Wall clock time and date at job start Mon Mar 30 2020 02:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99903 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47331 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47042 * 120.00362 * 9 7 5 12 12 H 1.48503 * 109.47111 * 240.00250 * 9 7 5 13 13 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 14 14 C 1.46904 * 110.99716 * 274.99847 * 13 2 1 15 15 C 1.53002 * 109.47049 * 179.97438 * 14 13 2 16 16 H 1.08992 * 109.70127 * 59.41603 * 15 14 13 17 17 C 1.53501 * 109.70524 * 180.02562 * 15 14 13 18 18 C 1.53257 * 108.15612 * 182.08916 * 17 15 14 19 19 C 1.50451 * 109.43968 * 313.17552 * 18 17 15 20 20 C 1.30687 * 122.49343 * 17.49840 * 19 18 17 21 21 O 1.35131 * 123.34486 * 359.53349 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 26 26 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 27 27 H 0.97003 * 119.99498 * 179.97438 * 8 7 5 28 28 H 1.00897 * 110.99997 * 151.04377 * 13 2 1 29 29 H 1.08996 * 109.46868 * 300.00084 * 14 13 2 30 30 H 1.09007 * 109.46973 * 59.99616 * 14 13 2 31 31 H 1.09000 * 109.72543 * 301.74873 * 17 15 14 32 32 H 1.08998 * 109.72390 * 62.42571 * 17 15 14 33 33 H 1.08996 * 109.47538 * 73.15945 * 18 17 15 34 34 H 1.08997 * 109.47510 * 193.18431 * 18 17 15 35 35 H 1.07992 * 118.75009 * 197.48559 * 19 18 17 36 36 H 1.08002 * 118.32447 * 179.56690 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 3.5764 -1.8380 -3.2994 9 14 6.0922 -1.0625 -2.4361 10 1 6.5839 -0.2929 -1.2651 11 1 6.6855 -2.4237 -2.4179 12 1 6.4872 -0.3670 -3.6873 13 7 2.0197 -0.6926 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5951 -0.5332 3.5745 16 1 3.5862 -0.9378 3.3695 17 6 2.6623 0.4182 4.7773 18 6 3.2282 -0.3596 5.9704 19 6 2.5275 -1.6864 6.0809 20 6 1.8443 -2.2039 5.0943 21 8 1.6959 -1.5982 3.8955 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.7516 -1.7716 -1.2056 26 1 1.6054 -0.2618 -2.1370 27 1 4.0608 -2.2448 -4.0348 28 1 2.9173 -1.1206 1.0287 29 1 2.7589 1.0461 2.1182 30 1 1.0871 0.6164 2.5525 31 1 3.3143 1.2601 4.5444 32 1 1.6625 0.7811 5.0155 33 1 4.2957 -0.5236 5.8240 34 1 3.0702 0.2121 6.8848 35 1 2.5917 -2.2319 7.0107 36 1 1.3740 -3.1644 5.2450 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:30 Heat of formation + Delta-G solvation = -61.832191 kcal Electronic energy + Delta-G solvation = -15669.887530 eV Core-core repulsion = 13152.948557 eV Total energy + Delta-G solvation = -2516.938973 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.98383 -38.19131 -35.05562 -34.74471 -33.56545 -30.97740 -29.28747 -27.34105 -25.17892 -24.44557 -23.06272 -21.13107 -19.79380 -18.51490 -17.76636 -17.07048 -16.59342 -16.43139 -15.96352 -15.23729 -14.92950 -14.75220 -14.09836 -13.91984 -13.75755 -13.49165 -13.41407 -13.18223 -12.91079 -12.63325 -12.55915 -12.34153 -12.08061 -11.77022 -11.58320 -11.37040 -11.10911 -10.95027 -10.58122 -9.24772 -9.14301 -8.19271 -6.29963 1.39205 1.39919 1.45778 1.51788 2.40096 2.60182 3.11536 3.33355 3.79837 3.95045 4.00947 4.24315 4.30858 4.35853 4.51813 4.57806 4.62797 4.71805 4.75675 4.80829 4.90779 5.00116 5.02674 5.21057 5.22787 5.34719 5.43966 5.49113 5.54972 5.71488 5.84402 6.20707 6.41056 6.62658 6.83084 6.85505 7.38815 8.92772 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028185 B = 0.006478 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.206983 B = 4321.330912 C = 4865.334905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.096 3.904 3 H 0.029 0.971 4 C 0.026 3.974 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.003 3.997 8 N -0.931 5.931 9 Si 0.962 3.038 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.280 1.280 13 N -0.682 5.682 14 C 0.068 3.932 15 C 0.093 3.907 16 H 0.059 0.941 17 C -0.148 4.148 18 C -0.082 4.082 19 C -0.292 4.292 20 C 0.036 3.964 21 O -0.326 6.326 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.045 0.955 25 H -0.005 1.005 26 H -0.004 1.004 27 H 0.263 0.737 28 H 0.341 0.659 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 4.010 17.694 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.014 4.014 3 H 0.047 0.953 4 C -0.011 4.011 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.787 3.213 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.206 1.206 13 N -0.315 5.315 14 C -0.062 4.062 15 C 0.037 3.963 16 H 0.077 0.923 17 C -0.186 4.186 18 C -0.119 4.119 19 C -0.311 4.311 20 C -0.027 4.027 21 O -0.240 6.240 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.013 0.987 26 H 0.014 0.986 27 H 0.072 0.928 28 H 0.160 0.840 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.152 0.848 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.863 3.641 17.547 18.017 hybrid contribution 1.742 0.274 -0.655 1.881 sum -0.121 3.915 16.892 17.340 Atomic orbital electron populations 1.21701 0.94670 1.01257 1.00843 1.21439 0.95057 0.94871 0.90029 0.95347 1.19148 0.94992 0.94664 0.92297 1.21545 0.93174 1.34046 1.08309 0.92314 1.25919 1.03459 0.94806 0.95355 1.70112 1.37521 1.36748 1.12759 0.85445 0.79675 0.77903 0.78273 1.18538 1.20617 1.20601 1.60526 1.33955 1.32688 1.04330 1.22059 1.01379 0.93474 0.89254 1.22529 0.91967 0.87220 0.94634 0.92294 1.22226 1.03166 0.98574 0.94673 1.20392 0.99280 0.93727 0.98474 1.22735 1.07797 1.00363 1.00221 1.22477 0.98900 0.96994 0.84344 1.86069 1.55287 1.48491 1.34187 0.92754 0.92145 0.93565 0.98676 0.98576 0.92845 0.83967 0.93169 0.90348 0.88848 0.90606 0.91069 0.89034 0.84774 0.81511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.41 71.98 0.68 -3.97 16 2 C 0.10 4.05 2.59 44.91 0.12 4.17 16 3 H 0.03 1.20 7.80 -2.39 -0.02 1.18 16 4 C 0.03 1.40 4.57 29.85 0.14 1.54 16 5 C -0.53 -29.66 8.12 25.60 0.21 -29.45 16 6 H 0.06 3.12 7.49 -2.91 -0.02 3.09 16 7 C 0.00 0.15 5.46 84.65 0.46 0.61 16 8 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 9 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.68 -26.96 6.20 -491.55 -3.05 -30.01 16 14 C 0.07 2.11 5.20 86.30 0.45 2.55 16 15 C 0.09 2.61 3.05 30.76 0.09 2.70 16 16 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 17 C -0.15 -3.13 5.54 30.85 0.17 -2.96 16 18 C -0.08 -1.55 6.23 29.86 0.19 -1.36 16 19 C -0.29 -6.06 9.97 25.89 0.26 -5.80 16 20 C 0.04 0.87 10.88 68.10 0.74 1.61 16 21 O -0.33 -10.14 9.94 -84.08 -0.84 -10.98 16 22 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.06 1.91 7.45 -2.39 -0.02 1.89 16 24 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 25 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 26 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 27 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.34 14.77 7.21 -89.70 -0.65 14.12 16 29 H 0.05 1.48 8.05 -2.39 -0.02 1.46 16 30 H 0.08 2.34 7.44 -2.38 -0.02 2.32 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -63.99 294.46 2.31 -61.68 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.39 Total: 20.12 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 3.50 Total: -30.36 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -2.76 Total: -86.47 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.84 Total: -10.98 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -63.99 2.31 -61.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.155 kcal (2) G-P(sol) polarization free energy of solvation -63.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds