Wall clock time and date at job start Mon Mar 30 2020 02:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47074 * 2 1 4 4 C 1.53000 * 109.47342 * 240.00749 * 2 1 3 5 5 C 1.50700 * 109.47510 * 174.99854 * 4 2 1 6 6 H 1.07998 * 119.99534 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00380 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99595 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00029 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47345 * 90.00186 * 9 7 5 11 11 H 1.48503 * 109.46771 * 210.00050 * 9 7 5 12 12 H 1.48502 * 109.47241 * 329.99574 * 9 7 5 13 13 N 1.46898 * 109.47438 * 119.99953 * 2 1 3 14 14 C 1.46894 * 111.00226 * 275.00488 * 13 2 1 15 15 C 1.50697 * 109.47157 * 179.97438 * 14 13 2 16 16 C 1.29983 * 118.56933 * 94.99746 * 15 14 13 17 17 C 1.50385 * 122.51709 * 180.43394 * 16 15 14 18 18 C 1.53132 * 109.57403 * 343.36614 * 17 16 15 19 19 O 1.43228 * 108.42495 * 47.83481 * 18 17 16 20 20 C 1.42901 * 113.02057 * 291.81739 * 19 18 17 21 21 H 1.09001 * 109.47590 * 59.99942 * 1 2 3 22 22 H 1.09010 * 109.46701 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47327 * 299.99583 * 1 2 3 24 24 H 1.09007 * 109.46564 * 294.99561 * 4 2 1 25 25 H 1.09003 * 109.47346 * 54.99106 * 4 2 1 26 26 H 0.97001 * 119.99432 * 180.02562 * 8 7 5 27 27 H 1.00900 * 111.00069 * 151.04679 * 13 2 1 28 28 H 1.08996 * 109.47317 * 59.99891 * 14 13 2 29 29 H 1.08997 * 109.47078 * 299.99635 * 14 13 2 30 30 H 1.08005 * 118.74280 * 0.41520 * 16 15 14 31 31 H 1.09002 * 109.45164 * 103.39111 * 17 16 15 32 32 H 1.08997 * 109.45404 * 223.34191 * 17 16 15 33 33 H 1.08991 * 109.68513 * 167.55267 * 18 17 16 34 34 H 1.08998 * 109.68267 * 288.10959 * 18 17 16 35 35 H 1.08996 * 109.36403 * 289.96124 * 20 19 18 36 36 H 1.09001 * 109.24930 * 170.30025 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3128 6 1 4.0789 -0.0854 -0.5397 7 6 4.2305 -1.1932 -2.3579 8 7 3.5764 -1.8374 -3.2997 9 14 6.0920 -1.0607 -2.4369 10 1 6.7010 -2.2126 -1.7247 11 1 6.5290 -1.0691 -3.8562 12 1 6.5260 0.2051 -1.7929 13 7 2.0197 -0.6925 1.1994 14 6 2.0824 0.2225 2.3469 15 6 2.5874 -0.5219 3.5559 16 6 3.8566 -0.4715 3.8316 17 6 4.4570 -1.1880 5.0097 18 6 3.3485 -1.5826 5.9896 19 8 2.2893 -2.2010 5.2498 20 6 1.6018 -1.2895 4.3904 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.7517 -1.7714 -1.2057 25 1 1.6053 -0.2616 -2.1370 26 1 4.0609 -2.2447 -4.0348 27 1 2.9174 -1.1204 1.0287 28 1 1.0871 0.6162 2.5525 29 1 2.7588 1.0461 2.1182 30 1 4.5049 0.1068 3.1900 31 1 4.9729 -2.0842 4.6651 32 1 5.1673 -0.5305 5.5109 33 1 3.7411 -2.2852 6.7245 34 1 2.9720 -0.6936 6.4955 35 1 1.0195 -0.5932 4.9938 36 1 0.9322 -1.8480 3.7362 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:25 Heat of formation + Delta-G solvation = -68.120641 kcal Electronic energy + Delta-G solvation = -15651.675383 eV Core-core repulsion = 13134.463722 eV Total energy + Delta-G solvation = -2517.211661 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.42522 -38.30547 -35.58735 -34.47738 -32.92728 -30.72579 -29.29302 -26.46077 -26.18619 -24.94511 -23.24775 -21.15726 -19.00645 -18.52742 -17.45810 -17.20554 -16.63309 -16.35504 -16.11244 -15.44313 -14.86528 -14.69126 -14.16645 -13.75535 -13.63299 -13.45922 -13.40355 -13.28360 -13.10321 -12.63716 -12.53861 -12.38657 -12.23563 -11.88391 -11.50724 -11.24214 -11.03652 -10.59936 -10.52533 -9.86192 -9.19723 -8.21550 -6.32162 1.12948 1.37147 1.38045 1.48064 2.37898 3.00289 3.10424 3.52141 3.78491 3.86159 4.06652 4.27303 4.31090 4.42251 4.49406 4.55721 4.61805 4.70483 4.72762 4.76141 4.82473 5.01281 5.04496 5.05345 5.20338 5.32899 5.46927 5.50491 5.55207 5.82233 5.88485 6.18441 6.22707 6.38706 6.58442 6.82803 7.36508 8.90156 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025090 B = 0.007106 C = 0.005897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.703415 B = 3939.208902 C = 4746.650614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.094 3.906 3 H 0.025 0.975 4 C 0.027 3.973 5 C -0.535 4.535 6 H 0.055 0.945 7 C 0.004 3.996 8 N -0.929 5.929 9 Si 0.960 3.040 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.266 1.266 13 N -0.680 5.680 14 C 0.097 3.903 15 C -0.158 4.158 16 C -0.156 4.156 17 C -0.123 4.123 18 C 0.053 3.947 19 O -0.401 6.401 20 C 0.104 3.896 21 H 0.053 0.947 22 H 0.049 0.951 23 H 0.064 0.936 24 H -0.004 1.004 25 H -0.004 1.004 26 H 0.263 0.737 27 H 0.341 0.659 28 H 0.084 0.916 29 H 0.024 0.976 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.811 3.861 17.408 17.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.015 4.015 3 H 0.043 0.957 4 C -0.011 4.011 5 C -0.573 4.573 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.190 1.190 13 N -0.312 5.312 14 C -0.032 4.032 15 C -0.159 4.159 16 C -0.175 4.175 17 C -0.160 4.160 18 C -0.023 4.023 19 O -0.320 6.320 20 C 0.028 3.972 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.072 0.928 27 H 0.160 0.840 28 H 0.103 0.897 29 H 0.042 0.958 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.473 3.338 17.420 17.798 hybrid contribution 1.798 0.737 -1.098 2.232 sum 0.325 4.075 16.322 16.826 Atomic orbital electron populations 1.21710 0.94201 1.01510 1.01097 1.21462 0.95337 0.94747 0.89983 0.95739 1.19145 0.94830 0.94735 0.92352 1.21494 0.93311 1.34174 1.08281 0.92713 1.25891 1.03370 0.94811 0.95325 1.70094 1.37536 1.36611 1.12713 0.85527 0.79816 0.78794 0.77387 1.19855 1.20788 1.19016 1.60642 1.33928 1.32430 1.04208 1.20959 1.00729 0.92766 0.88708 1.21644 0.96270 1.00510 0.97453 1.22326 0.95388 1.00382 0.99394 1.21147 0.99190 1.00624 0.94995 1.22843 0.86935 0.99216 0.93317 1.88092 1.49069 1.36716 1.58109 1.21325 0.92518 0.92132 0.91196 0.92838 0.93190 0.91707 0.98522 0.98521 0.92785 0.84046 0.89735 0.95754 0.88092 0.90488 0.87898 0.86755 0.91576 0.90305 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 9.41 71.98 0.68 -3.78 16 2 C 0.09 3.95 2.59 44.91 0.12 4.06 16 3 H 0.02 1.04 7.80 -2.39 -0.02 1.03 16 4 C 0.03 1.42 4.57 29.85 0.14 1.55 16 5 C -0.53 -30.02 8.12 25.60 0.21 -29.81 16 6 H 0.05 2.96 7.49 -2.91 -0.02 2.94 16 7 C 0.00 0.25 5.46 84.65 0.46 0.71 16 8 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 9 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 13 N -0.68 -26.36 6.30 -495.61 -3.12 -29.48 16 14 C 0.10 3.02 5.54 85.56 0.47 3.49 16 15 C -0.16 -4.44 5.44 -15.58 -0.08 -4.53 16 16 C -0.16 -4.16 9.53 26.60 0.25 -3.91 16 17 C -0.12 -2.56 6.36 29.79 0.19 -2.37 16 18 C 0.05 1.03 6.89 72.03 0.50 1.53 16 19 O -0.40 -10.72 10.84 -148.98 -1.62 -12.33 16 20 C 0.10 2.67 6.76 71.09 0.48 3.15 16 21 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 23 H 0.06 1.90 7.45 -2.39 -0.02 1.88 16 24 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 25 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 27 H 0.34 14.91 7.20 -89.69 -0.65 14.27 16 28 H 0.08 2.34 7.42 -2.39 -0.02 2.32 16 29 H 0.02 0.78 7.77 -2.39 -0.02 0.77 16 30 H 0.10 2.82 7.83 -2.91 -0.02 2.80 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -64.00 294.61 1.38 -62.62 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.39 Total: 19.11 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 3.41 Total: -29.90 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -2.84 Total: -85.90 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -1.62 Total: -12.33 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -64.00 1.38 -62.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.496 kcal (2) G-P(sol) polarization free energy of solvation -64.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds