Wall clock time and date at job start Mon Mar 30 2020 02:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47032 * 2 1 4 4 C 1.53001 * 109.46539 * 239.99760 * 2 1 3 5 5 C 1.50709 * 109.46928 * 176.87254 * 4 2 1 6 6 H 1.07997 * 119.99629 * 354.96388 * 5 4 2 7 7 C 1.37876 * 119.99969 * 174.96103 * 5 4 2 8 8 N 1.31511 * 119.99873 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99641 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47447 * 60.00222 * 9 7 5 11 11 H 1.48499 * 109.47291 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47308 * 300.00125 * 9 7 5 13 13 N 1.46896 * 109.47130 * 120.00205 * 2 1 3 14 14 C 1.46844 * 111.00181 * 290.14063 * 13 2 1 15 15 C 1.53029 * 109.52782 * 185.84035 * 14 13 2 16 16 C 1.53121 * 109.27871 * 300.81804 * 15 14 13 17 17 C 1.53124 * 109.15771 * 57.65522 * 16 15 14 18 18 H 1.08997 * 109.50246 * 62.32516 * 17 16 15 19 19 C 1.50699 * 109.50017 * 182.40622 * 17 16 15 20 20 O 1.20764 * 120.00055 * 239.99440 * 19 17 16 21 21 C 1.46856 * 111.00096 * 54.34746 * 13 2 1 22 22 H 1.09000 * 109.47032 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46815 * 299.99961 * 1 2 3 24 24 H 1.09002 * 109.46901 * 59.99676 * 1 2 3 25 25 H 1.08998 * 109.47440 * 296.87161 * 4 2 1 26 26 H 1.08998 * 109.47418 * 56.87853 * 4 2 1 27 27 H 0.97007 * 119.99297 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.46178 * 305.85870 * 14 13 2 29 29 H 1.09004 * 109.46461 * 65.83158 * 14 13 2 30 30 H 1.09004 * 109.50643 * 60.75966 * 15 14 13 31 31 H 1.09007 * 109.50686 * 180.83956 * 15 14 13 32 32 H 1.09005 * 109.52610 * 177.55715 * 16 15 14 33 33 H 1.08997 * 109.52355 * 297.74881 * 16 15 14 34 34 H 1.08002 * 120.00462 * 59.99998 * 19 17 16 35 35 H 1.08999 * 109.46406 * 294.17697 * 21 13 2 36 36 H 1.09002 * 109.45921 * 54.14795 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5450 -0.6546 -1.2887 6 1 4.0796 -0.0800 -0.5469 7 6 4.2394 -1.3272 -2.2718 8 7 3.5882 -2.0266 -3.1754 9 14 6.1049 -1.2450 -2.3202 10 1 6.6574 -1.7899 -1.0541 11 1 6.6062 -2.0469 -3.4652 12 1 6.5342 0.1675 -2.4803 13 7 2.0197 -0.6925 1.1994 14 6 1.7501 0.0953 2.4089 15 6 2.3995 -0.5836 3.6169 16 6 1.8308 -1.9971 3.7687 17 6 2.0821 -2.7812 2.4777 18 1 3.1553 -2.8721 2.3102 19 6 1.4733 -4.1546 2.5966 20 8 2.1723 -5.1351 2.5044 21 6 1.4418 -2.0386 1.3027 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.7231 -1.7639 -1.2216 26 1 1.6316 -0.2409 -2.1384 27 1 4.0768 -2.4995 -3.8673 28 1 2.1633 1.0968 2.2896 29 1 0.6736 0.1630 2.5658 30 1 3.4778 -0.6393 3.4670 31 1 2.1866 -0.0065 4.5168 32 1 2.3220 -2.5000 4.6017 33 1 0.7588 -1.9401 3.9574 34 1 0.4118 -4.2622 2.7643 35 1 0.3667 -1.9608 1.4647 36 1 1.6311 -2.5869 0.3799 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695831789.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:05 Heat of formation + Delta-G solvation = -66.707737 kcal Electronic energy + Delta-G solvation = -16286.443991 eV Core-core repulsion = 13769.293599 eV Total energy + Delta-G solvation = -2517.150393 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.85967 -39.52641 -36.30328 -34.49076 -32.30493 -31.06678 -29.12259 -25.69416 -25.53376 -24.66555 -22.16380 -21.21618 -20.14024 -18.35835 -17.57599 -16.68207 -16.46192 -15.97158 -15.81887 -15.37800 -15.09378 -14.74780 -14.53704 -13.98509 -13.72669 -13.58850 -13.39086 -12.98152 -12.77627 -12.55906 -12.43005 -12.24319 -11.93881 -11.69241 -11.56180 -11.41626 -11.09678 -10.84448 -10.50245 -10.41274 -8.83075 -8.10975 -6.14723 1.00751 1.38686 1.41860 1.48590 2.45699 3.05439 3.24737 3.51146 3.87919 3.93590 4.05234 4.21510 4.37903 4.41431 4.49160 4.57286 4.61829 4.72289 4.85030 4.88848 4.95568 5.07663 5.11910 5.22117 5.24586 5.27530 5.31526 5.49966 5.53410 5.71933 5.89518 6.33396 6.43327 6.50395 6.60258 6.99006 7.50651 9.00647 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.009279 C = 0.008118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.443950 B = 3016.742066 C = 3448.294984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 H 0.065 0.935 4 C 0.034 3.966 5 C -0.496 4.496 6 H 0.055 0.945 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.952 3.048 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.267 1.267 13 N -0.537 5.537 14 C 0.051 3.949 15 C -0.111 4.111 16 C -0.097 4.097 17 C -0.155 4.155 18 H 0.061 0.939 19 C 0.364 3.636 20 O -0.510 6.510 21 C 0.076 3.924 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.055 0.945 25 H -0.003 1.003 26 H -0.010 1.010 27 H 0.257 0.743 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.145 0.855 35 H 0.061 0.939 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.206 3.041 15.015 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 H 0.083 0.917 4 C -0.003 4.003 5 C -0.535 4.535 6 H 0.074 0.926 7 C -0.201 4.201 8 N -0.582 5.582 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.192 1.192 13 N -0.261 5.261 14 C -0.076 4.076 15 C -0.149 4.149 16 C -0.135 4.135 17 C -0.175 4.175 18 H 0.080 0.920 19 C 0.222 3.778 20 O -0.384 6.384 21 C -0.052 4.052 22 H 0.072 0.928 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.016 0.984 26 H 0.008 0.992 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.161 0.839 35 H 0.078 0.922 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.277 2.378 14.779 16.644 hybrid contribution 0.438 -0.041 -0.805 0.917 sum -6.838 2.337 13.974 15.732 Atomic orbital electron populations 1.22387 0.96770 1.01837 1.02234 1.21592 0.92378 0.97016 0.90275 0.91690 1.19084 0.95009 0.94463 0.91794 1.21444 0.93216 1.28437 1.10363 0.92640 1.25815 1.02649 0.95785 0.95881 1.70077 1.36913 1.34164 1.17024 0.85703 0.81062 0.78295 0.77159 1.20208 1.21379 1.19193 1.61792 1.59889 1.02109 1.02315 1.22190 0.98949 0.96878 0.89582 1.21556 0.99978 0.95762 0.97586 1.21457 1.03036 0.95017 0.93953 1.22165 1.01325 0.95811 0.98165 0.92046 1.26596 0.96088 0.88025 0.67050 1.90392 1.67590 1.43204 1.37171 1.21739 0.96696 0.90366 0.96419 0.92784 0.90938 0.92633 0.98429 0.99191 0.93395 0.91429 0.93318 0.93242 0.88567 0.90633 0.88673 0.83945 0.92158 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.30 8.45 71.98 0.61 -4.69 16 2 C 0.10 3.72 2.28 44.92 0.10 3.83 16 3 H 0.06 2.57 7.99 -2.39 -0.02 2.55 16 4 C 0.03 1.74 4.34 29.85 0.13 1.87 16 5 C -0.50 -28.49 8.79 25.60 0.22 -28.27 16 6 H 0.06 3.15 7.75 -2.91 -0.02 3.13 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 8 N -0.94 -58.78 13.29 21.45 0.28 -58.49 16 9 Si 0.95 46.80 29.54 68.60 2.03 48.82 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 N -0.54 -19.05 4.27 -871.11 -3.72 -22.77 16 14 C 0.05 1.33 5.13 86.32 0.44 1.77 16 15 C -0.11 -2.41 6.09 30.64 0.19 -2.22 16 16 C -0.10 -1.91 5.27 30.68 0.16 -1.75 16 17 C -0.15 -4.37 2.77 -11.49 -0.03 -4.40 16 18 H 0.06 2.23 8.12 -2.39 -0.02 2.21 16 19 C 0.36 9.37 10.45 71.24 0.74 10.11 16 20 O -0.51 -18.23 17.90 -1.46 -0.03 -18.26 16 21 C 0.08 2.48 3.81 86.32 0.33 2.81 16 22 H 0.05 1.63 6.46 -2.39 -0.02 1.62 16 23 H 0.07 1.77 6.81 -2.39 -0.02 1.76 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.00 -0.14 6.29 -2.39 -0.02 -0.16 16 26 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 27 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 28 H 0.07 1.78 8.02 -2.39 -0.02 1.76 16 29 H 0.05 1.06 6.87 -2.38 -0.02 1.04 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.06 1.59 6.58 -2.39 -0.02 1.57 16 36 H 0.04 1.83 6.15 -2.39 -0.01 1.81 16 Total: -1.00 -71.70 285.40 2.96 -68.74 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: 1.04 Total: 2.76 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 3.36 Total: -20.80 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -3.43 Total: -81.26 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.03 Total: -18.26 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -71.70 2.96 -68.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695831789.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.029 kcal (2) G-P(sol) polarization free energy of solvation -71.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds