Wall clock time and date at job start Mon Mar 30 2020 02:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47008 * 2 1 4 4 C 1.53001 * 109.46868 * 239.99837 * 2 1 3 5 5 C 1.50702 * 109.47110 * 65.66672 * 4 2 1 6 6 H 1.07990 * 120.00182 * 5.06920 * 5 4 2 7 7 C 1.37875 * 119.99902 * 185.07515 * 5 4 2 8 8 N 1.31525 * 119.99808 * 359.97438 * 7 5 4 9 9 Si 1.86790 * 120.00188 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47263 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47248 * 120.00044 * 9 7 5 12 12 H 1.48497 * 109.47777 * 239.99987 * 9 7 5 13 13 N 1.46904 * 109.46818 * 119.99984 * 2 1 3 14 14 C 1.46848 * 110.99583 * 190.78771 * 13 2 1 15 15 C 1.53037 * 109.52272 * 174.15976 * 14 13 2 16 16 C 1.53118 * 109.27691 * 59.17899 * 15 14 13 17 17 C 1.53120 * 109.16113 * 302.34564 * 16 15 14 18 18 H 1.08999 * 109.50290 * 297.71466 * 17 16 15 19 19 C 1.50705 * 109.50194 * 177.63667 * 17 16 15 20 20 O 1.20755 * 120.00380 * 119.99992 * 19 17 16 21 21 C 1.46842 * 111.00202 * 66.58266 * 13 2 1 22 22 H 1.09005 * 109.47557 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47681 * 300.00076 * 1 2 3 24 24 H 1.09008 * 109.47167 * 60.00361 * 1 2 3 25 25 H 1.08995 * 109.47460 * 305.65679 * 4 2 1 26 26 H 1.09007 * 109.46685 * 185.65905 * 4 2 1 27 27 H 0.97002 * 119.99992 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.46647 * 294.17773 * 14 13 2 29 29 H 1.09004 * 109.46285 * 54.14227 * 14 13 2 30 30 H 1.09007 * 109.50500 * 179.12367 * 15 14 13 31 31 H 1.09002 * 109.50080 * 299.23755 * 15 14 13 32 32 H 1.08997 * 109.51950 * 62.25454 * 16 15 14 33 33 H 1.08999 * 109.52293 * 182.37984 * 16 15 14 34 34 H 1.08003 * 119.99562 * 299.99941 * 19 17 16 35 35 H 1.09010 * 109.45940 * 305.85126 * 21 13 2 36 36 H 1.08991 * 109.46397 * 65.81709 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6554 0.0655 -2.4757 6 1 1.1752 1.0271 -2.3718 7 6 1.9165 -0.4426 -3.7306 8 7 2.5016 -1.6137 -3.8571 9 14 1.4392 0.5321 -5.2508 10 1 0.8006 1.8084 -4.8402 11 1 2.6540 0.8230 -6.0539 12 1 0.4842 -0.2596 -6.0670 13 7 2.0196 -0.6925 1.1995 14 6 3.4647 -0.4939 1.3687 15 6 3.9124 -1.1035 2.6991 16 6 3.5792 -2.5979 2.7080 17 6 2.0757 -2.7789 2.4816 18 1 1.5258 -2.3114 3.2984 19 6 1.7479 -4.2491 2.4310 20 8 0.9774 -4.7238 3.2305 21 6 1.6813 -2.1208 1.1575 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 1.5963 -1.7155 -1.3013 26 1 3.1253 -0.8099 -1.2000 27 1 2.6857 -1.9711 -4.7400 28 1 3.9963 -0.9787 0.5499 29 1 3.6876 0.5731 1.3648 30 1 4.9877 -0.9696 2.8172 31 1 3.3914 -0.6095 3.5193 32 1 4.1303 -3.0987 1.9121 33 1 3.8579 -3.0276 3.6702 34 1 2.2022 -4.8780 1.6796 35 1 0.6087 -2.2355 1.0002 36 1 2.2212 -2.5980 0.3397 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695831790.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:07 Heat of formation + Delta-G solvation = -51.392635 kcal Electronic energy + Delta-G solvation = -16106.731172 eV Core-core repulsion = 13590.244892 eV Total energy + Delta-G solvation = -2516.486280 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.67745 -38.26344 -34.92639 -32.56433 -31.17190 -29.74345 -27.02872 -24.46813 -24.24801 -22.96663 -21.09682 -20.07970 -18.65496 -16.74223 -15.98397 -15.39553 -14.85556 -14.66528 -14.49546 -14.16250 -13.56264 -13.35457 -13.24000 -12.59667 -12.41579 -12.12410 -11.78428 -11.22374 -11.12541 -10.95900 -10.86827 -10.69089 -10.54915 -10.36536 -10.14931 -9.88180 -9.61517 -9.37544 -9.11597 -8.40383 -7.53745 -6.05878 -4.07692 2.01315 3.27084 3.35299 3.38917 4.22293 4.41391 4.59384 4.91890 4.99490 5.09428 5.29991 5.33782 5.58580 5.71686 5.75360 5.83755 5.92199 6.00223 6.06756 6.19877 6.22295 6.29995 6.35860 6.40639 6.51872 6.78651 6.90319 7.00375 7.40192 7.49105 7.52044 7.67493 7.82275 7.95299 8.38389 8.98591 9.56374 11.05232 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033711 B = 0.006824 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.392188 B = 4101.888199 C = 4274.667065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.080 3.920 3 H 0.069 0.931 4 C -0.002 4.002 5 C -0.514 4.514 6 H 0.057 0.943 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.535 5.535 14 C 0.052 3.948 15 C -0.112 4.112 16 C -0.108 4.108 17 C -0.154 4.154 18 H 0.096 0.904 19 C 0.355 3.645 20 O -0.468 6.468 21 C 0.064 3.936 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.065 0.935 25 H 0.023 0.977 26 H 0.012 0.988 27 H 0.259 0.741 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -1.089 10.489 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.027 4.027 3 H 0.088 0.912 4 C -0.040 4.040 5 C -0.553 4.553 6 H 0.075 0.925 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.259 5.259 14 C -0.077 4.077 15 C -0.150 4.150 16 C -0.146 4.146 17 C -0.173 4.173 18 H 0.114 0.886 19 C 0.211 3.789 20 O -0.339 6.339 21 C -0.065 4.065 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.084 0.916 25 H 0.041 0.959 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.505 -1.249 11.209 11.379 hybrid contribution 0.308 0.162 -1.826 1.858 sum 1.813 -1.087 9.384 9.619 Atomic orbital electron populations 1.21704 0.95302 1.00972 1.00566 1.21856 0.95094 0.97542 0.88196 0.91233 1.19693 0.96077 0.96430 0.91845 1.21191 1.38911 1.04420 0.90741 0.92476 1.25012 0.95242 0.94990 0.99158 1.69969 1.42606 1.17702 1.23208 0.86565 0.78210 0.80237 0.83186 1.19697 1.21079 1.21043 1.62256 1.13406 1.09976 1.40279 1.22051 0.88910 1.00596 0.96106 1.21552 1.00274 0.94685 0.98494 1.21462 0.93645 0.97795 1.01649 1.22191 0.98552 0.95112 1.01482 0.88613 1.26104 0.77575 0.91813 0.83431 1.90366 1.28518 1.77122 1.37916 1.21885 1.01370 0.89448 0.93754 0.93666 0.94170 0.91576 0.95892 0.96976 0.93100 0.93957 0.91126 0.91649 0.91415 0.91356 0.91991 0.88966 0.90554 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.96 37.16 0.33 -2.07 16 2 C 0.08 1.60 2.33 -67.71 -0.16 1.44 16 3 H 0.07 1.42 7.97 -51.93 -0.41 1.00 16 4 C 0.00 -0.06 3.58 -27.88 -0.10 -0.16 16 5 C -0.51 -13.88 8.32 -34.44 -0.29 -14.17 16 6 H 0.06 1.51 7.30 -52.49 -0.38 1.13 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.54 -9.17 4.60 -226.70 -1.04 -10.21 16 14 C 0.05 0.80 5.15 -3.83 -0.02 0.78 16 15 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 16 C -0.11 -1.26 5.27 -26.61 -0.14 -1.40 16 17 C -0.15 -2.04 2.77 -91.69 -0.25 -2.29 16 18 H 0.10 1.35 8.12 -51.93 -0.42 0.93 16 19 C 0.36 4.58 10.45 36.01 0.38 4.95 16 20 O -0.47 -7.56 17.90 6.00 0.11 -7.45 16 21 C 0.06 1.03 3.80 -3.84 -0.01 1.02 16 22 H 0.04 0.84 6.45 -51.93 -0.34 0.50 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 1.31 7.11 -51.92 -0.37 0.94 16 25 H 0.02 0.60 6.80 -51.93 -0.35 0.24 16 26 H 0.01 0.31 6.63 -51.92 -0.34 -0.03 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.04 0.73 6.79 -51.93 -0.35 0.38 16 29 H 0.07 1.08 8.01 -51.93 -0.42 0.66 16 30 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.08 1.28 6.25 -51.92 -0.32 0.95 16 36 H 0.05 0.91 6.70 -51.93 -0.35 0.56 16 LS Contribution 284.01 15.07 4.28 4.28 Total: -1.00 -29.81 284.01 -7.19 -37.00 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.73 Total: -2.51 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -0.52 Total: -11.94 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: -0.31 Total: -35.56 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.11 Total: -7.45 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.81 -7.19 -37.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695831790.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.393 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds