Wall clock time and date at job start Mon Mar 30 2020 02:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46992 * 2 1 4 4 C 1.53001 * 109.46927 * 239.99782 * 2 1 3 5 5 C 1.50700 * 109.47123 * 62.46595 * 4 2 1 6 6 H 1.07999 * 119.99928 * 5.59776 * 5 4 2 7 7 C 1.37882 * 119.99630 * 185.60055 * 5 4 2 8 8 N 1.31509 * 120.00358 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99613 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46754 * 90.00124 * 9 7 5 11 11 H 1.48498 * 109.47090 * 209.99915 * 9 7 5 12 12 H 1.48502 * 109.47479 * 330.00335 * 9 7 5 13 13 N 1.46897 * 109.47185 * 120.00037 * 2 1 3 14 14 C 1.46851 * 110.99948 * 300.59261 * 13 2 1 15 15 C 1.53033 * 109.52370 * 174.16379 * 14 13 2 16 16 C 1.53116 * 109.28428 * 59.17443 * 15 14 13 17 17 C 1.50696 * 109.52433 * 182.44194 * 16 15 14 18 18 O 1.20766 * 120.00087 * 239.99717 * 17 16 15 19 19 C 1.53121 * 109.15647 * 302.34671 * 16 15 14 20 20 C 1.46846 * 111.00257 * 176.37890 * 13 2 1 21 21 H 1.08997 * 109.46953 * 300.00009 * 1 2 3 22 22 H 1.09001 * 109.47125 * 60.00582 * 1 2 3 23 23 H 1.09004 * 109.46848 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47010 * 182.46388 * 4 2 1 25 25 H 1.08997 * 109.47518 * 302.45972 * 4 2 1 26 26 H 0.97001 * 120.00020 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.46348 * 54.14147 * 14 13 2 28 28 H 1.09000 * 109.44805 * 294.16918 * 14 13 2 29 29 H 1.08999 * 109.50425 * 299.22984 * 15 14 13 30 30 H 1.09002 * 109.50074 * 179.11477 * 15 14 13 31 31 H 1.09002 * 109.52186 * 62.24747 * 16 15 14 32 32 H 1.08001 * 120.00346 * 59.99980 * 17 16 15 33 33 H 1.09007 * 109.49788 * 177.59360 * 19 16 15 34 34 H 1.08998 * 109.50576 * 297.71097 * 19 16 15 35 35 H 1.09001 * 109.46204 * 305.85033 * 20 13 2 36 36 H 1.08993 * 109.45943 * 65.81948 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5882 0.0235 -2.4790 6 1 1.0748 0.9685 -2.3797 7 6 1.8302 -0.5016 -3.7307 8 7 2.4557 -1.6521 -3.8515 9 14 1.2695 0.4212 -5.2550 10 1 2.3484 1.3378 -5.7034 11 1 0.9630 -0.5492 -6.3364 12 1 0.0514 1.2088 -4.9368 13 7 2.0197 -0.6925 1.1994 14 6 1.5373 -0.0348 2.4206 15 6 1.9435 -0.8627 3.6419 16 6 3.4686 -0.9943 3.6790 17 6 3.8712 -1.8587 4.8459 18 8 4.5862 -1.4115 5.7103 19 6 3.9493 -1.6379 2.3755 20 6 3.4851 -0.7875 1.1909 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1291 -0.7597 -1.2274 25 1 1.6411 -1.7354 -1.2716 26 1 2.6256 -2.0217 -4.7321 27 1 0.4512 0.0487 2.3833 28 1 1.9758 0.9604 2.4943 29 1 1.4943 -1.8535 3.5757 30 1 1.5990 -0.3661 4.5490 31 1 3.9170 -0.0063 3.7845 32 1 3.5204 -2.8782 4.9092 33 1 5.0378 -1.6953 2.3779 34 1 3.5316 -2.6410 2.2893 35 1 3.8136 -1.2508 0.2605 36 1 3.9142 0.2112 1.2704 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695833060.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:56 Heat of formation + Delta-G solvation = -68.056010 kcal Electronic energy + Delta-G solvation = -15837.364547 eV Core-core repulsion = 13320.155689 eV Total energy + Delta-G solvation = -2517.208858 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78995 -39.52799 -36.44110 -34.55375 -31.98146 -31.78784 -28.78587 -26.69791 -25.33004 -23.54253 -22.46030 -21.05624 -20.65867 -18.68971 -17.32611 -16.69207 -16.54216 -16.11348 -15.74583 -15.42324 -15.22487 -14.77512 -14.32692 -14.21393 -13.94822 -13.53489 -13.13026 -13.06332 -12.69951 -12.51553 -12.29033 -12.19858 -12.07258 -11.91901 -11.57376 -11.45585 -11.15258 -10.86919 -10.49596 -10.38540 -9.13049 -8.16647 -6.25502 1.02360 1.41398 1.41794 1.52750 2.42047 3.06762 3.17221 3.35755 3.77204 3.86985 4.03411 4.26829 4.32128 4.39984 4.53993 4.60308 4.61192 4.70840 4.79156 4.88702 4.94548 5.00206 5.06322 5.17584 5.18802 5.27801 5.39985 5.46445 5.52923 5.75829 5.81873 6.15691 6.40212 6.41466 6.45081 6.90416 7.42368 8.95357 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.054627 B = 0.005617 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.441789 B = 4983.725562 C = 5322.150693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.093 3.907 3 H 0.014 0.986 4 C 0.040 3.960 5 C -0.532 4.532 6 H 0.059 0.941 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.959 3.041 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.263 1.263 13 N -0.538 5.538 14 C 0.049 3.951 15 C -0.095 4.095 16 C -0.155 4.155 17 C 0.370 3.630 18 O -0.509 6.509 19 C -0.095 4.095 20 C 0.053 3.947 21 H 0.066 0.934 22 H 0.050 0.950 23 H 0.049 0.951 24 H -0.008 1.008 25 H -0.002 1.002 26 H 0.262 0.738 27 H 0.089 0.911 28 H 0.021 0.979 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 0.183 14.028 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.014 4.014 3 H 0.032 0.968 4 C 0.002 3.998 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.784 3.216 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.187 1.187 13 N -0.263 5.263 14 C -0.079 4.079 15 C -0.133 4.133 16 C -0.174 4.174 17 C 0.229 3.771 18 O -0.382 6.382 19 C -0.133 4.133 20 C -0.075 4.075 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.010 0.990 25 H 0.016 0.984 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.039 0.961 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.155 0.845 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -1.367 -0.162 14.371 14.436 hybrid contribution 0.355 1.232 -1.421 1.914 sum -1.012 1.070 12.950 13.033 Atomic orbital electron populations 1.21665 0.93728 1.01550 1.00965 1.21537 0.96222 0.93912 0.89778 0.96809 1.19022 0.94352 0.95018 0.91371 1.21586 1.37095 1.06373 0.92024 0.92320 1.25866 0.95364 0.95776 1.02423 1.70094 1.42948 1.19855 1.24287 0.85545 0.78954 0.78347 0.78797 1.20153 1.20870 1.18698 1.62013 1.09503 1.52753 1.02023 1.22222 1.01157 0.94997 0.89511 1.21466 0.92261 1.02398 0.97162 1.22168 0.98868 1.00478 0.95923 1.26498 0.74212 0.94308 0.82094 1.90393 1.30715 1.77199 1.39928 1.21432 1.00643 1.00077 0.91108 1.22068 0.88042 0.98122 0.99298 0.91547 0.93077 0.93146 0.98987 0.98360 0.92918 0.89268 0.96055 0.88987 0.89596 0.90857 0.84550 0.90687 0.89272 0.91975 0.96371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.44 8.74 71.98 0.63 -3.81 16 2 C 0.09 3.82 2.13 44.92 0.10 3.92 16 3 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 4 C 0.04 2.06 4.22 29.85 0.13 2.18 16 5 C -0.53 -29.67 8.27 25.60 0.21 -29.46 16 6 H 0.06 3.15 7.10 -2.91 -0.02 3.13 16 7 C 0.00 0.20 5.46 84.66 0.46 0.66 16 8 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 9 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 13 N -0.54 -18.18 4.53 -871.13 -3.94 -22.12 16 14 C 0.05 1.26 5.21 86.32 0.45 1.71 16 15 C -0.10 -1.82 5.36 30.64 0.16 -1.65 16 16 C -0.15 -3.17 2.68 -11.46 -0.03 -3.20 16 17 C 0.37 6.70 10.45 71.23 0.74 7.45 16 18 O -0.51 -13.57 17.90 -1.47 -0.03 -13.59 16 19 C -0.09 -2.24 5.36 30.65 0.16 -2.08 16 20 C 0.05 1.74 5.15 86.33 0.44 2.18 16 21 H 0.07 1.94 6.27 -2.39 -0.01 1.92 16 22 H 0.05 2.00 6.90 -2.39 -0.02 1.99 16 23 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 24 H -0.01 -0.45 6.09 -2.39 -0.01 -0.46 16 25 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.26 14.90 8.31 -92.71 -0.77 14.12 16 27 H 0.09 2.15 5.99 -2.39 -0.01 2.14 16 28 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.72 8.12 -2.39 -0.02 1.70 16 32 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 33 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 2.44 5.86 -2.39 -0.01 2.42 16 36 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -66.80 285.57 2.84 -63.96 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.04 Total: 3.82 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 3.46 Total: -22.10 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -3.66 Total: -78.00 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.03 Total: -13.59 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.80 2.84 -63.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695833060.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.094 kcal (2) G-P(sol) polarization free energy of solvation -66.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds