Wall clock time and date at job start Mon Mar 30 2020 02:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47042 * 2 1 4 4 C 1.52997 * 109.47335 * 120.00116 * 2 1 3 5 5 C 1.50692 * 109.47326 * 185.00265 * 4 2 1 6 6 H 1.08003 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00264 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00299 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47249 * 90.00104 * 9 7 5 11 11 H 1.48499 * 109.47005 * 209.99970 * 9 7 5 12 12 H 1.48497 * 109.47384 * 330.00046 * 9 7 5 13 13 N 1.46900 * 109.47112 * 240.00479 * 2 1 3 14 14 C 1.46898 * 111.00319 * 84.99843 * 13 2 1 15 15 C 1.52999 * 109.46898 * 180.02562 * 14 13 2 16 16 H 1.08999 * 115.51592 * 29.62975 * 15 14 13 17 17 C 1.52999 * 117.38468 * 244.32953 * 15 14 13 18 18 H 1.08999 * 119.80991 * 4.61761 * 17 15 14 19 19 C 1.54478 * 118.06862 * 161.90016 * 17 15 14 20 20 O 1.44423 * 104.80626 * 86.81932 * 19 17 15 21 21 C 1.44417 * 105.27899 * 319.49702 * 20 19 17 22 22 C 1.53006 * 117.43066 * 174.99751 * 15 14 13 23 23 H 1.09000 * 119.80899 * 355.31120 * 22 15 14 24 24 H 1.08999 * 109.47013 * 59.99603 * 1 2 3 25 25 H 1.08998 * 109.47234 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47107 * 300.00039 * 1 2 3 27 27 H 1.09001 * 109.47234 * 305.00056 * 4 2 1 28 28 H 1.08993 * 109.47203 * 64.99709 * 4 2 1 29 29 H 0.96993 * 119.99960 * 180.02562 * 8 7 5 30 30 H 1.00899 * 110.99627 * 321.04355 * 13 2 1 31 31 H 1.08992 * 109.47265 * 59.99958 * 14 13 2 32 32 H 1.09005 * 109.47071 * 300.00173 * 14 13 2 33 33 H 1.08998 * 110.37783 * 205.65968 * 19 17 15 34 34 H 1.09006 * 110.36572 * 327.99497 * 19 17 15 35 35 H 1.09000 * 110.37325 * 281.67502 * 21 20 19 36 36 H 1.09001 * 110.37632 * 159.33861 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0861 0.5392 7 6 4.2305 -1.1935 2.3577 8 7 5.5412 -1.1011 2.4129 9 14 3.3016 -2.1087 3.6952 10 1 3.1700 -3.5386 3.3168 11 1 4.0454 -2.0021 4.9761 12 1 1.9509 -1.5130 3.8562 13 7 2.0197 -0.6924 -1.1995 14 6 2.0825 0.2227 -2.3469 15 6 2.5950 -0.5331 -3.5745 16 1 2.3580 -1.5966 -3.6039 17 6 3.9380 -0.0938 -4.1613 18 1 4.5226 0.6771 -3.6592 19 6 4.6759 -1.0732 -5.1007 20 8 4.1349 -0.8047 -6.4126 21 6 2.7192 -0.6066 -6.2071 22 6 2.6210 0.2203 -4.9060 23 1 2.2109 1.2284 -4.9662 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6055 -0.2618 2.1370 28 1 1.7517 -1.7714 1.2056 29 1 6.0256 -1.5085 3.1479 30 1 1.4496 -1.4978 -1.4101 31 1 2.7588 1.0463 -2.1183 32 1 1.0870 0.6165 -2.5525 33 1 5.7483 -0.8785 -5.0854 34 1 4.4723 -2.1038 -4.8100 35 1 2.2154 -1.5656 -6.0861 36 1 2.2883 -0.0534 -7.0416 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695790030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:39 Heat of formation + Delta-G solvation = -19.782981 kcal Electronic energy + Delta-G solvation = -15481.787968 eV Core-core repulsion = 12966.672386 eV Total energy + Delta-G solvation = -2515.115583 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.23577 -36.99306 -34.89383 -32.51361 -30.63517 -28.69491 -27.79508 -26.16180 -23.29519 -22.30069 -20.72380 -20.60070 -19.51439 -16.58124 -16.46841 -15.60760 -15.19103 -14.94493 -14.45471 -14.09354 -13.78493 -13.13573 -12.79287 -12.64061 -12.38337 -12.14754 -11.93464 -11.68811 -11.52226 -11.39338 -10.88650 -10.74635 -10.25839 -10.07908 -9.90098 -9.74722 -9.61004 -9.54094 -9.02224 -8.40464 -7.63185 -5.88952 -3.82673 3.37577 3.44742 3.47031 3.48217 4.01337 4.27500 4.56249 4.60184 4.91528 4.98030 5.10667 5.18334 5.36240 5.46080 5.51477 5.54883 5.57750 5.68580 5.75536 5.77477 5.83844 5.89583 5.96413 6.13723 6.33560 6.37668 6.47403 6.67931 6.79479 7.17720 7.30561 7.79248 7.91722 8.07324 8.74297 9.22376 9.74160 11.25262 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.032196 B = 0.006000 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.466439 B = 4665.351047 C = 5305.473534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.098 3.902 3 H 0.070 0.930 4 C -0.004 4.004 5 C -0.488 4.488 6 H 0.076 0.924 7 C 0.060 3.940 8 N -0.910 5.910 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.660 5.660 14 C 0.090 3.910 15 C -0.094 4.094 16 H 0.105 0.895 17 C -0.179 4.179 18 H 0.123 0.877 19 C 0.072 3.928 20 O -0.379 6.379 21 C 0.075 3.925 22 C -0.204 4.204 23 H 0.118 0.882 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.016 0.984 28 H 0.011 0.989 29 H 0.259 0.741 30 H 0.330 0.670 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.462 1.485 -13.351 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.011 4.011 3 H 0.088 0.912 4 C -0.042 4.042 5 C -0.527 4.527 6 H 0.094 0.906 7 C -0.139 4.139 8 N -0.550 5.550 9 Si 0.703 3.297 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.290 5.290 14 C -0.039 4.039 15 C -0.113 4.113 16 H 0.123 0.877 17 C -0.198 4.198 18 H 0.141 0.859 19 C -0.004 4.004 20 O -0.298 6.298 21 C -0.001 4.001 22 C -0.223 4.223 23 H 0.136 0.864 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.510 1.533 -13.287 15.339 hybrid contribution -1.416 -0.389 0.824 1.684 sum -8.926 1.143 -12.463 15.372 Atomic orbital electron populations 1.22599 0.99426 1.01261 1.00935 1.21561 0.89710 0.98315 0.91534 0.91211 1.19608 0.97888 0.95108 0.91578 1.21032 0.89499 1.33744 1.08376 0.90599 1.25019 0.94683 0.96359 0.97888 1.69913 1.06423 1.46300 1.32374 0.86861 0.80311 0.80620 0.81862 1.20588 1.21707 1.19375 1.60437 1.57681 1.08493 1.02374 1.21485 0.98262 0.95310 0.88855 1.22490 0.97534 0.99591 0.91660 0.87716 1.24301 0.89729 1.02944 1.02783 0.85873 1.22928 0.98767 0.97566 0.81146 1.89143 1.20512 1.91926 1.28221 1.22840 0.83030 0.98318 0.95929 1.24321 1.04154 1.01866 0.91954 0.86396 0.94015 0.93010 0.92426 0.96550 0.97043 0.93109 0.85194 0.90847 0.95605 0.88484 0.91783 0.92200 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 9.16 37.16 0.34 -2.47 16 2 C 0.10 1.88 2.53 -67.71 -0.17 1.71 16 3 H 0.07 1.39 7.80 -51.93 -0.40 0.98 16 4 C 0.00 -0.10 3.72 -27.89 -0.10 -0.20 16 5 C -0.49 -13.91 9.39 -34.44 -0.32 -14.24 16 6 H 0.08 2.36 7.99 -52.48 -0.42 1.95 16 7 C 0.06 1.76 5.47 -17.82 -0.10 1.67 16 8 N -0.91 -28.56 13.96 55.43 0.77 -27.78 16 9 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 13 N -0.66 -11.81 5.96 -106.73 -0.64 -12.45 16 14 C 0.09 1.35 5.76 -3.83 -0.02 1.33 16 15 C -0.09 -1.26 5.50 -90.62 -0.50 -1.75 16 16 H 0.10 1.38 8.13 -51.93 -0.42 0.96 16 17 C -0.18 -2.41 6.82 -89.05 -0.61 -3.02 16 18 H 0.12 1.72 8.13 -51.93 -0.42 1.30 16 19 C 0.07 0.92 7.44 37.93 0.28 1.21 16 20 O -0.38 -5.12 11.65 -35.23 -0.41 -5.53 16 21 C 0.08 0.83 7.44 37.93 0.28 1.11 16 22 C -0.20 -2.38 6.93 -89.05 -0.62 -3.00 16 23 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.04 0.56 7.45 -51.93 -0.39 0.18 16 25 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 26 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 28 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.33 5.36 8.46 -39.29 -0.33 5.03 16 31 H 0.07 1.19 7.85 -51.93 -0.41 0.78 16 32 H 0.03 0.35 7.44 -51.93 -0.39 -0.04 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 293.26 15.07 4.42 4.42 Total: -1.00 -31.42 293.26 -8.13 -39.55 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.07 Total: 2.09 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -1.54 Total: -17.67 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.14 Total: -40.23 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.41 Total: -5.53 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.42 -8.13 -39.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695790030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.766 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds