Wall clock time and date at job start Mon Mar 30 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46992 * 2 1 4 4 C 1.53001 * 109.46927 * 239.99782 * 2 1 3 5 5 C 1.50700 * 109.47123 * 62.46595 * 4 2 1 6 6 H 1.07999 * 119.99928 * 5.59776 * 5 4 2 7 7 C 1.37882 * 119.99630 * 185.60055 * 5 4 2 8 8 N 1.31509 * 120.00358 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99613 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46754 * 90.00124 * 9 7 5 11 11 H 1.48498 * 109.47090 * 209.99915 * 9 7 5 12 12 H 1.48502 * 109.47479 * 330.00335 * 9 7 5 13 13 N 1.46897 * 109.47185 * 120.00037 * 2 1 3 14 14 C 1.46851 * 110.99948 * 300.59261 * 13 2 1 15 15 C 1.53033 * 109.52370 * 174.16379 * 14 13 2 16 16 C 1.53116 * 109.28428 * 59.17443 * 15 14 13 17 17 C 1.50696 * 109.52433 * 182.44194 * 16 15 14 18 18 O 1.20766 * 120.00087 * 239.99717 * 17 16 15 19 19 C 1.53121 * 109.15647 * 302.34671 * 16 15 14 20 20 C 1.46846 * 111.00257 * 176.37890 * 13 2 1 21 21 H 1.08997 * 109.46953 * 300.00009 * 1 2 3 22 22 H 1.09001 * 109.47125 * 60.00582 * 1 2 3 23 23 H 1.09004 * 109.46848 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47010 * 182.46388 * 4 2 1 25 25 H 1.08997 * 109.47518 * 302.45972 * 4 2 1 26 26 H 0.97001 * 120.00020 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.46348 * 54.14147 * 14 13 2 28 28 H 1.09000 * 109.44805 * 294.16918 * 14 13 2 29 29 H 1.08999 * 109.50425 * 299.22984 * 15 14 13 30 30 H 1.09002 * 109.50074 * 179.11477 * 15 14 13 31 31 H 1.09002 * 109.52186 * 62.24747 * 16 15 14 32 32 H 1.08001 * 120.00346 * 59.99980 * 17 16 15 33 33 H 1.09007 * 109.49788 * 177.59360 * 19 16 15 34 34 H 1.08998 * 109.50576 * 297.71097 * 19 16 15 35 35 H 1.09001 * 109.46204 * 305.85033 * 20 13 2 36 36 H 1.08993 * 109.45943 * 65.81948 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5882 0.0235 -2.4790 6 1 1.0748 0.9685 -2.3797 7 6 1.8302 -0.5016 -3.7307 8 7 2.4557 -1.6521 -3.8515 9 14 1.2695 0.4212 -5.2550 10 1 2.3484 1.3378 -5.7034 11 1 0.9630 -0.5492 -6.3364 12 1 0.0514 1.2088 -4.9368 13 7 2.0197 -0.6925 1.1994 14 6 1.5373 -0.0348 2.4206 15 6 1.9435 -0.8627 3.6419 16 6 3.4686 -0.9943 3.6790 17 6 3.8712 -1.8587 4.8459 18 8 4.5862 -1.4115 5.7103 19 6 3.9493 -1.6379 2.3755 20 6 3.4851 -0.7875 1.1909 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1291 -0.7597 -1.2274 25 1 1.6411 -1.7354 -1.2716 26 1 2.6256 -2.0217 -4.7321 27 1 0.4512 0.0487 2.3833 28 1 1.9758 0.9604 2.4943 29 1 1.4943 -1.8535 3.5757 30 1 1.5990 -0.3661 4.5490 31 1 3.9170 -0.0063 3.7845 32 1 3.5204 -2.8782 4.9092 33 1 5.0378 -1.6953 2.3779 34 1 3.5316 -2.6410 2.2893 35 1 3.8136 -1.2508 0.2605 36 1 3.9142 0.2112 1.2704 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695833060.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:57 Heat of formation + Delta-G solvation = -48.496503 kcal Electronic energy + Delta-G solvation = -15836.516383 eV Core-core repulsion = 13320.155689 eV Total energy + Delta-G solvation = -2516.360694 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.72613 -38.32969 -34.96950 -32.64504 -30.83684 -30.23853 -26.97334 -25.46245 -23.62552 -22.23747 -21.37743 -19.93832 -19.11598 -16.80969 -16.10596 -15.58317 -14.88596 -14.64468 -14.44872 -14.36997 -13.73707 -13.46006 -13.02368 -12.90825 -12.39923 -11.93739 -11.60608 -11.37209 -11.08088 -10.99509 -10.93692 -10.82494 -10.59939 -10.49478 -10.24981 -9.78286 -9.47258 -9.18554 -9.07071 -8.34065 -7.71791 -6.01126 -4.02549 1.87053 3.30741 3.37516 3.40151 4.18839 4.33412 4.50274 4.74729 4.87873 4.96464 5.34782 5.36434 5.56897 5.58902 5.70244 5.74274 5.85317 5.89376 5.92363 6.08539 6.16011 6.20328 6.32866 6.40396 6.46660 6.70689 6.92091 7.11614 7.26473 7.52633 7.60657 7.79869 7.85754 8.06358 8.42660 9.03609 9.60670 11.10245 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.054627 B = 0.005617 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.441789 B = 4983.725562 C = 5322.150693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.085 3.915 3 H 0.025 0.975 4 C 0.030 3.970 5 C -0.517 4.517 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.534 5.534 14 C 0.052 3.948 15 C -0.102 4.102 16 C -0.158 4.158 17 C 0.354 3.646 18 O -0.471 6.471 19 C -0.103 4.103 20 C 0.053 3.947 21 H 0.031 0.969 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.015 0.985 25 H 0.030 0.970 26 H 0.260 0.740 27 H 0.080 0.920 28 H 0.025 0.975 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.604 -0.036 12.788 12.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.022 4.022 3 H 0.043 0.957 4 C -0.007 4.007 5 C -0.556 4.556 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.259 5.259 14 C -0.077 4.077 15 C -0.140 4.140 16 C -0.178 4.178 17 C 0.211 3.789 18 O -0.342 6.342 19 C -0.141 4.141 20 C -0.075 4.075 21 H 0.050 0.950 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.033 0.967 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.044 0.956 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.345 -0.386 13.117 13.127 hybrid contribution 0.017 1.305 -1.038 1.668 sum -0.328 0.919 12.079 12.118 Atomic orbital electron populations 1.21766 0.95266 1.01645 1.00049 1.21820 0.95073 0.95146 0.90130 0.95721 1.19207 0.95884 0.96394 0.89213 1.21187 1.37382 1.06111 0.90909 0.92717 1.24975 0.95315 0.94939 0.99013 1.69960 1.41668 1.18193 1.23461 0.86635 0.79040 0.79602 0.82962 1.20769 1.21233 1.19901 1.62044 1.09112 1.52838 1.01909 1.22084 1.00739 0.94798 0.90043 1.21490 0.92667 1.01952 0.97921 1.22213 0.98589 1.00829 0.96122 1.26158 0.75755 0.93257 0.83749 1.90381 1.28847 1.76316 1.38630 1.21526 1.00016 1.00417 0.92177 1.22112 0.88347 0.98071 0.98929 0.95009 0.91484 0.92612 0.96734 0.95209 0.93022 0.90164 0.95643 0.90350 0.91831 0.89543 0.88935 0.91609 0.90295 0.88663 0.95577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.74 37.16 0.32 -2.09 16 2 C 0.09 1.72 2.13 -67.71 -0.14 1.58 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 4 C 0.03 0.75 4.22 -27.88 -0.12 0.64 16 5 C -0.52 -14.11 8.27 -34.44 -0.28 -14.40 16 6 H 0.05 1.46 7.10 -52.49 -0.37 1.08 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.53 -9.13 4.53 -226.70 -1.03 -10.16 16 14 C 0.05 0.72 5.21 -3.83 -0.02 0.70 16 15 C -0.10 -1.14 5.36 -26.65 -0.14 -1.29 16 16 C -0.16 -1.81 2.68 -91.65 -0.25 -2.05 16 17 C 0.35 3.78 10.45 36.00 0.38 4.16 16 18 O -0.47 -6.78 17.90 5.99 0.11 -6.68 16 19 C -0.10 -1.29 5.36 -26.65 -0.14 -1.44 16 20 C 0.05 0.86 5.15 -3.84 -0.02 0.84 16 21 H 0.03 0.50 6.27 -51.93 -0.33 0.17 16 22 H 0.07 1.33 6.90 -51.93 -0.36 0.97 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.01 0.38 6.09 -51.93 -0.32 0.06 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.08 1.09 5.99 -51.93 -0.31 0.78 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.08 8.12 -51.93 -0.42 0.66 16 32 H 0.09 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 1.76 5.86 -51.93 -0.30 1.46 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 285.57 15.07 4.30 4.30 Total: -1.00 -30.22 285.57 -7.19 -37.40 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.77 Total: -3.79 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -0.51 Total: -11.80 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.29 Total: -35.70 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: 0.11 Total: -6.68 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.22 -7.19 -37.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695833060.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.093 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds