Wall clock time and date at job start Mon Mar 30 2020 02:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99903 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47331 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47042 * 120.00362 * 9 7 5 12 12 H 1.48503 * 109.47111 * 240.00250 * 9 7 5 13 13 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 14 14 C 1.46904 * 110.99716 * 274.99847 * 13 2 1 15 15 C 1.53002 * 109.47049 * 179.97438 * 14 13 2 16 16 H 1.08992 * 109.70127 * 59.41603 * 15 14 13 17 17 C 1.53501 * 109.70524 * 180.02562 * 15 14 13 18 18 C 1.53257 * 108.15612 * 182.08916 * 17 15 14 19 19 C 1.50451 * 109.43968 * 313.17552 * 18 17 15 20 20 C 1.30687 * 122.49343 * 17.49840 * 19 18 17 21 21 O 1.35131 * 123.34486 * 359.53349 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 26 26 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 27 27 H 0.97003 * 119.99498 * 179.97438 * 8 7 5 28 28 H 1.00897 * 110.99997 * 151.04377 * 13 2 1 29 29 H 1.08996 * 109.46868 * 300.00084 * 14 13 2 30 30 H 1.09007 * 109.46973 * 59.99616 * 14 13 2 31 31 H 1.09000 * 109.72543 * 301.74873 * 17 15 14 32 32 H 1.08998 * 109.72390 * 62.42571 * 17 15 14 33 33 H 1.08996 * 109.47538 * 73.15945 * 18 17 15 34 34 H 1.08997 * 109.47510 * 193.18431 * 18 17 15 35 35 H 1.07992 * 118.75009 * 197.48559 * 19 18 17 36 36 H 1.08002 * 118.32447 * 179.56690 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 3.5764 -1.8380 -3.2994 9 14 6.0922 -1.0625 -2.4361 10 1 6.5839 -0.2929 -1.2651 11 1 6.6855 -2.4237 -2.4179 12 1 6.4872 -0.3670 -3.6873 13 7 2.0197 -0.6926 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5951 -0.5332 3.5745 16 1 3.5862 -0.9378 3.3695 17 6 2.6623 0.4182 4.7773 18 6 3.2282 -0.3596 5.9704 19 6 2.5275 -1.6864 6.0809 20 6 1.8443 -2.2039 5.0943 21 8 1.6959 -1.5982 3.8955 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.7516 -1.7716 -1.2056 26 1 1.6054 -0.2618 -2.1370 27 1 4.0608 -2.2448 -4.0348 28 1 2.9173 -1.1206 1.0287 29 1 2.7589 1.0461 2.1182 30 1 1.0871 0.6164 2.5525 31 1 3.3143 1.2601 4.5444 32 1 1.6625 0.7811 5.0155 33 1 4.2957 -0.5236 5.8240 34 1 3.0702 0.2121 6.8848 35 1 2.5917 -2.2319 7.0107 36 1 1.3740 -3.1644 5.2450 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695812792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:30 Heat of formation + Delta-G solvation = -42.913785 kcal Electronic energy + Delta-G solvation = -15669.067167 eV Core-core repulsion = 13152.948557 eV Total energy + Delta-G solvation = -2516.118610 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.93842 -36.56378 -33.83601 -33.16544 -32.01266 -29.60425 -27.36092 -26.13861 -23.69061 -22.99998 -21.77534 -19.45088 -18.72697 -16.75066 -16.35186 -15.93834 -15.06607 -14.89308 -14.41026 -13.98192 -13.73951 -13.15525 -12.95820 -12.84892 -12.45597 -11.84172 -11.77188 -11.52940 -11.21485 -11.20518 -10.85784 -10.67445 -10.54626 -10.48809 -10.25684 -10.07856 -9.20022 -9.04286 -8.39300 -8.28062 -7.58553 -6.02282 -4.05347 2.38630 3.28584 3.36483 3.38835 3.62361 4.43057 4.56731 4.75818 4.94284 5.11781 5.31834 5.34544 5.44180 5.46257 5.62613 5.66238 5.82785 5.87648 5.96208 6.04563 6.21518 6.27106 6.36272 6.37071 6.57490 6.60759 6.97579 6.98915 7.53847 7.64980 7.80910 7.97939 8.09285 8.30357 8.38698 9.00946 9.58678 11.08695 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028185 B = 0.006478 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.206983 B = 4321.330912 C = 4865.334905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.028 0.972 4 C 0.019 3.981 5 C -0.523 4.523 6 H 0.051 0.949 7 C 0.060 3.940 8 N -0.890 5.890 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.675 5.675 14 C 0.066 3.934 15 C 0.094 3.906 16 H 0.070 0.930 17 C -0.155 4.155 18 C -0.077 4.077 19 C -0.303 4.303 20 C 0.065 3.935 21 O -0.298 6.298 22 H 0.047 0.953 23 H 0.035 0.965 24 H 0.055 0.945 25 H 0.027 0.973 26 H 0.021 0.979 27 H 0.260 0.740 28 H 0.353 0.647 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.075 3.031 15.700 16.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 H 0.046 0.954 4 C -0.018 4.018 5 C -0.561 4.561 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.529 5.529 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.309 5.309 14 C -0.064 4.064 15 C 0.037 3.963 16 H 0.088 0.912 17 C -0.193 4.193 18 C -0.114 4.114 19 C -0.323 4.323 20 C 0.001 3.999 21 O -0.210 6.210 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.174 0.826 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.132 0.868 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.805 2.649 15.524 15.996 hybrid contribution 2.069 0.594 -0.084 2.154 sum -0.736 3.243 15.440 15.794 Atomic orbital electron populations 1.21784 0.96680 1.01426 0.99333 1.21619 0.93466 0.95697 0.91391 0.95441 1.19290 0.95367 0.96312 0.90809 1.21202 0.92260 1.34393 1.08271 0.93053 1.24992 0.98210 0.95204 0.95734 1.69976 1.35372 1.35626 1.11951 0.86586 0.86017 0.77775 0.77889 1.19904 1.20962 1.21042 1.60504 1.34711 1.31691 1.03999 1.21991 1.00678 0.93691 0.90032 1.22588 0.92821 0.86736 0.94140 0.91247 1.22256 1.02583 0.98761 0.95703 1.20281 0.99185 0.93932 0.98022 1.22406 1.09565 1.00262 1.00053 1.22105 0.97101 0.95922 0.84769 1.86120 1.54631 1.47745 1.32535 0.93417 0.94544 0.92556 0.95488 0.96033 0.93003 0.82562 0.94009 0.90961 0.90361 0.90743 0.91558 0.91124 0.86752 0.83091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.41 37.16 0.35 -2.15 16 2 C 0.09 1.85 2.59 -67.71 -0.18 1.67 16 3 H 0.03 0.59 7.80 -51.93 -0.40 0.18 16 4 C 0.02 0.50 4.57 -27.88 -0.13 0.38 16 5 C -0.52 -14.39 8.12 -34.44 -0.28 -14.67 16 6 H 0.05 1.37 7.49 -52.49 -0.39 0.98 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.68 -13.36 6.20 -106.72 -0.66 -14.02 16 14 C 0.07 1.07 5.20 -3.82 -0.02 1.05 16 15 C 0.09 1.37 3.05 -26.47 -0.08 1.29 16 16 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 17 C -0.15 -1.82 5.54 -26.34 -0.15 -1.97 16 18 C -0.08 -0.84 6.23 -27.87 -0.17 -1.02 16 19 C -0.30 -3.52 9.97 -36.06 -0.36 -3.88 16 20 C 0.06 0.84 10.88 29.10 0.32 1.15 16 21 O -0.30 -4.72 9.94 -17.09 -0.17 -4.89 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.61 7.45 -51.93 -0.39 0.22 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 28 H 0.35 7.55 7.21 -39.29 -0.28 7.27 16 29 H 0.04 0.65 8.05 -51.93 -0.42 0.24 16 30 H 0.07 1.14 7.44 -51.93 -0.39 0.75 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 294.46 15.07 4.44 4.44 Total: -1.00 -29.72 294.46 -7.53 -37.25 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.06 Total: 3.21 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -0.79 Total: -16.54 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.07 Total: -39.86 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.17 Total: -4.89 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.72 -7.53 -37.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.665 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds