Wall clock time and date at job start Mon Mar 30 2020 02:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46643 * 2 1 4 4 C 1.52994 * 109.47325 * 239.99997 * 2 1 3 5 5 C 1.50701 * 109.47211 * 174.99756 * 4 2 1 6 6 H 1.07994 * 120.00090 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00060 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00157 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46867 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46977 * 119.99985 * 9 7 5 12 12 H 1.48494 * 109.46948 * 239.99723 * 9 7 5 13 13 N 1.46897 * 109.47307 * 119.99415 * 2 1 3 14 14 C 1.46895 * 110.99971 * 275.00577 * 13 2 1 15 15 C 1.50703 * 109.46959 * 179.97438 * 14 13 2 16 16 C 1.29984 * 118.74269 * 94.99765 * 15 14 13 17 17 C 1.50233 * 122.86387 * 180.12912 * 16 15 14 18 18 O 1.42900 * 110.13664 * 344.68092 * 17 16 15 19 19 C 1.43304 * 113.01880 * 50.17829 * 18 17 16 20 20 C 1.50382 * 118.74091 * 275.24777 * 15 14 13 21 21 H 1.08999 * 109.46859 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47468 * 300.00401 * 1 2 3 23 23 H 1.09005 * 109.47091 * 60.00385 * 1 2 3 24 24 H 1.08997 * 109.47166 * 294.99912 * 4 2 1 25 25 H 1.08999 * 109.47711 * 54.99623 * 4 2 1 26 26 H 0.96996 * 120.00430 * 180.02562 * 8 7 5 27 27 H 1.00899 * 110.99686 * 151.04668 * 13 2 1 28 28 H 1.08997 * 109.47685 * 59.99765 * 14 13 2 29 29 H 1.09002 * 109.47396 * 299.99667 * 14 13 2 30 30 H 1.08002 * 118.57049 * 0.41497 * 16 15 14 31 31 H 1.09000 * 109.35600 * 104.88626 * 17 16 15 32 32 H 1.09002 * 109.35774 * 224.47419 * 17 16 15 33 33 H 1.09008 * 109.67942 * 51.52209 * 19 18 17 34 34 H 1.09004 * 109.68131 * 172.07415 * 19 18 17 35 35 H 1.08996 * 109.58894 * 43.43440 * 20 15 14 36 36 H 1.08996 * 109.23820 * 283.52689 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2305 -1.1934 -2.3577 8 7 3.5767 -1.8386 -3.2989 9 14 6.0923 -1.0621 -2.4360 10 1 6.5838 -0.2915 -1.2656 11 1 6.6857 -2.4233 -2.4178 12 1 6.4872 -0.3667 -3.6872 13 7 2.0197 -0.6923 1.1995 14 6 2.0824 0.2228 2.3468 15 6 2.5873 -0.5215 3.5560 16 6 3.8560 -0.4734 3.8349 17 6 4.4588 -1.1820 5.0145 18 8 3.4331 -1.5783 5.9272 19 6 2.3575 -2.2798 5.2912 20 6 1.6050 -1.2962 4.3906 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.7517 -1.7714 -1.2055 25 1 1.6055 -0.2618 -2.1370 26 1 4.0611 -2.2460 -4.0339 27 1 2.9174 -1.1203 1.0287 28 1 1.0870 0.6165 2.5524 29 1 2.7588 1.0464 2.1182 30 1 4.5043 0.1048 3.1932 31 1 4.9964 -2.0651 4.6694 32 1 5.1545 -0.5129 5.5210 33 1 2.7569 -3.0966 4.6897 34 1 1.6804 -2.6771 6.0473 35 1 0.9264 -1.8468 3.7392 36 1 1.0333 -0.6034 5.0079 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695838820.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:28 Heat of formation + Delta-G solvation = -68.265413 kcal Electronic energy + Delta-G solvation = -15652.506222 eV Core-core repulsion = 13135.288283 eV Total energy + Delta-G solvation = -2517.217939 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.40376 -38.35181 -35.72472 -34.44173 -31.99918 -31.51963 -29.30752 -27.33038 -25.21780 -24.76028 -23.54250 -21.16843 -18.95927 -18.53765 -17.52204 -17.09072 -16.59458 -16.40257 -16.01850 -15.74631 -14.95828 -14.63061 -14.06180 -13.92551 -13.63705 -13.39965 -13.38307 -13.16610 -12.96704 -12.63875 -12.50096 -12.39814 -12.32622 -11.94569 -11.49801 -11.26111 -11.04349 -10.60914 -10.54826 -9.85394 -9.21149 -8.21910 -6.32545 1.13510 1.36920 1.37841 1.49532 2.37791 2.96681 3.10243 3.52644 3.79686 3.86827 4.07016 4.25842 4.34093 4.42977 4.52881 4.53570 4.61969 4.67686 4.71832 4.75109 4.90054 4.96507 5.01026 5.05541 5.19355 5.32143 5.46230 5.50429 5.55124 5.81829 5.91363 6.17827 6.18586 6.36568 6.58765 6.82668 7.36351 8.89952 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.024767 B = 0.007124 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.243475 B = 3929.626769 C = 4743.463534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.094 3.906 3 H 0.023 0.977 4 C 0.027 3.973 5 C -0.534 4.534 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.280 1.280 13 N -0.676 5.676 14 C 0.094 3.906 15 C -0.108 4.108 16 C -0.207 4.207 17 C 0.093 3.907 18 O -0.396 6.396 19 C 0.057 3.943 20 C -0.111 4.111 21 H 0.050 0.950 22 H 0.062 0.938 23 H 0.052 0.948 24 H -0.002 1.002 25 H -0.004 1.004 26 H 0.263 0.737 27 H 0.341 0.659 28 H 0.081 0.919 29 H 0.021 0.979 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.053 0.947 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 1.731 15.773 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.016 4.016 3 H 0.041 0.959 4 C -0.010 4.010 5 C -0.572 4.572 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.785 3.215 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.206 1.206 13 N -0.309 5.309 14 C -0.035 4.035 15 C -0.108 4.108 16 C -0.227 4.227 17 C 0.017 3.983 18 O -0.315 6.315 19 C -0.020 4.020 20 C -0.148 4.148 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.016 0.984 25 H 0.014 0.986 26 H 0.072 0.928 27 H 0.160 0.840 28 H 0.099 0.901 29 H 0.039 0.961 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.071 0.929 34 H 0.136 0.864 35 H 0.107 0.893 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.148 1.441 15.974 16.182 hybrid contribution 1.671 0.528 -1.343 2.208 sum -0.477 1.969 14.631 14.770 Atomic orbital electron populations 1.21704 0.94251 1.01534 1.00992 1.21464 0.95308 0.94740 0.90069 0.95898 1.19142 0.94856 0.94777 0.92262 1.21523 0.93280 1.34072 1.08299 0.92675 1.25886 1.03343 0.94793 0.95326 1.70094 1.37499 1.36633 1.12763 0.85477 0.79830 0.77985 0.78224 1.18754 1.20407 1.20597 1.60632 1.33865 1.32315 1.04049 1.21047 1.00500 0.92882 0.89086 1.21041 0.95251 0.98619 0.95933 1.22919 0.96460 1.02788 1.00516 1.21486 0.89781 0.98449 0.88629 1.88055 1.33006 1.76015 1.34441 1.22801 0.88946 0.93257 0.96954 1.21020 0.97545 0.98575 0.97652 0.93063 0.91924 0.92867 0.98365 0.98576 0.92777 0.83964 0.90105 0.96073 0.87305 0.91410 0.86524 0.92903 0.86393 0.89341 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 9.42 71.98 0.68 -3.74 16 2 C 0.09 3.89 2.59 44.91 0.12 4.01 16 3 H 0.02 0.98 7.80 -2.38 -0.02 0.96 16 4 C 0.03 1.41 4.57 29.85 0.14 1.55 16 5 C -0.53 -29.61 8.12 25.60 0.21 -29.40 16 6 H 0.06 2.95 7.49 -2.91 -0.02 2.93 16 7 C 0.00 0.27 5.46 84.65 0.46 0.73 16 8 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 9 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 13 N -0.68 -25.72 6.30 -495.59 -3.12 -28.84 16 14 C 0.09 2.94 5.55 85.56 0.47 3.41 16 15 C -0.11 -3.02 5.42 -15.54 -0.08 -3.10 16 16 C -0.21 -5.57 9.54 26.55 0.25 -5.32 16 17 C 0.09 2.11 7.04 71.09 0.50 2.61 16 18 O -0.40 -9.78 10.84 -148.98 -1.62 -11.40 16 19 C 0.06 1.22 6.90 72.03 0.50 1.71 16 20 C -0.11 -2.60 6.09 29.79 0.18 -2.42 16 21 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.06 1.85 7.45 -2.39 -0.02 1.83 16 23 H 0.05 1.78 8.14 -2.38 -0.02 1.77 16 24 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 25 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 27 H 0.34 14.51 7.20 -89.69 -0.65 13.86 16 28 H 0.08 2.33 7.42 -2.39 -0.02 2.31 16 29 H 0.02 0.70 7.78 -2.39 -0.02 0.68 16 30 H 0.11 3.00 7.83 -2.91 -0.02 2.98 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 1.16 8.10 -2.38 -0.02 1.14 16 34 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -62.44 294.65 1.39 -61.05 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.39 Total: 19.10 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 3.42 Total: -29.95 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -2.84 Total: -84.69 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -1.62 Total: -11.40 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -62.44 1.39 -61.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838820.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.219 kcal (2) G-P(sol) polarization free energy of solvation -62.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds