Wall clock time and date at job start Mon Mar 30 2020 02:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46643 * 2 1 4 4 C 1.52994 * 109.47325 * 239.99997 * 2 1 3 5 5 C 1.50701 * 109.47211 * 174.99756 * 4 2 1 6 6 H 1.07994 * 120.00090 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00060 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00157 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46867 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46977 * 119.99985 * 9 7 5 12 12 H 1.48494 * 109.46948 * 239.99723 * 9 7 5 13 13 N 1.46897 * 109.47307 * 119.99415 * 2 1 3 14 14 C 1.46895 * 110.99971 * 275.00577 * 13 2 1 15 15 C 1.50703 * 109.46959 * 179.97438 * 14 13 2 16 16 C 1.29984 * 118.74269 * 94.99765 * 15 14 13 17 17 C 1.50233 * 122.86387 * 180.12912 * 16 15 14 18 18 O 1.42900 * 110.13664 * 344.68092 * 17 16 15 19 19 C 1.43304 * 113.01880 * 50.17829 * 18 17 16 20 20 C 1.50382 * 118.74091 * 275.24777 * 15 14 13 21 21 H 1.08999 * 109.46859 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47468 * 300.00401 * 1 2 3 23 23 H 1.09005 * 109.47091 * 60.00385 * 1 2 3 24 24 H 1.08997 * 109.47166 * 294.99912 * 4 2 1 25 25 H 1.08999 * 109.47711 * 54.99623 * 4 2 1 26 26 H 0.96996 * 120.00430 * 180.02562 * 8 7 5 27 27 H 1.00899 * 110.99686 * 151.04668 * 13 2 1 28 28 H 1.08997 * 109.47685 * 59.99765 * 14 13 2 29 29 H 1.09002 * 109.47396 * 299.99667 * 14 13 2 30 30 H 1.08002 * 118.57049 * 0.41497 * 16 15 14 31 31 H 1.09000 * 109.35600 * 104.88626 * 17 16 15 32 32 H 1.09002 * 109.35774 * 224.47419 * 17 16 15 33 33 H 1.09008 * 109.67942 * 51.52209 * 19 18 17 34 34 H 1.09004 * 109.68131 * 172.07415 * 19 18 17 35 35 H 1.08996 * 109.58894 * 43.43440 * 20 15 14 36 36 H 1.08996 * 109.23820 * 283.52689 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2305 -1.1934 -2.3577 8 7 3.5767 -1.8386 -3.2989 9 14 6.0923 -1.0621 -2.4360 10 1 6.5838 -0.2915 -1.2656 11 1 6.6857 -2.4233 -2.4178 12 1 6.4872 -0.3667 -3.6872 13 7 2.0197 -0.6923 1.1995 14 6 2.0824 0.2228 2.3468 15 6 2.5873 -0.5215 3.5560 16 6 3.8560 -0.4734 3.8349 17 6 4.4588 -1.1820 5.0145 18 8 3.4331 -1.5783 5.9272 19 6 2.3575 -2.2798 5.2912 20 6 1.6050 -1.2962 4.3906 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.7517 -1.7714 -1.2055 25 1 1.6055 -0.2618 -2.1370 26 1 4.0611 -2.2460 -4.0339 27 1 2.9174 -1.1203 1.0287 28 1 1.0870 0.6165 2.5524 29 1 2.7588 1.0464 2.1182 30 1 4.5043 0.1048 3.1932 31 1 4.9964 -2.0651 4.6694 32 1 5.1545 -0.5129 5.5210 33 1 2.7569 -3.0966 4.6897 34 1 1.6804 -2.6771 6.0473 35 1 0.9264 -1.8468 3.7392 36 1 1.0333 -0.6034 5.0079 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695838820.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:28 Heat of formation + Delta-G solvation = -49.237080 kcal Electronic energy + Delta-G solvation = -15651.681092 eV Core-core repulsion = 13135.288283 eV Total energy + Delta-G solvation = -2516.392808 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.36779 -36.82184 -34.30831 -32.50097 -31.02142 -30.00064 -27.41399 -26.07929 -23.87290 -23.24086 -22.20473 -19.46519 -17.89128 -16.41706 -16.37292 -16.01232 -15.02434 -14.93969 -14.58333 -14.33370 -13.62742 -13.12382 -12.93390 -12.58031 -12.31375 -11.90640 -11.76356 -11.57931 -11.26012 -11.24357 -11.02567 -10.72177 -10.53200 -10.44874 -10.22051 -9.57115 -9.27572 -9.09273 -8.72037 -8.42043 -7.66695 -6.05506 -4.08708 2.26286 3.26402 3.34449 3.37016 3.90261 4.40518 4.82161 4.84854 5.04125 5.14096 5.27798 5.34740 5.40876 5.50349 5.62898 5.71472 5.88426 5.92793 5.95566 6.01718 6.08995 6.21350 6.29739 6.51975 6.63216 6.90194 6.92111 6.99460 7.17475 7.49612 7.61167 7.93929 8.02806 8.24862 8.34741 8.97504 9.55611 11.05443 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.024767 B = 0.007124 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.243475 B = 3929.626769 C = 4743.463534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.086 3.914 3 H 0.029 0.971 4 C 0.020 3.980 5 C -0.523 4.523 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.677 5.677 14 C 0.090 3.910 15 C -0.092 4.092 16 C -0.208 4.208 17 C 0.094 3.906 18 O -0.385 6.385 19 C 0.058 3.942 20 C -0.114 4.114 21 H 0.054 0.946 22 H 0.036 0.964 23 H 0.048 0.952 24 H 0.026 0.974 25 H 0.022 0.978 26 H 0.261 0.739 27 H 0.355 0.645 28 H 0.068 0.932 29 H 0.029 0.971 30 H 0.115 0.885 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.108 1.387 14.151 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.047 0.953 4 C -0.017 4.017 5 C -0.562 4.562 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.311 5.311 14 C -0.039 4.039 15 C -0.093 4.093 16 C -0.227 4.227 17 C 0.018 3.982 18 O -0.304 6.304 19 C -0.018 4.018 20 C -0.151 4.151 21 H 0.074 0.926 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.176 0.824 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.133 0.867 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.701 1.084 14.332 14.625 hybrid contribution 1.862 0.623 -0.838 2.135 sum -0.838 1.707 13.494 13.628 Atomic orbital electron populations 1.21793 0.96690 1.01319 0.99479 1.21637 0.93386 0.95891 0.91372 0.95338 1.19284 0.95435 0.96209 0.90798 1.21197 0.92229 1.34423 1.08314 0.93053 1.24990 0.98250 0.95176 0.95694 1.69968 1.35418 1.35573 1.11994 0.86584 0.85964 0.77800 0.77940 1.19870 1.20933 1.21011 1.60592 1.34818 1.31769 1.03957 1.21024 0.99849 0.93454 0.89590 1.20978 0.94481 0.97785 0.96044 1.22725 0.96602 1.03298 1.00118 1.21359 0.89736 0.97945 0.89157 1.88065 1.32530 1.75846 1.33923 1.22669 0.88983 0.93775 0.96410 1.21018 0.97943 0.98435 0.97734 0.92638 0.94528 0.93296 0.95578 0.96005 0.92973 0.82418 0.91312 0.95319 0.86742 0.92132 0.88459 0.92590 0.88828 0.89033 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.42 37.16 0.35 -2.07 16 2 C 0.09 1.80 2.59 -67.72 -0.18 1.62 16 3 H 0.03 0.61 7.80 -51.93 -0.40 0.21 16 4 C 0.02 0.51 4.57 -27.89 -0.13 0.38 16 5 C -0.52 -14.35 8.12 -34.44 -0.28 -14.63 16 6 H 0.05 1.38 7.49 -52.49 -0.39 0.98 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.68 -13.02 6.30 -108.00 -0.68 -13.70 16 14 C 0.09 1.47 5.55 -4.98 -0.03 1.44 16 15 C -0.09 -1.36 5.42 -100.93 -0.55 -1.91 16 16 C -0.21 -2.94 9.54 -35.97 -0.34 -3.29 16 17 C 0.09 1.17 7.04 35.78 0.25 1.43 16 18 O -0.38 -5.20 10.84 -35.23 -0.38 -5.58 16 19 C 0.06 0.69 6.90 37.22 0.26 0.95 16 20 C -0.11 -1.45 6.09 -27.97 -0.17 -1.62 16 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.35 7.51 7.20 -39.29 -0.28 7.23 16 28 H 0.07 1.06 7.42 -51.93 -0.39 0.68 16 29 H 0.03 0.49 7.78 -51.93 -0.40 0.08 16 30 H 0.11 1.63 7.83 -52.49 -0.41 1.22 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.67 8.10 -51.92 -0.42 0.24 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 294.65 15.07 4.44 4.44 Total: -1.00 -29.36 294.65 -7.85 -37.21 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.03 Total: 3.07 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -0.91 Total: -16.09 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.06 Total: -39.39 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.38 Total: -5.58 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.36 -7.85 -37.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838820.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.030 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds