Wall clock time and date at job start Mon Mar 30 2020 02:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47008 * 2 1 4 4 C 1.53001 * 109.46868 * 239.99837 * 2 1 3 5 5 C 1.50702 * 109.47110 * 65.66672 * 4 2 1 6 6 H 1.07990 * 120.00182 * 5.06920 * 5 4 2 7 7 C 1.37875 * 119.99902 * 185.07515 * 5 4 2 8 8 N 1.31525 * 119.99808 * 359.97438 * 7 5 4 9 9 Si 1.86790 * 120.00188 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47263 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47248 * 120.00044 * 9 7 5 12 12 H 1.48497 * 109.47777 * 239.99987 * 9 7 5 13 13 N 1.46904 * 109.46818 * 119.99984 * 2 1 3 14 14 C 1.46848 * 110.99583 * 190.78771 * 13 2 1 15 15 C 1.53037 * 109.52272 * 174.15976 * 14 13 2 16 16 C 1.53118 * 109.27691 * 59.17899 * 15 14 13 17 17 C 1.53120 * 109.16113 * 302.34564 * 16 15 14 18 18 H 1.08999 * 109.50290 * 297.71466 * 17 16 15 19 19 C 1.50705 * 109.50194 * 177.63667 * 17 16 15 20 20 O 1.20755 * 120.00380 * 119.99992 * 19 17 16 21 21 C 1.46842 * 111.00202 * 66.58266 * 13 2 1 22 22 H 1.09005 * 109.47557 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47681 * 300.00076 * 1 2 3 24 24 H 1.09008 * 109.47167 * 60.00361 * 1 2 3 25 25 H 1.08995 * 109.47460 * 305.65679 * 4 2 1 26 26 H 1.09007 * 109.46685 * 185.65905 * 4 2 1 27 27 H 0.97002 * 119.99992 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.46647 * 294.17773 * 14 13 2 29 29 H 1.09004 * 109.46285 * 54.14227 * 14 13 2 30 30 H 1.09007 * 109.50500 * 179.12367 * 15 14 13 31 31 H 1.09002 * 109.50080 * 299.23755 * 15 14 13 32 32 H 1.08997 * 109.51950 * 62.25454 * 16 15 14 33 33 H 1.08999 * 109.52293 * 182.37984 * 16 15 14 34 34 H 1.08003 * 119.99562 * 299.99941 * 19 17 16 35 35 H 1.09010 * 109.45940 * 305.85126 * 21 13 2 36 36 H 1.08991 * 109.46397 * 65.81709 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6554 0.0655 -2.4757 6 1 1.1752 1.0271 -2.3718 7 6 1.9165 -0.4426 -3.7306 8 7 2.5016 -1.6137 -3.8571 9 14 1.4392 0.5321 -5.2508 10 1 0.8006 1.8084 -4.8402 11 1 2.6540 0.8230 -6.0539 12 1 0.4842 -0.2596 -6.0670 13 7 2.0196 -0.6925 1.1995 14 6 3.4647 -0.4939 1.3687 15 6 3.9124 -1.1035 2.6991 16 6 3.5792 -2.5979 2.7080 17 6 2.0757 -2.7789 2.4816 18 1 1.5258 -2.3114 3.2984 19 6 1.7479 -4.2491 2.4310 20 8 0.9774 -4.7238 3.2305 21 6 1.6813 -2.1208 1.1575 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 1.5963 -1.7155 -1.3013 26 1 3.1253 -0.8099 -1.2000 27 1 2.6857 -1.9711 -4.7400 28 1 3.9963 -0.9787 0.5499 29 1 3.6876 0.5731 1.3648 30 1 4.9877 -0.9696 2.8172 31 1 3.3914 -0.6095 3.5193 32 1 4.1303 -3.0987 1.9121 33 1 3.8579 -3.0276 3.6702 34 1 2.2022 -4.8780 1.6796 35 1 0.6087 -2.2355 1.0002 36 1 2.2212 -2.5980 0.3397 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695831790.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:07 Heat of formation + Delta-G solvation = -70.364423 kcal Electronic energy + Delta-G solvation = -16107.553850 eV Core-core repulsion = 13590.244892 eV Total energy + Delta-G solvation = -2517.308959 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.90018 -39.55407 -36.40431 -34.50204 -32.38579 -31.25076 -28.89416 -25.86229 -25.52358 -24.74838 -22.23315 -21.30435 -20.15392 -18.62970 -17.35508 -16.75203 -16.44447 -16.01634 -15.88392 -15.39001 -15.04723 -14.87296 -14.59747 -14.04249 -13.85985 -13.58031 -13.48535 -12.85816 -12.70473 -12.58459 -12.38925 -12.25463 -11.82285 -11.76565 -11.68413 -11.44586 -11.24077 -11.04320 -10.53272 -10.47781 -9.06288 -8.18542 -6.27881 0.94730 1.38770 1.40529 1.52350 2.40743 2.99673 3.14713 3.45392 3.82438 3.89781 4.01210 4.18853 4.35819 4.43058 4.52676 4.57839 4.68102 4.72365 4.82934 4.89418 4.95797 5.02170 5.12645 5.17398 5.21895 5.24786 5.41478 5.44738 5.52735 5.64102 5.77451 6.07738 6.31747 6.35817 6.42401 6.88436 7.40361 8.92311 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033711 B = 0.006824 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.392188 B = 4101.888199 C = 4274.667065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.088 3.912 3 H 0.066 0.934 4 C 0.011 3.989 5 C -0.529 4.529 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.931 5.931 9 Si 0.957 3.043 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.529 5.529 14 C 0.048 3.952 15 C -0.104 4.104 16 C -0.106 4.106 17 C -0.145 4.145 18 H 0.092 0.908 19 C 0.365 3.635 20 O -0.500 6.500 21 C 0.066 3.934 22 H 0.041 0.959 23 H 0.063 0.937 24 H 0.052 0.948 25 H -0.001 1.001 26 H -0.013 1.013 27 H 0.261 0.739 28 H 0.018 0.982 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.067 0.933 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.241 -0.596 11.300 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.020 4.020 3 H 0.084 0.916 4 C -0.027 4.027 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.783 3.217 10 H -0.186 1.186 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.253 5.253 14 C -0.080 4.080 15 C -0.142 4.142 16 C -0.144 4.144 17 C -0.165 4.165 18 H 0.110 0.890 19 C 0.223 3.777 20 O -0.373 6.373 21 C -0.062 4.062 22 H 0.060 0.940 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.017 0.983 26 H 0.005 0.995 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.141 0.859 35 H 0.085 0.915 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.644 -0.746 12.033 12.167 hybrid contribution 0.296 0.011 -2.077 2.098 sum 1.941 -0.735 9.955 10.169 Atomic orbital electron populations 1.21618 0.94252 1.00949 1.01044 1.21659 0.95930 0.96993 0.87417 0.91571 1.19523 0.94272 0.95434 0.93493 1.21604 1.38506 1.04724 0.91910 0.92174 1.25876 0.95253 0.95974 1.02449 1.70092 1.43822 1.19311 1.23982 0.85509 0.77934 0.79074 0.79220 1.18611 1.20690 1.20676 1.62308 1.14561 1.10409 1.37999 1.22164 0.87532 1.00876 0.97435 1.21524 1.01689 0.94747 0.96210 1.21496 0.92126 0.97606 1.03124 1.22103 0.99876 0.95237 0.99244 0.88992 1.26399 0.76495 0.91715 0.83069 1.90369 1.29997 1.77554 1.39346 1.21838 1.00550 0.88896 0.94945 0.93951 0.91831 0.92851 0.98309 0.99475 0.93004 0.96352 0.90997 0.89384 0.90756 0.91053 0.89521 0.85945 0.91485 0.95112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 8.96 71.98 0.64 -3.85 16 2 C 0.09 3.52 2.33 44.91 0.10 3.63 16 3 H 0.07 2.69 7.97 -2.39 -0.02 2.67 16 4 C 0.01 0.55 3.58 29.85 0.11 0.66 16 5 C -0.53 -28.94 8.32 25.60 0.21 -28.72 16 6 H 0.06 3.18 7.30 -2.92 -0.02 3.16 16 7 C 0.00 0.12 5.46 84.65 0.46 0.59 16 8 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 9 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 10 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.53 -17.92 4.60 -871.13 -4.01 -21.93 16 14 C 0.05 1.46 5.15 86.33 0.44 1.91 16 15 C -0.10 -2.30 6.09 30.65 0.19 -2.12 16 16 C -0.11 -2.21 5.27 30.67 0.16 -2.05 16 17 C -0.14 -3.62 2.77 -11.49 -0.03 -3.66 16 18 H 0.09 2.42 8.12 -2.39 -0.02 2.40 16 19 C 0.37 8.83 10.45 71.24 0.74 9.58 16 20 O -0.50 -15.49 17.90 -1.44 -0.03 -15.52 16 21 C 0.07 2.13 3.80 86.33 0.33 2.45 16 22 H 0.04 1.57 6.45 -2.38 -0.02 1.55 16 23 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 24 H 0.05 2.09 7.11 -2.38 -0.02 2.07 16 25 H 0.00 -0.08 6.80 -2.39 -0.02 -0.09 16 26 H -0.01 -0.71 6.63 -2.38 -0.02 -0.72 16 27 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.02 0.65 6.79 -2.39 -0.02 0.63 16 29 H 0.07 2.15 8.01 -2.38 -0.02 2.13 16 30 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.12 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.07 2.26 6.25 -2.38 -0.01 2.24 16 36 H 0.03 1.11 6.70 -2.39 -0.02 1.10 16 Total: -1.00 -64.15 284.01 2.68 -61.47 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 1.04 Total: 6.92 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 3.36 Total: -21.58 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -3.72 Total: -76.88 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.03 Total: -15.52 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -64.15 2.68 -61.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695831790.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.899 kcal (2) G-P(sol) polarization free energy of solvation -64.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds