Wall clock time and date at job start Mon Mar 30 2020 02:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47042 * 2 1 4 4 C 1.52997 * 109.47335 * 120.00116 * 2 1 3 5 5 C 1.50692 * 109.47326 * 185.00265 * 4 2 1 6 6 H 1.08003 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00264 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00299 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47249 * 90.00104 * 9 7 5 11 11 H 1.48499 * 109.47005 * 209.99970 * 9 7 5 12 12 H 1.48497 * 109.47384 * 330.00046 * 9 7 5 13 13 N 1.46900 * 109.47112 * 240.00479 * 2 1 3 14 14 C 1.46898 * 111.00319 * 84.99843 * 13 2 1 15 15 C 1.52999 * 109.46898 * 180.02562 * 14 13 2 16 16 H 1.08999 * 115.51592 * 29.62975 * 15 14 13 17 17 C 1.52999 * 117.38468 * 244.32953 * 15 14 13 18 18 H 1.08999 * 119.80991 * 4.61761 * 17 15 14 19 19 C 1.54478 * 118.06862 * 161.90016 * 17 15 14 20 20 O 1.44423 * 104.80626 * 86.81932 * 19 17 15 21 21 C 1.44417 * 105.27899 * 319.49702 * 20 19 17 22 22 C 1.53006 * 117.43066 * 174.99751 * 15 14 13 23 23 H 1.09000 * 119.80899 * 355.31120 * 22 15 14 24 24 H 1.08999 * 109.47013 * 59.99603 * 1 2 3 25 25 H 1.08998 * 109.47234 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47107 * 300.00039 * 1 2 3 27 27 H 1.09001 * 109.47234 * 305.00056 * 4 2 1 28 28 H 1.08993 * 109.47203 * 64.99709 * 4 2 1 29 29 H 0.96993 * 119.99960 * 180.02562 * 8 7 5 30 30 H 1.00899 * 110.99627 * 321.04355 * 13 2 1 31 31 H 1.08992 * 109.47265 * 59.99958 * 14 13 2 32 32 H 1.09005 * 109.47071 * 300.00173 * 14 13 2 33 33 H 1.08998 * 110.37783 * 205.65968 * 19 17 15 34 34 H 1.09006 * 110.36572 * 327.99497 * 19 17 15 35 35 H 1.09000 * 110.37325 * 281.67502 * 21 20 19 36 36 H 1.09001 * 110.37632 * 159.33861 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0861 0.5392 7 6 4.2305 -1.1935 2.3577 8 7 5.5412 -1.1011 2.4129 9 14 3.3016 -2.1087 3.6952 10 1 3.1700 -3.5386 3.3168 11 1 4.0454 -2.0021 4.9761 12 1 1.9509 -1.5130 3.8562 13 7 2.0197 -0.6924 -1.1995 14 6 2.0825 0.2227 -2.3469 15 6 2.5950 -0.5331 -3.5745 16 1 2.3580 -1.5966 -3.6039 17 6 3.9380 -0.0938 -4.1613 18 1 4.5226 0.6771 -3.6592 19 6 4.6759 -1.0732 -5.1007 20 8 4.1349 -0.8047 -6.4126 21 6 2.7192 -0.6066 -6.2071 22 6 2.6210 0.2203 -4.9060 23 1 2.2109 1.2284 -4.9662 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6055 -0.2618 2.1370 28 1 1.7517 -1.7714 1.2056 29 1 6.0256 -1.5085 3.1479 30 1 1.4496 -1.4978 -1.4101 31 1 2.7588 1.0463 -2.1183 32 1 1.0870 0.6165 -2.5525 33 1 5.7483 -0.8785 -5.0854 34 1 4.4723 -2.1038 -4.8100 35 1 2.2154 -1.5656 -6.0861 36 1 2.2883 -0.0534 -7.0416 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695790030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:38 Heat of formation + Delta-G solvation = -41.544957 kcal Electronic energy + Delta-G solvation = -15482.731638 eV Core-core repulsion = 12966.672386 eV Total energy + Delta-G solvation = -2516.059253 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.23807 -38.39665 -36.07584 -34.59269 -32.19100 -29.63658 -29.54636 -27.32311 -24.79771 -23.82320 -21.94853 -21.59266 -20.98933 -18.75925 -17.51624 -16.69658 -16.52408 -16.16488 -15.97432 -15.56422 -15.22883 -14.56945 -14.24057 -13.96225 -13.74019 -13.51993 -13.37522 -13.13120 -12.93000 -12.54311 -12.40624 -12.09933 -11.85444 -11.68412 -11.47094 -11.24373 -11.03341 -10.87379 -10.66236 -10.57882 -8.98313 -8.16024 -6.14876 1.39059 1.40578 1.51627 2.43858 2.44995 3.06713 3.13311 3.23550 3.57122 3.82599 3.99250 4.07029 4.15330 4.21108 4.35493 4.41641 4.48949 4.54862 4.60912 4.68042 4.76340 4.79489 4.97198 4.98206 5.08535 5.16214 5.22217 5.25491 5.33326 5.53922 5.73044 5.77949 6.33941 6.51571 6.75970 6.93429 7.45728 9.01683 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.032196 B = 0.006000 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.466439 B = 4665.351047 C = 5305.473534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 H 0.052 0.948 4 C -0.003 4.003 5 C -0.489 4.489 6 H 0.031 0.969 7 C -0.007 4.007 8 N -0.961 5.961 9 Si 0.948 3.052 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.246 1.246 13 N -0.685 5.685 14 C 0.098 3.902 15 C -0.099 4.099 16 H 0.108 0.892 17 C -0.205 4.205 18 H 0.109 0.891 19 C 0.073 3.927 20 O -0.395 6.395 21 C 0.071 3.929 22 C -0.178 4.178 23 H 0.132 0.868 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.020 0.980 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.341 0.659 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.152 0.979 -13.828 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.008 4.008 3 H 0.071 0.929 4 C -0.041 4.041 5 C -0.528 4.528 6 H 0.049 0.951 7 C -0.202 4.202 8 N -0.604 5.604 9 Si 0.773 3.227 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.170 1.170 13 N -0.316 5.316 14 C -0.031 4.031 15 C -0.118 4.118 16 H 0.126 0.874 17 C -0.224 4.224 18 H 0.127 0.873 19 C -0.003 4.003 20 O -0.314 6.314 21 C -0.005 4.005 22 C -0.197 4.197 23 H 0.150 0.850 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.160 0.840 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.230 1.035 -13.784 17.197 hybrid contribution -0.511 -0.176 0.897 1.047 sum -10.741 0.859 -12.887 16.799 Atomic orbital electron populations 1.22432 0.95755 1.02414 1.02347 1.21336 0.92519 0.96648 0.90298 0.92920 1.19584 0.94352 0.95978 0.94203 1.21315 0.92246 1.32359 1.06843 0.95102 1.25998 0.95536 0.97707 1.00909 1.70092 1.08542 1.48125 1.33636 0.85689 0.79658 0.79290 0.78075 1.19729 1.21661 1.16956 1.60273 1.58588 1.09650 1.03120 1.21393 0.98988 0.94370 0.88376 1.22411 0.97489 0.99790 0.92061 0.87425 1.24332 0.90562 1.03507 1.03966 0.87323 1.22920 0.99033 0.97409 0.80936 1.89126 1.21949 1.92019 1.28349 1.23072 0.82007 0.99162 0.96217 1.24401 1.01666 1.02241 0.91392 0.85007 0.91761 0.91947 0.91903 0.96159 0.96546 0.93120 0.84028 0.93023 0.93293 0.88155 0.91629 0.91111 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.69 9.16 71.98 0.66 -4.03 16 2 C 0.10 3.78 2.53 44.91 0.11 3.89 16 3 H 0.05 2.10 7.80 -2.38 -0.02 2.09 16 4 C 0.00 -0.16 3.72 29.84 0.11 -0.04 16 5 C -0.49 -28.50 9.39 25.60 0.24 -28.26 16 6 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 7 C -0.01 -0.43 5.47 84.66 0.46 0.04 16 8 N -0.96 -62.18 13.96 21.45 0.30 -61.88 16 9 Si 0.95 45.29 27.47 68.60 1.88 47.17 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 12 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 13 N -0.68 -24.05 5.96 -491.57 -2.93 -26.98 16 14 C 0.10 2.84 5.76 86.30 0.50 3.33 16 15 C -0.10 -2.54 5.50 -10.79 -0.06 -2.60 16 16 H 0.11 2.70 8.13 -2.39 -0.02 2.68 16 17 C -0.21 -5.53 6.82 -9.78 -0.07 -5.60 16 18 H 0.11 3.20 8.13 -2.39 -0.02 3.18 16 19 C 0.07 1.86 7.44 72.48 0.54 2.40 16 20 O -0.39 -10.14 11.65 -148.98 -1.74 -11.88 16 21 C 0.07 1.40 7.44 72.48 0.54 1.94 16 22 C -0.18 -3.83 6.93 -9.77 -0.07 -3.90 16 23 H 0.13 2.47 8.14 -2.39 -0.02 2.46 16 24 H 0.06 1.49 7.45 -2.39 -0.02 1.47 16 25 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 26 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 28 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 29 H 0.26 15.80 8.31 -92.71 -0.77 15.02 16 30 H 0.34 10.50 8.46 -89.69 -0.76 9.74 16 31 H 0.05 1.71 7.85 -2.39 -0.02 1.69 16 32 H 0.05 1.20 7.44 -2.38 -0.02 1.18 16 33 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -68.85 293.26 0.71 -68.13 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.23 Total: 18.26 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 2.97 Total: -32.83 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -2.63 Total: -88.86 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -1.74 Total: -11.88 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Total: -68.85 0.71 -68.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695790030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.589 kcal (2) G-P(sol) polarization free energy of solvation -68.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds