Wall clock time and date at job start Mon Mar 30 2020 02:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46347 * 2 1 4 4 C 1.52993 * 109.47424 * 120.00107 * 2 1 3 5 5 C 1.50704 * 109.47307 * 183.69270 * 4 2 1 6 6 H 1.08000 * 119.99654 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00103 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99947 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99774 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46866 * 269.99960 * 9 7 5 11 11 H 1.48496 * 109.47135 * 30.00012 * 9 7 5 12 12 H 1.48498 * 109.47196 * 150.00278 * 9 7 5 13 13 N 1.46896 * 109.47053 * 240.00950 * 2 1 3 14 14 C 1.46860 * 110.99491 * 306.69955 * 13 2 1 15 15 C 1.53037 * 109.52075 * 185.84410 * 14 13 2 16 16 C 1.53122 * 109.27779 * 300.81785 * 15 14 13 17 17 C 1.53127 * 109.15911 * 57.66023 * 16 15 14 18 18 C 1.46839 * 111.00534 * 70.90942 * 13 2 1 19 19 H 1.08996 * 109.46421 * 294.17835 * 18 13 2 20 20 C 1.50700 * 109.46366 * 54.14815 * 18 13 2 21 21 O 1.20760 * 119.99522 * 5.89904 * 20 18 13 22 22 H 1.09007 * 109.46761 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47256 * 299.99430 * 1 2 3 24 24 H 1.08993 * 109.47717 * 59.99699 * 1 2 3 25 25 H 1.09001 * 109.47249 * 63.68978 * 4 2 1 26 26 H 1.09002 * 109.47240 * 303.68924 * 4 2 1 27 27 H 0.97007 * 119.99439 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.46241 * 305.85589 * 14 13 2 29 29 H 1.08995 * 109.46047 * 65.83039 * 14 13 2 30 30 H 1.08997 * 109.50431 * 180.88496 * 15 14 13 31 31 H 1.08995 * 109.53647 * 60.77971 * 15 14 13 32 32 H 1.08999 * 109.52557 * 297.75762 * 16 15 14 33 33 H 1.09001 * 109.52207 * 177.55776 * 16 15 14 34 34 H 1.09001 * 109.50144 * 182.40498 * 17 16 15 35 35 H 1.08995 * 109.50531 * 62.28088 * 17 16 15 36 36 H 1.07993 * 120.00184 * 185.90198 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5443 -0.6425 1.2957 6 1 4.0826 -0.1289 0.5128 7 6 4.2333 -1.2260 2.3377 8 7 3.5777 -1.8509 3.2913 9 14 6.0979 -1.1289 2.3950 10 1 6.6764 -2.2980 1.6853 11 1 6.5488 0.1231 1.7360 12 1 6.5507 -1.1347 3.8093 13 7 2.0196 -0.6923 -1.1995 14 6 1.4225 -2.0289 -1.3162 15 6 2.0618 -2.7739 -2.4903 16 6 1.8335 -1.9782 -3.7784 17 6 2.4221 -0.5743 -3.6130 18 6 1.7724 0.1069 -2.4063 19 1 0.6984 0.1919 -2.5719 20 6 2.3630 1.4818 -2.2277 21 8 3.0223 1.7331 -1.2477 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.7318 -1.7662 1.2167 26 1 1.6238 -0.2470 2.1380 27 1 4.0625 -2.2617 4.0242 28 1 1.5956 -2.5857 -0.3953 29 1 0.3502 -1.9339 -1.4870 30 1 1.6074 -3.7599 -2.5864 31 1 3.1320 -2.8819 -2.3141 32 1 0.7641 -1.9038 -3.9760 33 1 2.3244 -2.4831 -4.6104 34 1 2.2251 0.0111 -4.5111 35 1 3.4979 -0.6471 -3.4540 36 1 2.1966 2.2424 -2.9761 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695832600.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:03 Heat of formation + Delta-G solvation = -52.695303 kcal Electronic energy + Delta-G solvation = -16690.331274 eV Core-core repulsion = 14173.788506 eV Total energy + Delta-G solvation = -2516.542768 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.22247 -38.79753 -36.30166 -34.42744 -32.26141 -31.03283 -29.13631 -26.34061 -25.05048 -24.66311 -21.98341 -21.21408 -19.96582 -18.33767 -17.37864 -17.00904 -16.55723 -15.79238 -15.64584 -15.26487 -14.97703 -14.48313 -14.28471 -14.17658 -13.81371 -13.58144 -13.33461 -12.99652 -12.77637 -12.59847 -12.41627 -12.11607 -11.91932 -11.64525 -11.49542 -11.33581 -11.07120 -10.83884 -10.49564 -9.95777 -8.80674 -8.09365 -6.11822 1.23570 1.36276 1.38064 1.50235 2.46655 3.04103 3.25160 3.49923 3.96537 4.12109 4.16728 4.24213 4.40982 4.45284 4.47299 4.53643 4.66911 4.71929 4.88340 4.97070 5.01581 5.12006 5.16567 5.21302 5.27124 5.28377 5.38614 5.51079 5.58430 5.74876 5.91993 6.37510 6.50423 6.55773 6.84062 7.03026 7.52692 9.03010 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025986 B = 0.009493 C = 0.009424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.264807 B = 2948.693315 C = 2970.545992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.077 3.923 3 H 0.082 0.918 4 C 0.041 3.959 5 C -0.485 4.485 6 H 0.053 0.947 7 C -0.010 4.010 8 N -0.943 5.943 9 Si 0.955 3.045 10 H -0.275 1.275 11 H -0.274 1.274 12 H -0.283 1.283 13 N -0.522 5.522 14 C 0.059 3.941 15 C -0.116 4.116 16 C -0.108 4.108 17 C -0.097 4.097 18 C 0.005 3.995 19 H 0.086 0.914 20 C 0.335 3.665 21 O -0.477 6.477 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.070 0.930 25 H -0.007 1.007 26 H -0.018 1.018 27 H 0.257 0.743 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.643 2.743 -17.746 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.031 4.031 3 H 0.100 0.900 4 C 0.003 3.997 5 C -0.523 4.523 6 H 0.072 0.928 7 C -0.205 4.205 8 N -0.586 5.586 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.198 1.198 12 H -0.209 1.209 13 N -0.247 5.247 14 C -0.068 4.068 15 C -0.154 4.154 16 C -0.145 4.145 17 C -0.135 4.135 18 C -0.105 4.105 19 H 0.104 0.896 20 C 0.192 3.808 21 O -0.348 6.348 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.011 0.989 26 H 0.001 0.999 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.734 2.737 -17.017 18.165 hybrid contribution 0.089 -0.244 0.872 0.910 sum -5.645 2.493 -16.146 17.285 Atomic orbital electron populations 1.22428 0.97581 1.01586 1.01785 1.21934 0.91502 0.99072 0.90569 0.90008 1.18990 0.95247 0.93883 0.91535 1.21461 0.93157 1.31709 1.06004 0.92849 1.25849 1.02768 0.96039 0.95821 1.70101 1.36765 1.38920 1.12793 0.85598 0.81020 0.78373 0.76909 1.20126 1.19847 1.20857 1.61787 1.59540 1.02285 1.01058 1.22015 0.96052 0.90202 0.98569 1.21594 1.00372 0.98767 0.94692 1.21520 1.01713 0.94775 0.96519 1.21463 0.99624 0.96765 0.95649 1.22719 1.00533 0.94618 0.92583 0.89629 1.26798 0.75232 0.91665 0.87101 1.90447 1.30333 1.82534 1.31513 0.92954 0.93135 0.91158 0.98905 0.99938 0.93414 0.94056 0.94112 0.90637 0.93639 0.90521 0.89973 0.87219 0.93098 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.10 8.43 71.98 0.61 -5.49 16 2 C 0.08 3.36 1.82 44.91 0.08 3.45 16 3 H 0.08 3.85 4.88 -2.39 -0.01 3.84 16 4 C 0.04 2.28 4.37 29.85 0.13 2.41 16 5 C -0.48 -29.87 8.80 25.60 0.23 -29.64 16 6 H 0.05 3.38 7.74 -2.91 -0.02 3.35 16 7 C -0.01 -0.61 5.46 84.65 0.46 -0.14 16 8 N -0.94 -60.96 13.29 21.45 0.28 -60.67 16 9 Si 0.95 48.94 29.54 68.60 2.03 50.96 16 10 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.27 -13.84 7.11 99.48 0.71 -13.13 16 12 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 13 N -0.52 -19.92 3.93 -850.40 -3.34 -23.26 16 14 C 0.06 2.09 4.52 86.32 0.39 2.48 16 15 C -0.12 -3.28 6.09 30.65 0.19 -3.09 16 16 C -0.11 -2.13 6.00 30.68 0.18 -1.95 16 17 C -0.10 -2.02 5.36 30.65 0.16 -1.85 16 18 C 0.00 0.12 2.07 44.20 0.09 0.21 16 19 H 0.09 1.85 6.91 -2.39 -0.02 1.84 16 20 C 0.33 8.96 10.59 71.24 0.75 9.72 16 21 O -0.48 -19.15 14.54 -1.45 -0.02 -19.17 16 22 H 0.05 1.81 6.46 -2.38 -0.02 1.79 16 23 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 24 H 0.07 1.94 6.85 -2.39 -0.02 1.92 16 25 H -0.01 -0.44 6.31 -2.39 -0.02 -0.45 16 26 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 27 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 28 H 0.04 1.81 6.18 -2.39 -0.01 1.80 16 29 H 0.04 1.26 6.57 -2.39 -0.02 1.24 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -77.16 279.53 3.27 -73.89 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 1.04 Total: 2.16 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 3.28 Total: -23.91 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -3.06 Total: -83.94 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.02 Total: -19.17 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.03 Total: 50.96 kcal Total: -77.16 3.27 -73.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695832600.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.199 kcal (2) G-P(sol) polarization free energy of solvation -77.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds