34.91000 -32.16555 -30.12815 -28.52224 -26.60880 -24.36329 -23.86051 -23.17950 -21.29242 -21.19205 -18.91721 -17.64289 -17.39668 -16.63284 -16.24860 -15.66916 -15.54545 -15.46873 -14.82289 -14.52836 -14.14108 -13.72003 -13.29244 -13.15117 -12.69180 -12.61748 -12.41603 -12.37595 -12.25056 -11.99796 -11.96558 -11.83490 -11.22189 -11.08924 -10.77741 -10.63663 -10.57586 -9.21825 -8.69509 -6.40069 1.53548 1.61854 1.81354 2.54760 2.72921 2.88635 3.12437 3.18599 3.45702 3.68072 3.91166 4.01726 4.09932 4.11926 4.25741 4.38930 4.45667 4.54974 4.58893 4.68863 4.74922 4.81470 4.87021 4.91304 4.94745 4.95985 5.02258 5.10079 5.23699 5.34675 5.67294 5.82146 5.94670 6.31677 6.39333 6.60131 7.40401 8.69517 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042134 B = 0.006095 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.391107 B = 4592.686910 C = 4937.899379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.532 5.532 3 C 0.193 3.807 4 C -0.599 4.599 5 H 0.056 0.944 6 C -0.037 4.037 7 N -0.938 5.938 8 Si 1.121 2.879 9 H -0.284 1.284 10 H -0.269 1.269 11 H -0.270 1.270 12 C 0.043 3.957 13 H 0.034 0.966 14 C 0.064 3.936 15 O -0.376 6.376 16 C 0.115 3.885 17 H 0.071 0.929 18 C -0.170 4.170 19 C -0.165 4.165 20 C -0.164 4.164 21 C -0.136 4.136 22 H 0.009 0.991 23 H 0.087 0.913 24 H 0.059 0.941 25 H -0.048 1.048 26 H 0.008 0.992 27 H 0.252 0.748 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.280 -14.490 -4.069 15.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.257 5.257 3 C 0.066 3.934 4 C -0.638 4.638 5 H 0.074 0.926 6 C -0.234 4.234 7 N -0.576 5.576 8 Si 0.942 3.058 9 H -0.210 1.210 10 H -0.194 1.194 11 H -0.195 1.195 12 C -0.066 4.066 13 H 0.052 0.948 14 C -0.013 4.013 15 O -0.295 6.295 16 C 0.057 3.943 17 H 0.089 0.911 18 C -0.188 4.188 19 C -0.202 4.202 20 C -0.201 4.201 21 C -0.174 4.174 22 H 0.027 0.973 23 H 0.105 0.895 24 H 0.078 0.922 25 H -0.031 1.031 26 H 0.026 0.974 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.137 0.863 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.570 -13.524 -2.959 13.932 hybrid contribution -0.361 -0.340 -1.706 1.776 sum 1.210 -13.863 -4.664 14.677 Atomic orbital electron populations 1.22266 0.87119 1.01366 1.00324 1.62143 1.08431 1.14729 1.40362 1.19591 0.93986 0.84743 0.95039 1.22287 1.38448 1.00147 1.02872 0.92575 1.27416 0.93582 0.95851 1.06550 1.70931 1.38322 1.40248 1.08056 0.82878 0.77027 0.75087 0.70803 1.20976 1.19384 1.19483 1.23056 0.95647 0.95759 0.92120 0.94783 1.23423 0.90093 0.86946 1.00838 1.89035 1.16220 1.53613 1.70589 1.22342 0.85619 0.90345 0.95973 0.91121 1.22371 0.97690 0.95996 1.02787 1.22899 1.02729 1.03136 0.91416 1.23022 1.02315 0.93508 1.01220 1.22921 0.94960 0.97169 1.02352 0.97276 0.89489 0.92168 1.03063 0.97356 0.93848 0.91020 0.87523 0.86291 0.88906 0.87688 0.87016 0.88960 0.90922 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 9.13 127.69 1.17 2.58 16 2 N -0.53 -22.96 4.53 -895.61 -4.06 -27.02 16 3 C 0.19 10.25 3.82 85.56 0.33 10.58 16 4 C -0.60 -34.29 8.56 25.60 0.22 -34.07 16 5 H 0.06 3.16 7.10 -2.91 -0.02 3.14 16 6 C -0.04 -2.13 5.46 84.66 0.46 -1.66 16 7 N -0.94 -58.24 13.65 21.45 0.29 -57.95 16 8 Si 1.12 50.26 29.90 68.60 2.05 52.31 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 12 C 0.04 1.57 2.84 45.93 0.13 1.70 16 13 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 14 C 0.06 1.88 5.92 72.49 0.43 2.31 16 15 O -0.38 -11.18 9.78 -148.98 -1.46 -12.64 16 16 C 0.11 3.35 3.64 31.10 0.11 3.46 16 17 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 18 C -0.17 -4.13 5.60 -10.79 -0.06 -4.19 16 19 C -0.16 -3.57 9.89 30.62 0.30 -3.27 16 20 C -0.16 -3.28 10.25 30.62 0.31 -2.96 16 21 C -0.14 -4.71 5.64 31.61 0.18 -4.53 16 22 H 0.01 0.34 8.11 -2.39 -0.02 0.32 16 23 H 0.09 2.60 6.59 -2.39 -0.02 2.59 16 24 H 0.06 2.46 6.95 -2.39 -0.02 2.45 16 25 H -0.05 -2.78 7.96 -2.39 -0.02 -2.79 16 26 H 0.01 0.47 6.25 -2.38 -0.01 0.46 16 27 H 0.25 15.93 7.22 -92.71 -0.67 15.26 16 28 H 0.07 2.10 7.65 -2.39 -0.02 2.09 16 29 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.12 2.73 8.13 -2.39 -0.02 2.71 16 31 H 0.09 2.24 7.07 -2.39 -0.02 2.22 16 32 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 2.43 7.87 -2.39 -0.02 2.41 16 36 H 0.07 2.68 6.81 -2.39 -0.02 2.67 16 Total: -1.00 -64.87 286.48 1.55 -63.32 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.14 Total: 12.02 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 3.58 Total: -30.05 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -3.77 Total: -84.97 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -1.46 Total: -12.64 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 2.05 Total: 52.31 kcal Total: -64.87 1.55 -63.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691663054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.770 kcal (2) G-P(sol) polarization free energy of solvation -64.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds