Wall clock time and date at job start Mon Mar 30 2020 02:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50699 * 109.47482 * 174.99860 * 4 2 1 6 6 H 1.08000 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00220 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99957 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00316 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46563 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46947 * 119.99839 * 9 7 5 12 12 H 1.48494 * 109.47178 * 240.00424 * 9 7 5 13 13 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 14 14 C 1.46895 * 111.00561 * 275.00137 * 13 2 1 15 15 C 1.53003 * 109.47339 * 179.97438 * 14 13 2 16 16 H 1.09000 * 109.70432 * 304.99860 * 15 14 13 17 17 C 1.53508 * 109.70575 * 184.41829 * 15 14 13 18 18 C 1.53235 * 108.16697 * 177.96718 * 17 15 14 19 19 C 1.50436 * 109.47480 * 46.75000 * 18 17 15 20 20 C 1.30696 * 122.49434 * 342.53739 * 19 18 17 21 21 O 1.35131 * 123.34338 * 0.46332 * 20 19 18 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 26 26 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 27 27 H 0.96998 * 119.99888 * 180.02562 * 8 7 5 28 28 H 1.00906 * 110.99706 * 38.96022 * 13 2 1 29 29 H 1.09004 * 109.46925 * 300.00216 * 14 13 2 30 30 H 1.09001 * 109.46797 * 59.99650 * 14 13 2 31 31 H 1.08998 * 109.72435 * 297.57720 * 17 15 14 32 32 H 1.08996 * 109.72441 * 58.24465 * 17 15 14 33 33 H 1.09001 * 109.43731 * 286.76125 * 18 17 15 34 34 H 1.09008 * 109.48511 * 166.76618 * 18 17 15 35 35 H 1.07995 * 118.75734 * 162.52249 * 19 18 17 36 36 H 1.07992 * 118.32468 * 180.43172 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 3.5765 -1.8379 -3.2993 9 14 6.0922 -1.0611 -2.4367 10 1 6.5837 -0.2907 -1.2662 11 1 6.6864 -2.4218 -2.4180 12 1 6.4862 -0.3659 -3.6883 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2226 2.3469 15 6 2.5950 -0.5331 3.5746 16 1 1.9715 -1.4091 3.7537 17 6 2.5585 0.3880 4.8020 18 6 3.0292 -0.4172 6.0178 19 6 4.2801 -1.1744 5.6641 20 6 4.6469 -1.3858 4.4276 21 8 3.9492 -0.9406 3.3594 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.7517 -1.7715 -1.2055 26 1 1.6055 -0.2617 -2.1369 27 1 4.0610 -2.2453 -4.0343 28 1 1.4495 -1.4979 1.4101 29 1 2.7588 1.0463 2.1182 30 1 1.0870 0.6164 2.5525 31 1 3.2233 1.2373 4.6445 32 1 1.5408 0.7422 4.9660 33 1 2.2496 -1.1201 6.3113 34 1 3.2370 0.2615 6.8451 35 1 4.8985 -1.5578 6.4621 36 1 5.5542 -1.9442 4.2506 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812801.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:32 Heat of formation + Delta-G solvation = -58.386264 kcal Electronic energy + Delta-G solvation = -15720.847698 eV Core-core repulsion = 13204.058151 eV Total energy + Delta-G solvation = -2516.789547 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.97765 -38.21415 -35.03162 -34.73325 -33.53650 -30.98167 -29.09902 -27.27706 -25.10275 -24.45931 -23.12415 -21.44696 -19.73082 -18.38271 -17.71663 -17.09831 -16.55037 -16.21412 -15.78608 -15.33587 -14.83990 -14.67668 -14.23306 -13.94044 -13.73299 -13.58947 -13.35106 -13.16113 -12.95552 -12.70803 -12.53676 -12.35271 -11.90687 -11.74391 -11.60533 -11.34284 -11.07979 -10.95551 -10.47609 -9.24424 -8.94482 -8.08594 -6.12377 1.39901 1.41281 1.45316 1.55187 2.48653 2.63597 3.21278 3.33605 3.81429 3.97912 4.02568 4.25229 4.26181 4.35685 4.48031 4.53065 4.55994 4.63117 4.73100 4.80492 4.96959 4.99203 5.00455 5.23119 5.26253 5.29533 5.45459 5.51944 5.68974 5.71136 5.92101 6.34804 6.50925 6.74134 6.87132 7.01803 7.52916 9.03814 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025027 B = 0.007419 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.534529 B = 3773.294632 C = 4698.596718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 H 0.057 0.943 4 C 0.036 3.964 5 C -0.494 4.494 6 H 0.052 0.948 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.956 3.044 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.279 1.279 13 N -0.681 5.681 14 C 0.071 3.929 15 C 0.092 3.908 16 H 0.070 0.930 17 C -0.149 4.149 18 C -0.080 4.080 19 C -0.290 4.290 20 C 0.033 3.967 21 O -0.333 6.333 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.069 0.931 25 H -0.010 1.010 26 H -0.007 1.007 27 H 0.258 0.742 28 H 0.336 0.664 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.815 3.764 18.647 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 H 0.076 0.924 4 C -0.001 4.001 5 C -0.532 4.532 6 H 0.070 0.930 7 C -0.203 4.203 8 N -0.584 5.584 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.205 1.205 13 N -0.312 5.312 14 C -0.058 4.058 15 C 0.036 3.964 16 H 0.088 0.912 17 C -0.187 4.187 18 C -0.116 4.116 19 C -0.309 4.309 20 C -0.029 4.029 21 O -0.247 6.247 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.008 0.992 26 H 0.011 0.989 27 H 0.067 0.933 28 H 0.154 0.846 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.151 0.849 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.058 3.793 18.133 18.776 hybrid contribution 0.086 -0.224 -0.186 0.304 sum -2.973 3.568 17.947 18.538 Atomic orbital electron populations 1.22411 0.96381 1.01840 1.02126 1.21459 0.92251 0.96732 0.90636 0.92437 1.19012 0.95013 0.94212 0.91864 1.21505 0.93541 1.31992 1.06192 0.93004 1.25849 1.02848 0.95789 0.95848 1.70098 1.36901 1.38271 1.13158 0.85531 0.80828 0.77677 0.77780 1.19385 1.20859 1.20493 1.60261 1.58506 1.09324 1.03083 1.22010 0.99569 0.95097 0.89153 1.22618 0.81328 0.97260 0.95240 0.91195 1.22236 1.03902 0.98249 0.94305 1.20385 0.95278 0.98386 0.97599 1.22736 1.03309 1.08545 0.96341 1.22412 0.96861 0.96615 0.87054 1.86134 1.25895 1.78467 1.34214 0.92837 0.92500 0.91258 0.99174 0.98863 0.93308 0.84622 0.92124 0.91464 0.91453 0.88045 0.90408 0.89163 0.84899 0.82390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.38 9.16 71.98 0.66 -4.72 16 2 C 0.10 4.04 2.53 44.91 0.11 4.15 16 3 H 0.06 2.41 7.80 -2.39 -0.02 2.39 16 4 C 0.04 1.96 4.65 29.85 0.14 2.10 16 5 C -0.49 -29.39 8.84 25.60 0.23 -29.17 16 6 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 7 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 8 N -0.94 -59.62 13.29 21.45 0.28 -59.34 16 9 Si 0.96 47.55 29.54 68.60 2.03 49.57 16 10 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 13 N -0.68 -25.83 5.92 -491.58 -2.91 -28.75 16 14 C 0.07 2.11 5.18 86.31 0.45 2.56 16 15 C 0.09 2.49 3.03 30.77 0.09 2.58 16 16 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 17 C -0.15 -3.02 5.55 30.84 0.17 -2.85 16 18 C -0.08 -1.45 6.23 29.84 0.19 -1.26 16 19 C -0.29 -6.30 9.97 25.88 0.26 -6.05 16 20 C 0.03 0.91 10.88 68.09 0.74 1.65 16 21 O -0.33 -11.33 10.01 -84.08 -0.84 -12.17 16 22 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 23 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.07 1.77 7.45 -2.38 -0.02 1.75 16 25 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 26 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 27 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.34 11.79 8.47 -89.69 -0.76 11.03 16 29 H 0.06 2.02 8.06 -2.39 -0.02 2.00 16 30 H 0.07 1.60 7.44 -2.39 -0.02 1.58 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.16 3.79 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -69.85 296.20 2.33 -67.52 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.27 Total: 14.17 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 3.50 Total: -31.01 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -2.63 Total: -88.08 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.84 Total: -12.17 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.57 kcal Total: -69.85 2.33 -67.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812801.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.136 kcal (2) G-P(sol) polarization free energy of solvation -69.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds