Wall clock time and date at job start Mon Mar 30 2020 02:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47453 * 2 1 4 4 C 1.53002 * 109.47029 * 119.99905 * 2 1 3 5 5 C 1.50697 * 109.47032 * 184.99800 * 4 2 1 6 6 H 1.07999 * 120.00003 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99874 * 180.02562 * 5 4 2 8 8 N 1.31522 * 120.00118 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00018 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47056 * 89.99976 * 9 7 5 11 11 H 1.48506 * 109.47113 * 209.99974 * 9 7 5 12 12 H 1.48497 * 109.47029 * 330.00155 * 9 7 5 13 13 N 1.46900 * 109.46927 * 239.99974 * 2 1 3 14 14 C 1.46901 * 110.99852 * 85.00109 * 13 2 1 15 15 C 1.50707 * 109.46707 * 179.97438 * 14 13 2 16 16 C 1.29983 * 118.56346 * 95.02404 * 15 14 13 17 17 C 1.50472 * 122.52735 * 180.37712 * 16 15 14 18 18 C 1.53131 * 109.54624 * 343.39352 * 17 16 15 19 19 O 1.43308 * 108.41350 * 47.83141 * 18 17 16 20 20 C 1.42895 * 113.01757 * 291.77917 * 19 18 17 21 21 H 1.08998 * 109.47453 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47335 * 300.00139 * 1 2 3 23 23 H 1.09001 * 109.47239 * 59.99866 * 1 2 3 24 24 H 1.08992 * 109.47429 * 305.00361 * 4 2 1 25 25 H 1.09007 * 109.46794 * 65.00255 * 4 2 1 26 26 H 0.96996 * 119.99838 * 180.02562 * 8 7 5 27 27 H 1.00896 * 110.99631 * 208.95508 * 13 2 1 28 28 H 1.09000 * 109.46628 * 60.00228 * 14 13 2 29 29 H 1.08993 * 109.47313 * 300.00043 * 14 13 2 30 30 H 1.08006 * 118.74326 * 0.38524 * 16 15 14 31 31 H 1.08995 * 109.49519 * 223.35823 * 17 16 15 32 32 H 1.09001 * 109.44870 * 103.40501 * 17 16 15 33 33 H 1.09002 * 109.68458 * 288.08961 * 18 17 16 34 34 H 1.08999 * 109.67990 * 167.57310 * 18 17 16 35 35 H 1.09003 * 109.36153 * 170.38890 * 20 19 18 36 36 H 1.09000 * 109.35769 * 290.10987 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0862 0.5392 7 6 4.2303 -1.1935 2.3578 8 7 3.5764 -1.8387 3.2990 9 14 6.0920 -1.0612 2.4368 10 1 6.4698 0.1609 3.1911 11 1 6.6446 -2.2568 3.1227 12 1 6.6416 -0.9824 1.0595 13 7 2.0196 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3469 15 6 2.5884 -0.5216 -3.5557 16 6 1.7218 -1.0200 -4.3865 17 6 2.1278 -1.7858 -5.6165 18 6 3.6033 -1.5156 -5.9245 19 8 4.3541 -1.6698 -4.7136 20 6 4.0723 -0.6546 -3.7483 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 1.6054 -0.2618 2.1370 25 1 1.7516 -1.7716 1.2056 26 1 4.0608 -2.2454 4.0344 27 1 2.9172 -1.1205 -1.0287 28 1 2.7589 1.0461 -2.1181 29 1 1.0871 0.6164 -2.5525 30 1 0.6699 -0.8789 -4.1864 31 1 1.5166 -1.4680 -6.4611 32 1 1.9822 -2.8523 -5.4445 33 1 3.7195 -0.4996 -6.3016 34 1 3.9588 -2.2268 -6.6700 35 1 4.5376 -0.9195 -2.7989 36 1 4.4763 0.2963 -4.0957 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:23 Heat of formation + Delta-G solvation = -67.817381 kcal Electronic energy + Delta-G solvation = -15667.149517 eV Core-core repulsion = 13149.951007 eV Total energy + Delta-G solvation = -2517.198510 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.43497 -38.29613 -35.56924 -34.46466 -32.95563 -30.70292 -29.29088 -26.62994 -26.07071 -24.94039 -23.20323 -21.16186 -19.04716 -18.52581 -17.44463 -17.17097 -16.64940 -16.39338 -16.09883 -15.42801 -14.84679 -14.68477 -14.19280 -13.85946 -13.65566 -13.49803 -13.38767 -13.15326 -12.95605 -12.66276 -12.57241 -12.40404 -12.18827 -12.01825 -11.48225 -11.21833 -11.03594 -10.58754 -10.52450 -9.81226 -9.18911 -8.20287 -6.30948 1.17879 1.38853 1.40022 1.50396 2.39467 2.95738 3.11847 3.52250 3.78346 3.88010 4.08551 4.27551 4.31539 4.39703 4.46090 4.53313 4.60636 4.67289 4.71239 4.74883 4.81426 5.00574 5.02545 5.07361 5.20075 5.32414 5.47398 5.52112 5.59412 5.82841 5.94300 6.19358 6.19690 6.39638 6.59357 6.84086 7.37920 8.91420 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025142 B = 0.007220 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.408043 B = 3877.301284 C = 4742.277734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.094 3.906 3 H 0.027 0.973 4 C 0.027 3.973 5 C -0.534 4.534 6 H 0.057 0.943 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.263 1.263 13 N -0.681 5.681 14 C 0.099 3.901 15 C -0.173 4.173 16 C -0.130 4.130 17 C -0.123 4.123 18 C 0.049 3.951 19 O -0.401 6.401 20 C 0.097 3.903 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.062 0.938 24 H -0.004 1.004 25 H -0.005 1.005 26 H 0.263 0.737 27 H 0.341 0.659 28 H 0.026 0.974 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 3.588 -17.870 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.016 4.016 3 H 0.045 0.955 4 C -0.011 4.011 5 C -0.572 4.572 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.187 1.187 13 N -0.314 5.314 14 C -0.030 4.030 15 C -0.173 4.173 16 C -0.150 4.150 17 C -0.160 4.160 18 C -0.027 4.027 19 O -0.320 6.320 20 C 0.020 3.980 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.072 0.928 27 H 0.160 0.840 28 H 0.045 0.955 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.133 0.867 35 H 0.103 0.897 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.616 3.107 -17.840 18.297 hybrid contribution 1.371 0.604 1.004 1.803 sum -1.245 3.711 -16.837 17.286 Atomic orbital electron populations 1.21704 0.94390 1.01374 1.01014 1.21467 0.95220 0.94859 0.90019 0.95534 1.19143 0.94923 0.94673 0.92315 1.21507 0.93240 1.34149 1.08331 0.92464 1.25894 1.03369 0.94760 0.95363 1.70095 1.37580 1.36637 1.12729 0.85535 0.79767 0.77623 0.78670 1.19949 1.20952 1.18694 1.60682 1.33947 1.32484 1.04266 1.20954 1.00172 0.92926 0.88907 1.21537 0.96100 1.02730 0.96953 1.22305 0.99318 0.97152 0.96178 1.21187 0.97380 1.00558 0.96849 1.22916 0.90735 1.02652 0.86398 1.88108 1.65338 1.51357 1.27195 1.21316 0.92186 0.91794 0.92693 0.93357 0.92779 0.91897 0.98548 0.98617 0.92820 0.83972 0.95543 0.90023 0.86642 0.87407 0.90184 0.91758 0.86739 0.89671 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.41 71.98 0.68 -3.81 16 2 C 0.09 3.94 2.59 44.92 0.12 4.06 16 3 H 0.03 1.12 7.80 -2.39 -0.02 1.11 16 4 C 0.03 1.42 4.57 29.85 0.14 1.56 16 5 C -0.53 -29.90 8.12 25.60 0.21 -29.69 16 6 H 0.06 3.07 7.49 -2.91 -0.02 3.04 16 7 C 0.00 0.25 5.46 84.65 0.46 0.71 16 8 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 9 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 13 N -0.68 -26.56 6.30 -495.57 -3.12 -29.68 16 14 C 0.10 3.09 5.54 85.56 0.47 3.57 16 15 C -0.17 -4.86 5.44 -15.58 -0.08 -4.95 16 16 C -0.13 -3.19 9.54 26.63 0.25 -2.94 16 17 C -0.12 -2.33 6.37 29.82 0.19 -2.14 16 18 C 0.05 0.96 6.89 72.03 0.50 1.46 16 19 O -0.40 -11.39 10.84 -148.98 -1.62 -13.00 16 20 C 0.10 2.73 6.76 71.09 0.48 3.21 16 21 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.06 1.88 7.45 -2.39 -0.02 1.86 16 24 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 26 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 27 H 0.34 14.86 7.20 -89.70 -0.65 14.22 16 28 H 0.03 0.84 8.04 -2.39 -0.02 0.82 16 29 H 0.08 2.32 7.15 -2.39 -0.02 2.30 16 30 H 0.12 2.69 7.83 -2.91 -0.02 2.67 16 31 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 34 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -64.29 294.63 1.38 -62.91 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.39 Total: 18.88 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: 3.41 Total: -28.98 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -2.84 Total: -86.21 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -1.62 Total: -13.00 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.29 1.38 -62.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.906 kcal (2) G-P(sol) polarization free energy of solvation -64.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds